genome.fa.s24.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  64  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9784597--9784643	3	15.3	3	95	4	85	31	2	0	65	1.04
9784599--9784641	22	2.0	22	100	0	86	32	2	0	65	1.06
9784816--9784856	22	2.0	22	85	9	59	24	2	7	65	1.30
9784880--9784950	22	3.0	24	77	12	65	53	5	2	38	1.39
9784900--9784950	25	2.1	24	82	10	59	56	3	1	37	1.29
9785615--9785658	20	2.2	21	88	8	65	6	0	22	70	1.11
9786610--9786649	13	3.1	13	77	0	53	50	5	5	40	1.46
9786697--9786725	15	1.9	15	100	0	58	48	6	20	24	1.74
9788636--9788665	6	5.0	6	95	0	51	66	3	16	13	1.37
9789384--9789425	20	2.1	20	86	0	57	16	0	11	71	1.14
9789964--9790019	25	2.1	27	80	6	62	39	0	12	48	1.41
9793079--9793115	6	6.2	6	96	0	56	21	0	45	32	1.52
9793045--9793096	27	1.9	27	84	7	70	26	3	34	34	1.75
9800070--9800107	17	2.2	17	86	9	51	52	2	23	21	1.59
9801681--9801810	68	1.9	68	100	0	260	55	3	13	26	1.56
9805025--9805065	16	2.5	17	88	4	57	75	7	12	4	1.16
9815428--9815458	2	15.5	2	100	0	62	51	0	0	48	1.00
9818382--9818413	15	2.1	15	94	0	55	53	6	3	37	1.42
9818984--9819042	29	2.0	29	100	0	118	38	10	3	47	1.54
9818988--9819051	29	2.2	29	91	0	101	39	9	3	48	1.51
9820971--9821000	14	2.1	14	93	0	51	3	10	0	86	0.67
9827992--9828036	23	2.0	23	90	0	72	24	28	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9834419--9834453	17	2.1	16	89	5	52	31	0	34	34	1.58
9838432--9838564	11	13.2	11	68	19	69	52	1	2	43	1.22
9838456--9838497	19	2.2	20	82	4	50	54	2	2	40	1.26
9840745--9840791	7	6.9	7	80	2	51	31	38	8	21	1.83
9840830--9840902	19	3.8	19	77	12	60	43	30	2	23	1.67
9840830--9840890	12	4.8	12	73	13	50	44	32	1	21	1.62
9840789--9840920	7	20.6	7	67	18	56	44	29	1	24	1.63
9842489--9842521	17	1.9	17	100	0	66	81	6	0	12	0.85
9842720--9842911	38	5.1	38	83	1	217	35	22	7	34	1.83
9842760--9842903	75	1.9	74	83	4	182	35	23	8	32	1.85
9842722--9842909	37	5.0	37	82	3	191	35	22	7	34	1.84
9844913--9845050	72	1.9	72	94	2	242	30	21	15	32	1.94
9846787--9846835	13	3.8	12	79	10	53	83	2	12	2	0.82
9846794--9846835	13	3.2	13	82	3	57	85	2	11	0	0.68
9848489--9848828	40	8.7	38	68	18	139	31	19	15	33	1.93
9848601--9848828	39	5.7	39	71	16	146	32	18	15	34	1.92
9848602--9848838	79	3.0	79	72	14	209	32	19	14	33	1.92
9848853--9848878	4	6.5	4	100	0	52	76	0	0	23	0.78
9849718--9849980	144	1.8	142	86	4	384	31	15	12	40	1.85
9851438--9851572	26	5.2	27	71	17	83	45	34	2	18	1.62
9851462--9851511	6	7.7	6	83	16	64	46	38	0	16	1.47
9851451--9851508	6	8.7	7	78	17	54	46	39	0	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9851462--9851511	20	2.5	20	100	0	100	46	38	0	16	1.47
9851438--9851594	13	12.2	13	68	21	75	45	33	1	18	1.60
9851531--9851589	12	4.9	12	72	15	50	44	38	0	16	1.48
9851652--9851697	17	2.5	19	75	10	51	47	36	2	13	1.54
9852601--9852679	29	2.7	28	73	11	79	50	3	2	43	1.33
9852688--9852744	15	3.5	16	84	11	71	45	0	1	52	1.11
9852723--9852769	25	1.9	24	95	0	76	40	2	4	53	1.32
9852748--9852847	38	2.6	38	80	14	109	47	2	3	48	1.28
9852847--9852934	40	2.1	41	86	12	119	44	3	0	52	1.18
9856803--9856873	29	2.4	29	90	0	115	29	4	8	57	1.47
9856803--9856898	29	3.3	27	78	10	84	27	5	9	58	1.51
9856848--9856898	15	3.5	15	76	12	52	27	5	7	58	1.49
9858232--9858269	2	19.0	2	100	0	76	0	50	0	50	1.00
9861039--9861084	3	15.3	3	100	0	92	67	0	0	32	0.91
9863350--9863379	9	3.2	9	90	9	51	66	0	0	33	0.92
9864453--9864487	16	2.2	16	89	0	52	31	14	0	54	1.40
