genome.fa.s24.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  7  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181142--1181194	26	2.0	26	96	0	97	26	24	20	28	1.99
1183883--1183933	26	2.0	26	100	0	102	25	27	19	27	1.99
1182863--1187129	901	4.8	896	85	4	5328	26	24	23	25	2.00
1188019--1188071	26	2.0	26	96	0	97	28	28	16	26	1.97
1189624--1189675	26	2.0	26	96	0	95	36	23	13	26	1.92
1190528--1190580	26	2.0	26	85	0	70	26	24	18	30	1.98
1191427--1191479	26	2.0	26	92	0	88	28	24	18	28	1.98
1188744--1194879	906	6.8	900	86	3	7849	26	24	23	25	2.00
1193221--1193273	26	2.0	26	85	7	72	28	22	20	28	1.99
1195707--1195759	26	2.0	26	92	7	90	30	26	16	26	1.97
1194831--1197065	902	2.5	898	88	2	3195	25	23	24	25	2.00
1196611--1196661	26	2.0	26	96	0	93	27	27	19	25	1.99
1198884--1198935	26	2.0	26	88	7	79	28	23	17	30	1.97
1199787--1199839	26	2.0	26	96	0	97	28	26	18	26	1.98
1198430--1200756	905	2.6	892	86	4	3175	26	24	24	24	2.00
1200677--1200729	26	2.0	26	92	0	88	26	26	18	28	1.98
1202724--1202776	26	2.0	26	100	0	106	26	26	20	26	1.99
1201647--1203402	893	2.0	893	88	1	2660	26	23	24	26	2.00
1203834--1203886	26	2.0	26	96	0	97	26	24	20	28	1.99
1204728--1204780	26	2.0	26	96	0	97	28	26	18	26	1.98
1203459--1210104	878	7.5	892	83	6	7795	25	25	23	25	2.00
1205614--1205666	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1206516--1206568	26	2.0	26	89	7	81	28	24	16	30	1.97
1208248--1208300	26	2.0	26	92	0	88	26	26	22	24	2.00
1209127--1209178	26	2.0	26	92	0	86	28	25	17	28	1.97
1207510--1210085	904	2.9	895	83	5	3371	26	24	23	25	2.00
1210030--1210082	26	2.0	26	96	0	97	28	24	20	26	1.99
1209934--1210271	185	1.8	185	88	0	523	21	30	26	22	1.99
1210215--1210267	26	2.0	26	92	0	88	32	24	15	28	1.95
1210686--1210737	26	2.0	25	82	10	61	48	13	11	26	1.77
1211831--1211883	26	2.0	26	100	0	106	26	26	20	26	1.99
1212021--1212665	341	1.9	336	88	7	993	28	21	20	29	1.98
1214406--1214803	159	2.5	157	80	5	408	21	26	28	23	1.99
1216505--1216554	26	1.9	26	95	0	91	24	28	20	28	1.99
1214748--1221551	890	7.5	888	73	12	5126	25	24	24	25	2.00
1217220--1217614	156	2.5	159	83	2	467	20	27	29	22	1.98
1218429--1218480	26	2.0	25	96	3	95	28	26	17	26	1.97
1219312--1219364	26	2.0	26	92	0	88	30	24	18	26	1.98
1217559--1221555	884	4.5	883	85	4	5126	25	24	24	25	2.00
1221058--1221111	26	2.0	27	92	3	92	31	27	14	25	1.95
1221740--1221792	26	2.0	26	100	0	106	30	26	16	26	1.97
1220880--1222910	680	3.0	680	92	1	3295	23	24	25	25	2.00
1222420--1222472	26	2.0	26	100	0	106	30	26	16	26	1.97
1222562--1223858	664	2.0	662	89	1	1990	28	23	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224008--1225356	694	1.9	691	87	2	1965	27	23	22	26	2.00
1228066--1228118	26	2.0	26	92	0	88	30	26	18	24	1.98
1226314--1229748	895	3.9	891	86	3	4585	26	25	23	25	2.00
1226314--1229737	892	3.8	892	86	3	4552	26	25	23	25	2.00
1231444--1231496	26	2.0	26	88	0	79	26	24	18	30	1.98
1229693--1234053	916	4.8	898	87	4	5822	25	24	23	25	2.00
1232348--1232426	26	3.0	26	94	0	131	27	24	18	29	1.98
1233264--1233316	26	2.0	26	85	7	72	22	26	24	26	2.00
1234879--1234931	26	2.0	26	92	0	88	32	24	16	26	1.97
1235773--1235824	26	2.0	26	100	0	104	26	26	19	26	1.99
1236674--1236726	26	2.0	26	92	0	88	28	24	18	28	1.98
1237566--1237618	26	2.0	26	92	0	88	24	28	22	24	2.00
1234004--1239226	903	5.8	901	86	3	6995	25	25	23	25	2.00
1238445--1239946	732	2.0	731	90	2	2377	25	25	22	26	2.00
1240983--1241035	26	2.0	26	88	0	79	30	24	16	28	1.97
