genome.fa.s24.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  61  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9250402--9250568	81	2.0	83	83	3	212	17	17	11	52	1.73
9255700--9255794	37	2.6	35	80	5	100	32	9	20	37	1.84
9260333--9260361	15	1.9	15	100	0	58	41	17	13	27	1.87
9260481--9260527	19	2.5	19	81	18	55	51	25	0	23	1.49
9260673--9260725	20	2.7	20	87	0	79	47	22	0	30	1.52
9261298--9261339	20	2.0	20	82	13	50	35	2	4	57	1.33
9263727--9263790	18	3.3	19	72	16	60	56	1	7	34	1.38
9264355--9264388	2	17.0	2	93	0	59	47	0	0	52	1.00
9269261--9269318	22	2.7	21	73	21	57	58	6	10	24	1.55
9269261--9269324	21	3.0	21	76	10	60	59	6	10	23	1.54
9271474--9271526	23	2.4	22	80	3	70	41	11	5	41	1.64
9271474--9271534	23	2.7	23	71	2	61	39	9	4	45	1.59
9272539--9272575	18	2.1	18	89	0	56	13	32	5	48	1.65
9276659--9276684	13	2.0	13	100	0	52	61	0	0	38	0.96
9276922--9276957	16	2.2	16	90	9	56	80	0	2	16	0.83
9276927--9277008	6	13.3	6	81	10	60	79	3	7	9	1.04
9276943--9277008	19	3.5	19	79	6	73	80	4	7	7	1.02
9278238--9278395	43	3.6	43	77	11	126	47	17	7	27	1.74
9278696--9278759	27	2.4	28	78	7	78	29	1	4	64	1.23
9278704--9278752	26	1.9	26	87	4	73	30	2	0	67	1.02
9281154--9281193	11	3.5	11	83	6	53	72	0	10	17	1.11
9281156--9281194	12	3.3	12	82	7	53	74	0	10	15	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9291511--9291545	15	2.3	15	90	5	52	82	0	2	14	0.77
9291875--9292211	135	2.5	136	82	8	380	54	8	17	18	1.68
9292228--9292490	132	2.0	132	80	7	293	48	8	23	19	1.76
9293827--9293937	41	2.7	41	75	5	116	39	18	10	31	1.85
9294750--9294797	22	2.2	22	84	0	60	35	20	14	29	1.93
9295057--9295098	16	2.6	16	84	0	57	83	14	2	0	0.75
9295055--9295101	10	4.7	10	76	7	51	85	12	2	0	0.70
9295143--9295466	98	3.3	96	78	6	303	31	13	17	36	1.90
9295141--9295491	49	7.1	49	79	5	273	31	13	18	35	1.90
9296048--9296465	143	2.9	140	81	6	421	33	14	11	40	1.82
9300932--9300958	14	1.9	14	100	0	54	14	11	7	66	1.43
9301534--9301616	45	1.9	42	85	11	114	30	14	10	44	1.79
9304346--9304417	30	2.4	30	79	9	85	19	4	12	63	1.44
9306759--9306807	19	2.6	19	81	12	57	83	6	10	0	0.80
9306775--9306810	9	3.9	9	85	7	54	88	2	8	0	0.59
9306773--9306831	31	1.9	31	86	6	84	84	1	10	3	0.80
9306773--9306831	23	2.6	23	86	5	75	84	1	10	3	0.80
9306774--9306831	19	2.9	19	87	7	71	84	1	10	3	0.81
9306776--9306831	8	6.9	8	78	13	53	83	1	10	3	0.83
9312941--9312977	3	12.3	3	100	0	74	32	0	0	67	0.91
9313979--9314012	17	2.0	17	88	11	52	82	11	5	0	0.83
9314639--9315029	145	2.7	145	87	3	545	41	14	13	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9315921--9316115	50	3.9	50	85	5	268	38	21	10	29	1.87
9317591--9317646	23	2.5	22	82	11	60	0	25	1	73	0.93
9317940--9318407	144	3.2	144	88	3	622	39	13	15	30	1.87
9321520--9321587	33	2.1	33	88	0	100	32	20	8	38	1.84
9322395--9322445	15	3.5	15	86	5	59	7	3	39	49	1.51
9322534--9322617	20	4.2	20	79	10	82	13	0	35	51	1.41
9324788--9325746	50	19.2	50	80	5	859	36	15	13	34	1.87
9324788--9325746	152	6.4	150	81	4	947	36	15	13	34	1.87
9324788--9325746	202	4.8	199	83	5	976	36	15	13	34	1.87
9326871--9326916	22	2.1	21	88	4	65	17	2	2	78	0.96
9329221--9329254	17	2.0	17	94	0	59	47	32	11	8	1.71
9330987--9331018	15	2.1	16	94	5	57	12	21	18	46	1.82
9330982--9331020	16	2.4	17	83	16	55	15	20	15	48	1.81
9336190--9336242	24	2.2	24	93	0	88	50	16	11	20	1.76
9336575--9336712	70	2.0	69	87	4	197	49	10	19	21	1.77
