genome.fa.s24.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  35  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4764144--4764196	26	2.0	26	85	0	70	30	16	22	30	1.96
4764164--4765497	664	2.0	670	86	3	1889	26	20	24	28	1.99
4766576--4766628	26	2.0	26	96	0	97	28	20	24	26	1.99
4767478--4767530	26	2.0	26	88	0	79	28	20	24	26	1.99
4768375--4768427	26	2.0	26	96	0	97	26	18	26	28	1.98
4765690--4769342	894	4.1	898	86	2	4891	26	24	24	25	2.00
4769269--4769321	26	2.0	26	96	0	97	26	18	26	28	1.98
4770875--4770927	26	2.0	26	100	0	106	26	20	26	26	1.99
4770246--4771710	718	2.0	719	92	0	2434	26	23	23	26	2.00
4771593--4771645	26	2.0	26	100	0	106	26	20	26	26	1.99
4771749--4773234	720	2.1	709	89	2	2271	25	24	24	26	2.00
4773208--4773260	26	2.0	26	96	0	97	28	20	24	26	1.99
4772544--4774662	895	2.4	896	89	2	3303	25	23	24	26	2.00
4774229--4775124	460	2.0	456	89	2	1368	25	21	23	29	1.99
4776499--4776546	25	1.9	25	86	0	69	27	18	25	29	1.98
4777388--4777440	26	2.0	26	88	0	79	28	16	24	30	1.97
4779583--4779635	26	2.0	26	100	0	106	26	20	26	26	1.99
4782017--4782069	26	2.0	26	96	0	97	26	18	26	28	1.98
4784501--4784552	26	2.0	26	92	3	88	26	19	25	28	1.98
4782882--4785426	872	2.9	893	87	3	3635	26	24	24	25	2.00
4786630--4786682	26	2.0	26	92	0	88	30	20	24	24	1.99
4787531--4787581	26	2.0	26	88	0	75	29	15	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4785977--4788501	899	2.8	901	87	4	3532	26	23	24	25	2.00
4789159--4789211	26	2.0	26	96	0	97	26	18	26	28	1.98
4790036--4790435	160	2.5	159	89	0	613	20	26	31	21	1.98
4791087--4791139	26	2.0	26	96	0	97	28	20	24	26	1.99
4790217--4808356	903	20.2	896	76	10	13688	25	24	24	25	2.00
4794663--4794715	26	2.0	26	92	0	88	28	18	24	28	1.98
4796452--4796504	26	2.0	26	92	0	88	28	18	24	28	1.98
4796478--4796846	160	2.3	159	84	1	479	24	30	25	19	1.98
4797506--4797558	26	2.0	26	96	0	97	26	26	26	20	1.99
4796637--4808356	896	13.2	895	82	6	13506	25	24	24	25	2.00
4799285--4799337	26	2.0	26	85	7	72	32	20	18	28	1.97
4800190--4800240	26	2.0	26	96	0	93	23	17	31	27	1.97
4802840--4802891	26	2.0	26	92	0	86	28	17	25	28	1.97
4804605--4804657	26	2.0	26	92	7	90	28	22	22	26	1.99
4805470--4805522	26	2.0	26	92	7	90	26	16	26	30	1.97
4806336--4806388	26	2.0	26	96	0	97	28	18	26	26	1.98
4808126--4808178	26	2.0	26	96	0	97	26	18	26	28	1.98
4808597--4808649	26	2.0	26	88	0	79	32	20	20	26	1.98
4807902--4808818	471	2.0	459	86	4	1284	24	29	26	19	1.99
4808361--4812217	897	4.4	896	82	8	4513	25	24	25	24	2.00
4811246--4811296	26	2.0	26	92	0	84	27	19	25	27	1.99
4812093--4812145	26	2.0	26	92	7	90	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4816290--4816340	26	2.0	26	88	0	75	31	17	25	25	1.97
4817194--4817243	26	1.9	26	95	0	91	30	16	26	28	1.96
4818039--4818091	26	2.0	26	96	0	97	26	15	26	32	1.95
4813799--4819427	873	6.3	873	81	9	5605	25	24	24	25	2.00
4818937--4818994	26	2.2	26	90	0	89	29	27	18	24	1.98
4820123--4820175	26	2.0	26	96	0	97	26	18	28	26	1.98
4821019--4821069	26	2.0	26	96	0	93	27	21	27	23	1.99
4819566--4821990	910	2.7	889	85	3	3261	25	23	24	26	2.00
4821928--4821980	26	2.0	26	88	0	79	30	16	24	28	1.97
4824072--4824124	26	2.0	26	88	0	79	28	22	18	30	1.98
4823128--4825963	905	3.1	897	86	2	3945	24	24	24	25	2.00
4825880--4825932	26	2.0	26	92	0	88	28	26	18	26	1.98
4826431--4826483	26	2.0	26	92	0	88	28	26	16	28	1.97
4825413--4826514	551	2.0	550	86	1	1557	26	25	23	23	2.00
4827330--4827382	26	2.0	26	96	0	97	28	22	18	30	1.98
4825963--4828124	899	2.4	898	87	2	3065	26	24	23	25	2.00
