genome.fa.s24.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  112  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18749651--18749716	21	3.1	21	97	0	123	37	16	9	36	1.81
18750109--18750152	23	1.9	23	90	0	70	27	22	4	45	1.72
18751015--18751071	10	6.0	10	75	19	59	10	15	1	71	1.21
18751015--18751070	18	3.1	18	82	5	76	10	14	1	73	1.18
18751012--18751070	29	2.0	29	87	12	86	10	13	1	74	1.14
18751419--18751466	24	2.0	24	83	0	60	6	18	2	72	1.15
18756622--18756843	53	4.1	54	76	10	204	27	11	9	52	1.68
18756611--18756744	51	2.6	52	76	12	123	27	10	11	50	1.70
18756645--18756863	110	2.0	109	84	4	289	24	12	9	54	1.66
18757466--18757494	12	2.3	13	94	5	51	72	6	0	20	1.07
18757464--18757495	13	2.4	14	85	15	50	71	6	0	21	1.07
18758341--18758384	10	4.5	10	80	2	54	11	11	0	77	1.00
18758341--18758384	19	2.3	19	88	7	63	11	11	0	77	1.00
18767333--18767392	11	5.1	12	75	16	54	23	0	3	73	0.98
18767344--18767400	25	2.2	26	84	9	73	24	0	3	71	1.01
18767354--18767412	29	2.0	29	81	12	68	23	3	3	69	1.19
18778074--18778102	15	2.0	15	93	6	51	82	13	3	0	0.79
18779203--18779234	12	2.4	14	90	10	50	21	0	9	68	1.17
18779984--18780008	13	1.9	13	100	0	50	0	28	0	72	0.86
18780219--18780262	21	2.1	21	100	0	88	43	9	13	34	1.76
18782919--18782953	13	2.7	13	90	0	52	88	0	2	8	0.61
18786512--18786591	2	40.5	2	84	2	99	45	2	0	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18787657--18787718	29	2.1	29	90	0	97	66	6	3	24	1.30
18789007--18789061	14	3.9	14	77	13	51	25	0	3	70	1.03
18788998--18789068	25	2.8	26	80	16	78	22	0	2	74	0.94
18789001--18789068	31	2.3	29	85	9	86	23	0	2	73	0.97
18812317--18812351	17	2.1	17	89	10	54	62	0	2	34	1.10
18812398--18812480	27	3.1	27	70	13	64	28	3	2	65	1.22
18812455--18812494	21	1.9	21	94	0	71	40	0	0	60	0.97
18813086--18813120	18	1.9	18	88	0	52	45	0	0	54	0.99
18813130--18813184	12	4.8	12	73	8	51	41	3	0	54	1.18
18813259--18813301	11	3.6	11	77	17	50	41	9	0	48	1.35
18815795--18815840	18	2.4	19	82	13	51	34	4	2	58	1.30
18817818--18817885	27	2.5	28	81	9	79	44	0	2	52	1.16
18818609--18818656	24	2.0	24	83	4	60	43	2	10	43	1.50
18819274--18819356	29	2.8	29	75	21	82	42	1	0	56	1.07
18819482--18819523	10	4.5	10	80	14	54	66	0	0	33	0.92
18819549--18819598	12	4.2	12	80	10	57	44	2	2	52	1.24
18823067--18823104	3	12.7	3	100	0	76	34	0	0	65	0.93
18825238--18825285	11	4.5	11	84	10	55	0	10	2	87	0.62
18825244--18825282	8	4.8	8	90	3	60	0	7	2	89	0.56
18825238--18825274	19	2.0	18	94	5	65	0	8	0	91	0.41
18825242--18825282	17	2.4	17	91	4	64	0	7	2	90	0.54
18825241--18825274	1	34.0	1	87	0	50	0	5	0	94	0.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18826408--18826762	178	2.0	179	97	0	667	30	21	14	33	1.94
18830229--18830280	18	3.1	18	71	21	58	46	1	3	48	1.31
18832900--18832954	21	2.4	25	88	11	82	45	0	0	54	0.99
18833365--18833438	38	1.9	38	97	0	139	43	4	6	45	1.49