9336577--9336737	69	2.3	70	83	3	182	49	10	19	20	1.78
9336719--9336908	69	2.8	68	81	4	204	48	15	18	17	1.81
9338236--9338300	19	3.6	18	81	10	78	4	13	0	81	0.84
9338255--9338289	11	3.2	11	87	0	52	2	8	0	88	0.61
9338255--9338301	13	3.9	12	78	10	51	2	12	0	85	0.70
9346480--9346513	17	2.0	17	88	0	50	5	29	0	64	1.17
9348797--9349054	134	1.9	132	93	1	444	51	18	10	18	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9352228--9352294	27	2.5	26	78	9	71	10	16	0	73	1.10
9360009--9360050	18	2.3	18	84	8	50	23	2	26	47	1.64
9360093--9360117	13	1.9	13	100	0	50	16	4	24	56	1.57
9360174--9360279	15	6.8	16	74	8	51	23	1	27	47	1.62
9360190--9360246	15	3.7	15	73	19	55	19	1	28	50	1.57
9360165--9360298	38	3.5	36	74	11	108	20	1	28	49	1.58
9360723--9360773	3	17.3	3	80	15	54	25	1	3	68	1.17
9360723--9360773	17	3.5	15	82	17	63	25	1	3	68	1.17
9361554--9361622	36	1.9	36	82	5	86	11	1	17	69	1.25
9373955--9374002	10	4.8	10	92	0	60	37	2	10	50	1.49
9374427--9374456	2	15.0	2	100	0	60	0	50	0	50	1.00
9374456--9374481	2	13.0	2	100	0	52	50	0	0	50	1.00
9376111--9376158	5	9.8	5	81	4	62	22	0	2	75	0.91
9376111--9376158	24	2.0	24	87	0	69	22	0	2	75	0.91
9376111--9376158	19	2.5	20	82	6	62	22	0	2	75	0.91
9377339--9377372	16	2.1	16	88	0	50	26	2	20	50	1.63
9377371--9377409	18	2.2	18	95	0	69	48	0	10	41	1.37
9378741--9378767	2	13.5	2	100	0	54	51	0	0	48	1.00
9382951--9383046	42	2.3	40	83	11	115	35	4	0	60	1.16
9382987--9383050	35	2.0	32	85	14	87	37	1	0	60	1.06
9384323--9384358	6	6.0	6	87	12	56	0	16	0	83	0.65
9386047--9386094	17	2.8	17	78	12	53	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9386060--9386094	11	2.8	13	83	16	56	68	0	31	0	0.90
9386050--9386093	11	3.9	11	83	13	54	70	0	29	0	0.88
9386050--9386094	24	1.9	23	90	4	72	71	0	28	0	0.87
9391106--9391182	13	5.7	13	74	15	50	77	0	14	7	0.97
9391103--9391182	19	4.3	18	76	21	69	78	0	13	7	0.95
9391131--9391193	24	2.6	24	80	5	74	77	0	17	4	0.93
9391135--9391195	10	5.9	10	73	19	54	77	0	18	4	0.95
9392165--9392231	22	3.1	22	84	4	91	35	8	14	40	1.78
9392302--9392411	44	2.5	45	79	8	127	32	12	17	37	1.87
9392744--9392780	18	2.1	18	89	0	56	32	16	16	35	1.91
9392780--9392809	15	2.0	15	93	0	51	30	6	13	50	1.67
9393604--9393634	12	2.7	11	90	9	53	70	0	29	0	0.87
9394182--9394493	171	1.8	173	86	4	461	41	8	12	38	1.72
9394518--9394626	47	2.3	47	81	7	132	55	6	12	24	1.60
9396824--9396878	3	18.7	3	84	3	67	25	0	5	69	1.10
9397745--9397782	2	19.0	2	88	0	58	52	2	0	44	1.14
9398795--9398824	14	2.1	14	100	0	60	60	6	0	33	1.23
9402337--9402368	16	2.0	16	93	0	55	28	43	9	18	1.81
9402754--9402797	18	2.5	17	85	7	52	59	0	4	36	1.18
9409254--9409288	16	2.2	16	94	0	61	31	14	11	42	1.81
9410603--9410646	22	2.0	22	95	0	79	38	13	6	40	1.71
9411329--9411377	16	2.7	19	78	15	59	32	0	6	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9412112--9412139	13	2.2	13	100	0	56	14	0	7	78	0.95
9412213--9412623	58	6.9	58	81	12	453	43	8	13	34	1.75
9416445--9416494	19	2.7	18	84	12	57	78	0	16	6	0.95
9416445--9416507	28	2.4	26	78	7	65	76	0	17	6	0.99
9417731--9418547	40	20.1	41	88	6	1149	23	17	21	37	1.94
9417731--9418547	162	5.0	161	88	5	1190	23	17	21	37	1.94
9418553--9418589	15	2.5	15	90	0	56	86	13	0	0	0.57
9418555--9418589	7	4.9	7	92	3	52	88	11	0	0	0.51
9418772--9418834	28	2.2	28	75	10	67	34	0	6	58	1.23
9420432--9420712	41	6.9	42	86	8	418	22	17	22	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129