genome.fa.s24.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  96  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15890653--15890827	23	7.4	23	72	13	99	56	2	0	41	1.16
15890648--15890757	59	1.9	56	87	5	157	56	3	0	40	1.17
15890643--15890827	15	12.6	15	69	17	104	55	2	0	41	1.16
15890920--15890969	26	2.0	24	84	7	64	50	6	0	44	1.26
15892512--15892551	21	1.9	21	85	10	55	57	7	0	35	1.27
15892558--15892591	14	2.4	14	95	0	59	38	2	0	58	1.13
15892810--15892835	2	13.0	2	100	0	52	50	0	0	50	1.00
15893334--15893358	12	2.1	12	100	0	50	60	0	0	40	0.97
15893739--15893779	23	1.9	20	85	14	55	43	2	0	53	1.13
15895253--15895292	19	2.2	20	86	13	59	52	0	0	47	1.00
15895377--15895444	15	4.5	15	72	20	54	45	0	0	54	0.99
15895377--15895471	28	3.1	28	86	10	109	47	0	0	52	1.00
15895408--15895462	12	4.2	12	74	17	56	47	0	0	52	1.00
15897218--15897249	10	3.1	11	82	17	50	75	0	0	25	0.81
15897213--15897252	18	2.2	18	91	8	64	80	0	0	20	0.72
15916742--15916771	12	2.5	12	94	0	51	33	6	33	26	1.83
15918490--15918532	18	2.4	18	84	0	59	27	6	32	32	1.84
15924533--15924561	6	4.8	6	100	0	58	0	17	34	48	1.47
15925623--15925650	1	28.0	1	100	0	56	100	0	0	0	0.00
15927488--15927513	2	13.0	2	100	0	52	50	0	0	50	1.00
15928271--15928315	9	5.0	9	100	0	90	22	11	44	22	1.84
15929768--15929842	2	37.5	2	83	0	96	50	8	0	41	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15934681--15934862	92	1.9	96	93	4	318	41	15	6	36	1.73
15939587--15939629	14	2.9	15	82	6	61	60	4	0	34	1.17
15939598--15939637	7	5.7	7	90	0	62	60	5	0	35	1.19
15942006--15942073	30	2.3	30	85	10	86	38	8	1	51	1.42
15942020--15942086	30	2.2	30	89	5	100	43	8	1	46	1.44
15943326--15943370	13	3.5	13	88	11	67	22	6	0	71	1.09
15943448--15943476	3	9.7	3	100	0	58	31	0	0	68	0.89
15947042--15947110	29	2.4	29	87	2	95	33	14	17	34	1.90
15947061--15947129	31	2.3	29	82	9	77	31	17	15	34	1.92
15947328--15947379	14	3.6	15	79	7	63	5	11	1	80	0.96
15949259--15949293	9	3.9	9	88	0	52	11	2	14	71	1.25
15951871--15951911	20	2.0	20	86	9	57	31	9	29	29	1.89
15953155--15953181	4	6.8	4	100	0	54	22	0	0	77	0.76
15953245--15953284	2	20.0	2	100	0	80	50	0	0	50	1.00
15955224--15955257	16	2.1	16	88	5	50	76	8	0	14	1.01
15955233--15955273	13	3.2	13	82	6	57	82	2	0	14	0.76
15962559--15962598	21	1.9	21	94	0	71	35	17	15	32	1.91
15968838--15968884	18	2.5	19	82	10	69	80	0	19	0	0.70
15969523--15969558	10	3.6	10	92	0	63	86	0	13	0	0.58
15969523--15969558	11	3.5	11	85	14	58	86	0	13	0	0.58
15969526--15969589	20	3.6	17	77	10	58	79	0	17	3	0.85
15969525--15969589	26	2.4	26	84	5	76	80	0	16	3	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15969523--15969576	10	5.3	10	80	10	56	83	0	14	1	0.73
15969524--15969583	9	6.6	9	84	9	59	81	0	15	3	0.81
15969538--15969593	17	3.5	15	80	9	67	78	0	17	3	0.89
15970120--15970155	10	3.6	10	92	0	63	75	5	8	11	1.19
15970119--15970174	10	6.2	9	80	12	62	73	3	12	10	1.22
15972347--15972420	29	2.6	29	100	0	148	22	0	35	41	1.54
15972342--15972427	29	2.6	33	78	21	108	22	0	36	41	1.54
15972407--15972437	7	4.4	7	100	0	62	16	0	45	38	1.47
15972478--15972503	13	2.0	13	100	0	52	84	7	0	7	0.77
15975168--15975197	12	2.4	13	94	5	53	76	0	23	0	0.78
15975400--15975513	31	3.7	31	78	0	102	33	14	19	32	1.92
15975434--15975516	31	2.7	31	82	0	103	32	16	19	31	1.94
15975493--15975589	51	1.9	51	89	0	149	38	14	14	32	1.86
15975614--15975793	31	5.8	31	72	6	132	33	18	21	26	1.96
15975595--15975775	63	2.9	61	83	4	202	33	18	20	27	1.96
15976348--15976459	46	2.5	46	82	1	127	37	7	8	46	1.63