4828947--4828999	26	2.0	26	92	0	88	28	26	18	26	1.98
4828479--4829581	551	2.0	551	86	2	1561	26	25	23	23	2.00
4829498--4829550	26	2.0	26	92	0	88	28	26	16	28	1.97
4830397--4830449	26	2.0	26	96	0	97	28	22	18	30	1.98
4829030--4831192	899	2.4	898	87	2	3067	26	24	23	25	2.00
4832015--4832067	26	2.0	26	92	0	88	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4831547--4832648	550	2.0	551	86	2	1536	26	25	23	23	2.00
4832565--4832617	26	2.0	26	92	0	88	28	26	16	28	1.97
4833464--4833516	26	2.0	26	96	0	97	28	22	18	30	1.98
4832098--4834259	899	2.4	900	87	3	3071	26	24	23	25	2.00
4835081--4835133	26	2.0	26	92	0	88	28	26	18	26	1.98
4835632--4835684	26	2.0	26	92	0	88	28	26	16	28	1.97
4836530--4836582	26	2.0	26	96	0	97	28	22	18	30	1.98
4835164--4837324	898	2.4	898	87	3	3024	26	24	23	25	2.00
4836556--4838729	702	3.1	700	89	4	3174	26	23	23	25	2.00
4838840--4838892	26	2.0	26	92	0	88	28	24	18	28	1.98
4839741--4839793	26	2.0	26	100	0	106	26	26	20	26	1.99
4837971--4840671	901	3.0	893	88	3	3805	25	24	24	25	2.00
4841648--4841700	26	2.0	26	100	0	106	30	26	16	26	1.97
4841889--4844491	706	3.7	707	87	3	3705	27	23	21	26	1.99
4846924--4846976	26	2.0	26	92	0	88	26	22	22	28	1.99
4847817--4847867	26	2.0	26	96	0	93	25	29	19	25	1.99
4846047--4848612	893	2.9	897	88	3	3730	25	24	23	25	2.00
4851731--4851783	26	2.0	26	89	7	81	28	20	20	30	1.98
4849961--4852507	899	2.8	881	86	5	3545	26	24	23	25	2.00
4854143--4854221	26	3.0	26	88	0	122	30	25	16	27	1.97
4852514--4857567	905	5.7	887	82	9	5712	25	24	24	25	2.00
4855890--4855942	26	2.0	26	92	0	88	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4856793--4856845	26	2.0	26	92	0	88	26	22	20	30	1.98
4858402--4858454	26	2.0	26	89	7	81	30	22	18	28	1.98
4859304--4859356	26	2.0	26	92	0	88	28	26	16	28	1.97
4857539--4867540	901	11.1	900	75	10	7717	25	24	23	25	2.00
4862100--4862152	26	2.0	26	88	0	79	28	24	16	30	1.97
4863006--4863058	26	2.0	26	96	0	97	24	26	22	26	2.00
4863901--4863953	26	2.0	26	96	0	97	26	24	20	28	1.99
4862090--4867540	895	6.1	892	83	6	6337	25	24	24	25	2.00
4865661--4865718	26	2.2	26	90	0	89	24	18	27	29	1.98
4866575--4866626	27	1.9	27	88	7	79	30	26	13	28	1.94
4867438--4867487	26	1.9	26	95	0	91	28	26	16	30	1.96
4869345--4872167	700	4.0	701	82	8	3240	26	22	24	26	2.00
4872141--4872193	26	2.1	26	96	3	99	24	16	26	32	1.97
4874045--4874097	26	2.0	26	100	0	106	26	20	26	26	1.99
4873164--4882862	903	10.9	897	83	5	11615	25	24	24	25	2.00
4874948--4875000	26	2.0	26	100	0	106	26	20	26	26	1.99
4876698--4876750	26	2.0	26	96	0	97	28	20	24	26	1.99
4877601--4877653	26	2.0	26	96	0	97	26	18	26	28	1.98
4879365--4879417	26	2.0	26	88	0	79	30	18	22	28	1.98
4880264--4880316	26	2.0	26	96	0	97	28	18	26	26	1.98
4878642--4882862	899	4.7	897	85	4	5441	25	23	24	25	2.00
4881164--4881216	26	2.0	26	92	0	88	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4883701--4883750	26	1.9	26	95	0	91	28	18	28	26	1.98
4882242--4883606	744	1.9	730	90	3	2038	25	23	24	26	2.00
4882888--4890774	902	8.8	899	87	3	10298	25	24	24	25	2.00
4885476--4885528	26	2.0	26	96	0	97	26	18	26	28	1.98
4886378--4886430	26	2.0	26	96	0	97	26	18	26	28	1.98
4888181--4888239	26	2.3	26	85	5	86	27	18	25	28	1.98
4890782--4890834	26	2.0	26	92	0	88	28	18	24	28	1.98
4889968--4891575	799	2.0	793	85	5	2137	24	23	25	26	2.00
4892536--4892588	26	2.0	26	92	0	88	24	18	28	28	1.98
4893439--4893488	26	1.9	26	87	0	73	26	16	28	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129