9866883--9867103	19	11.6	20	76	10	148	35	2	5	56	1.37
9866951--9867165	41	5.4	41	73	16	134	34	2	6	55	1.41
9866887--9867179	19	15.1	19	72	12	112	33	3	6	55	1.43
9866934--9867182	62	4.3	60	72	15	177	34	3	6	55	1.41
9868287--9868351	27	2.4	27	75	17	71	47	26	12	13	1.78
9869096--9869143	19	2.6	19	81	18	57	43	4	2	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9869656--9869713	22	2.6	21	81	13	62	63	3	1	31	1.21
9869917--9869959	19	2.4	18	88	11	63	79	0	0	20	0.74
9869917--9869958	16	2.7	15	82	13	50	78	0	0	21	0.75
9873912--9873945	16	2.2	16	89	5	52	20	8	32	38	1.84
9873951--9874002	20	2.6	20	85	11	63	17	1	15	65	1.36
9875165--9875194	2	15.0	2	100	0	60	0	50	0	50	1.00
9880456--9880480	2	12.5	2	100	0	50	48	0	0	52	1.00
9882411--9882475	21	3.2	21	78	4	71	63	9	0	27	1.25
9883183--9883236	27	1.9	28	85	7	74	37	5	11	46	1.63
9883452--9883516	29	2.2	30	82	15	82	46	3	12	38	1.57
9886911--9886953	17	2.7	16	82	10	52	20	6	0	72	1.08
9886901--9886962	11	5.8	11	72	12	58	19	4	0	75	0.97
9887324--9887375	21	2.5	21	90	6	79	15	3	26	53	1.59
9887430--9887455	13	2.0	13	100	0	52	23	0	15	61	1.33
9887737--9887781	23	1.9	24	82	13	58	15	2	8	73	1.18
9905274--9905350	9	7.8	10	72	13	61	33	0	7	58	1.27
9906140--9906178	20	2.0	20	94	0	69	84	0	0	15	0.62
9913157--9913415	125	2.1	126	85	4	344	32	10	21	35	1.87
9915452--9915476	13	1.9	13	100	0	50	72	12	0	16	1.13
9932736--9932777	23	2.0	23	86	13	63	66	0	2	30	1.04
9932705--9932810	52	2.0	51	90	7	167	65	0	2	32	1.07
9932781--9933108	152	2.2	149	82	6	389	46	12	4	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9933170--9933241	30	2.4	31	84	11	87	44	12	1	41	1.51
9950624--9950774	19	7.6	19	78	14	121	52	8	5	32	1.56
9950625--9950732	42	2.6	39	77	16	119	51	8	6	33	1.57
9952163--9952205	19	2.3	19	83	0	50	69	11	0	18	1.17
9952754--9952922	19	9.2	18	68	13	85	44	13	12	28	1.80
9952753--9952848	17	5.5	17	72	9	68	42	11	11	34	1.77
9952761--9952967	56	3.8	56	76	11	146	42	14	13	30	1.83
9952962--9953004	18	2.4	18	84	0	59	32	6	23	37	1.82
9953201--9953327	45	2.8	45	81	5	150	41	11	11	36	1.76
9953388--9953525	44	3.1	44	81	4	161	35	15	7	41	1.76
9954347--9954656	166	1.9	164	90	4	498	24	22	4	49	1.68
9961106--9961157	19	2.7	20	85	8	72	40	38	0	21	1.53
9962100--9962234	60	2.3	57	79	13	130	54	5	5	35	1.45
9963182--9963268	37	2.4	37	82	0	93	37	19	5	36	1.76
9963270--9963378	37	3.0	36	76	10	105	32	17	11	39	1.85
9968528--9968577	15	3.6	14	81	10	50	80	0	16	4	0.87
9968530--9968582	12	4.6	12	80	17	51	77	0	16	5	0.96
9969082--9969143	11	5.6	11	70	0	52	79	3	16	1	0.95
9970829--9970900	30	2.7	24	76	20	63	13	8	6	70	1.31
9972004--9972060	28	2.0	30	89	6	91	31	29	22	15	1.95
9974745--9974789	12	3.8	11	82	11	54	75	0	6	17	1.01
9975564--9975640	3	26.3	3	73	19	65	61	1	3	33	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9975735--9975769	13	2.8	13	87	12	56	71	5	0	22	1.07
9975748--9975782	17	2.0	18	88	5	54	68	5	2	22	1.24
9976245--9976370	56	2.3	55	80	8	139	38	18	23	19	1.93
9976381--9976570	55	3.4	55	77	2	184	43	14	22	18	1.87
9976440--9976598	56	2.9	55	80	1	183	44	16	21	16	1.86
9976386--9976598	111	1.9	111	85	1	293	43	15	21	19	1.87
9977300--9977357	17	3.4	16	83	9	71	6	6	1	84	0.84
9977311--9977362	27	1.9	27	84	7	70	5	3	5	84	0.86
9982128--9982204	14	6.0	13	76	13	79	74	1	1	23	0.97
9982119--9982197	31	2.5	31	80	10	81	75	1	1	21	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129