15976561--15976604	18	2.5	17	82	10	52	79	6	2	11	1.01
15977268--15977312	21	2.1	21	88	8	65	28	51	13	6	1.66
15977270--15977312	14	3.1	14	80	6	52	30	48	13	6	1.69
15978827--15978894	3	23.7	3	84	11	81	66	1	0	32	1.01
15980391--15980423	17	1.9	17	88	11	50	81	0	0	18	0.68
15980790--15980841	27	1.9	27	84	0	68	48	3	1	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15983005--15983054	8	5.9	9	75	13	52	4	28	0	68	1.08
15982996--15983062	21	3.3	20	72	23	61	4	22	0	73	1.01
15984599--15984623	7	3.6	7	100	0	50	24	0	0	76	0.80
15985001--15985100	29	3.5	29	75	6	96	19	9	19	53	1.71
15985396--15985432	20	1.9	20	88	5	58	40	2	24	32	1.69
15985922--15986304	97	4.0	97	74	9	246	42	17	9	29	1.82
15986049--15986202	45	3.2	48	80	9	154	42	20	8	28	1.81
15985922--15986294	47	7.8	49	75	7	255	43	17	9	29	1.81
15997188--15997229	21	2.0	21	85	0	57	19	23	7	50	1.72
15998011--15998063	17	3.0	19	70	27	53	16	9	5	67	1.37
16002594--16002621	3	9.3	3	100	0	56	32	0	0	67	0.91
16003267--16003309	16	2.5	18	85	11	63	2	18	0	79	0.85
16003267--16003311	17	2.6	18	82	10	58	2	17	0	80	0.82
16003454--16003492	21	2.0	21	85	10	55	10	12	0	76	1.01
16005400--16005508	7	14.9	7	72	19	53	19	1	3	75	1.05
16005408--16005547	8	17.0	8	65	14	52	17	2	5	75	1.10
16005394--16005489	31	3.1	30	77	10	88	19	2	4	73	1.09
16005464--16005528	14	4.8	14	78	14	64	12	0	10	76	1.01
16005455--16005528	33	2.1	34	83	11	89	13	0	9	77	1.00
16005452--16005543	42	2.2	40	81	11	96	16	1	7	75	1.09
16006339--16006382	16	2.9	15	86	6	54	77	4	6	11	1.11
16006992--16007023	16	2.0	16	100	0	64	25	6	6	62	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16010412--16010461	25	2.0	25	96	0	91	16	34	0	50	1.45
16016918--16016957	18	2.3	18	87	12	57	45	2	0	52	1.14
16020523--16020557	16	2.2	16	89	0	52	25	0	11	62	1.28
16023089--16023193	52	2.0	52	86	0	147	29	20	5	43	1.75
16021626--16024195	927	2.8	924	81	6	2986	33	20	8	36	1.84
16034344--16034395	4	13.2	4	81	4	61	23	1	3	71	1.13
16034328--16034391	27	2.4	27	82	7	69	20	6	3	70	1.23
16034374--16034443	15	4.5	15	77	12	61	20	8	5	65	1.40
16034454--16034489	18	2.0	18	89	10	56	66	0	2	30	1.06
16041900--16041961	32	1.9	32	93	0	106	35	8	8	48	1.62
16043924--16043956	17	1.9	17	100	0	66	54	0	9	36	1.32
16049662--16049692	3	10.7	3	93	6	55	35	0	0	64	0.94
16050246--16050305	21	2.7	21	82	17	61	3	21	0	75	0.95
16050380--16050412	12	2.6	13	90	4	50	0	18	0	81	0.68
16052147--16052194	17	2.8	17	81	9	53	6	0	20	72	1.05
16052569--16052611	22	2.0	22	85	0	59	32	16	20	30	1.95
16052471--16052726	125	2.0	125	82	3	309	35	15	16	33	1.90
16052605--16052804	104	1.9	104	85	0	274	36	14	15	34	1.87
16052364--16052919	229	2.4	231	83	4	707	34	14	16	34	1.89
16052988--16053185	23	8.7	23	72	5	116	28	15	22	32	1.95
16053494--16053535	20	2.0	21	86	4	59	45	9	19	26	1.80
16053607--16053635	14	2.1	14	100	0	58	44	6	20	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16054542--16054575	13	2.4	15	90	9	54	67	5	11	14	1.39
16055506--16055573	17	4.1	16	73	7	64	50	1	4	44	1.31
16055404--16055709	79	3.9	79	84	5	406	46	5	9	39	1.59
16055404--16055706	159	1.9	157	87	5	450	45	5	9	39	1.59
16067407--16067439	15	2.1	16	88	5	50	30	3	0	66	1.06
16069893--16069930	20	1.9	20	84	10	51	78	7	2	10	1.04
16071336--16071398	14	4.7	13	75	13	65	68	1	1	28	1.08
16072227--16072253	8	3.4	8	100	0	54	62	0	0	37	0.95
16073113--16073188	32	2.4	32	86	2	100	32	9	14	43	1.77
16076204--16076248	21	2.1	21	100	0	90	17	33	13	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129