1239172--1241761	892	2.9	887	88	3	3770	24	25	23	25	2.00
1241677--1241706	4	7.5	4	92	0	51	0	70	26	3	1.03
1241017--1242417	727	1.9	719	90	2	2238	26	24	23	25	2.00
1243260--1245796	901	2.8	891	84	4	3296	26	24	23	25	2.00
1247256--1247305	26	1.9	26	91	0	82	22	30	20	28	1.98
1250073--1250125	26	2.0	26	92	0	88	24	28	22	24	2.00
1250387--1251568	592	2.0	592	86	3	1646	28	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1251563--1251615	26	2.0	26	85	0	70	24	24	20	30	1.99
1250979--1253215	904	2.5	898	87	2	3185	25	23	22	27	2.00
1253390--1254404	533	1.9	532	92	1	1692	30	22	20	26	1.98
1256235--1256287	26	2.0	26	85	0	70	30	26	15	28	1.96
1254690--1256993	882	2.6	887	85	4	3024	26	24	23	25	2.00
1256471--1258906	708	3.4	708	97	0	4563	27	22	22	27	1.99
1264280--1264332	26	2.0	26	92	0	88	28	24	20	26	1.99
1258993--1267337	899	9.4	878	83	6	9372	25	24	24	25	2.00
1266043--1266094	26	2.0	25	96	3	95	25	26	21	26	1.99
1266938--1266990	26	2.0	26	96	0	97	28	26	18	26	1.98
1267336--1275134	876	8.9	874	85	4	9502	25	24	24	25	2.00
1270310--1270362	26	2.0	26	88	0	79	30	24	16	28	1.97
1269435--1275134	901	6.4	900	85	4	7202	25	24	24	25	2.00
1271213--1271263	26	2.0	26	92	0	84	29	23	17	29	1.97
1274715--1274767	26	2.0	26	88	0	79	28	22	18	30	1.98
1275421--1275473	26	2.0	26	100	0	106	30	26	16	26	1.97
1276283--1276336	26	2.0	27	92	3	92	27	25	18	27	1.98
1277187--1277242	26	2.2	25	90	6	87	26	28	17	26	1.98
1278071--1278123	26	2.0	26	92	0	88	28	24	18	28	1.98
1278204--1278236	11	3.0	11	100	0	66	18	36	36	9	1.82
1278977--1279029	26	2.0	26	100	0	106	26	26	20	26	1.99
1279700--1279752	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1280604--1280653	26	1.9	26	95	0	91	26	28	20	26	1.99
1279620--1282094	899	2.8	894	87	3	3414	25	24	24	25	2.00
1282676--1282728	26	2.0	26	92	0	88	26	26	20	26	1.99
1284453--1284508	26	2.2	26	90	0	85	33	23	12	30	1.92
1282318--1286856	900	5.1	898	84	4	5841	25	25	23	25	2.00
1288485--1290439	733	2.7	718	87	3	2760	28	22	21	27	1.99
1290653--1290703	26	2.0	26	92	0	84	29	27	15	27	1.96
1291076--1291128	26	2.0	26	85	0	70	32	28	16	22	1.96
1291052--1292581	746	2.1	740	88	2	2287	26	23	23	25	2.00
1292721--1292773	26	2.0	26	85	7	72	24	24	20	30	1.99
1293613--1293665	26	2.0	26	96	0	97	24	26	22	26	2.00
1294509--1294561	26	2.0	26	96	0	97	28	26	18	26	1.98
1291796--1297229	902	6.1	899	87	2	7280	25	25	23	25	2.00
1295411--1295463	26	2.0	26	100	0	106	26	26	20	26	1.99
1296307--1296357	26	2.0	26	96	0	93	29	25	17	27	1.98
1299645--1299723	26	3.0	26	96	0	140	27	27	17	26	1.98
1299486--1299908	211	2.0	211	89	0	648	22	29	26	21	1.99
1299859--1299908	26	1.9	26	95	0	91	28	26	18	28	1.98
1299697--1302442	891	3.1	887	87	3	3767	25	24	24	25	2.00
1301655--1301707	26	2.0	26	88	0	79	28	24	16	30	1.97
1303256--1303308	26	2.0	26	96	0	97	26	24	20	28	1.99
1304155--1304207	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302395--1321517	878	21.4	896	75	5	12522	24	23	23	24	1.97
1305051--1305103	26	2.0	26	92	0	88	26	28	18	26	1.98
1305948--1305998	26	2.0	26	100	0	102	25	27	19	27	1.99
1306844--1306894	26	2.0	26	96	0	93	23	27	19	29	1.98
1313169--1313218	26	1.9	26	91	0	82	22	30	20	28	1.98
1314947--1314999	26	2.0	26	100	0	106	26	26	20	26	1.99
1318462--1318514	26	2.0	26	92	0	88	28	24	20	26	1.99
1320223--1320274	26	2.0	25	96	3	95	25	26	21	26	1.99
1319348--1321517	900	2.4	895	88	2	3124	24	24	24	25	2.00
1321118--1321170	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129