18833363--18833428	21	3.3	21	65	16	59	45	4	6	43	1.49
18833381--18833447	18	3.4	20	70	17	68	44	1	5	47	1.36
18834066--18834095	10	3.0	10	95	0	51	36	23	20	20	1.95
18840872--18840952	29	2.8	28	86	5	99	59	1	2	37	1.19
18840872--18840952	30	2.7	30	88	5	121	59	1	2	37	1.19
18854691--18854726	2	18.0	2	100	0	72	0	50	0	50	1.00
18856311--18856372	31	2.0	31	87	0	88	45	16	22	16	1.85
18857640--18857670	14	2.2	14	100	0	62	19	19	16	45	1.86
18865654--18865982	156	2.1	156	97	0	613	23	12	24	39	1.90
18871418--18871469	22	2.4	21	90	9	79	51	0	0	48	1.00
18871417--18871467	20	2.5	21	85	14	72	52	0	0	47	1.00
18873095--18873150	24	2.3	24	84	0	76	28	1	19	50	1.58
18877998--18878036	20	2.0	20	89	0	60	20	10	15	53	1.70
18878724--18878782	2	29.5	2	89	0	91	49	3	0	47	1.18
18878711--18878780	32	2.2	32	100	0	140	47	5	0	47	1.26
18888126--18888160	14	2.4	15	85	4	54	57	2	0	40	1.14
18891320--18891344	13	1.9	13	100	0	50	80	12	0	8	0.92
18891305--18891329	1	25.0	1	100	0	50	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18891387--18891506	38	3.5	38	68	29	131	27	13	18	40	1.88
18891388--18891549	64	2.5	64	96	2	299	27	15	16	40	1.89
18891486--18891539	26	2.1	26	100	0	108	29	11	18	40	1.85
18892726--18892791	33	2.0	33	96	0	123	31	12	10	45	1.76
18894784--18894830	22	2.1	23	92	4	78	29	10	10	48	1.71
18896454--18896492	16	2.4	17	86	4	53	41	0	0	58	0.98
18897486--18897537	19	2.6	19	87	6	68	25	1	0	73	0.94
18897603--18897643	18	2.2	19	86	4	57	60	2	7	29	1.36
18897716--18897767	21	2.5	21	100	0	104	50	7	3	38	1.50
18898768--18898820	16	3.3	15	84	12	61	30	1	1	66	1.13
18898792--18898827	16	2.3	16	95	4	65	36	0	0	63	0.94
18899003--18899040	20	1.9	20	94	0	67	21	0	5	73	1.02
18899690--18899851	24	7.0	24	74	16	130	32	3	8	55	1.47
18899690--18899861	71	2.5	64	82	14	195	33	3	7	55	1.45
18899694--18899851	47	3.5	45	76	14	148	32	3	8	55	1.47
18899836--18900090	55	4.7	55	86	1	327	28	5	12	54	1.58
18899977--18900022	22	2.0	23	87	4	67	23	2	10	63	1.38
18901472--18901512	20	2.0	20	100	0	82	46	4	9	39	1.58
18901474--18901521	20	2.4	20	92	0	78	41	6	12	39	1.68
18901559--18901717	79	2.0	79	96	0	291	32	14	20	32	1.93
18902457--18902488	10	3.2	10	90	0	55	15	0	3	81	0.82
18902457--18902496	19	2.1	20	86	9	57	17	0	2	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18903764--18904048	41	7.0	41	81	7	233	42	16	17	23	1.88
18903765--18904049	82	3.5	81	84	4	308	42	16	17	23	1.88
18903916--18904064	41	3.6	41	85	5	126	41	13	18	26	1.87
18905423--18905473	21	2.3	21	86	6	66	13	5	0	80	0.89
18909716--18909752	20	1.9	18	89	10	56	29	10	10	48	1.72
18909777--18909918	47	3.0	46	80	10	146	30	3	9	55	1.49
18909758--18909918	24	7.0	24	74	15	144	30	3	9	55	1.50
18909777--18909971	47	4.0	45	74	16	135	30	3	10	55	1.51
18909870--18910035	53	3.1	52	70	17	126	30	4	9	54	1.53
18909939--18909991	20	2.5	23	79	14	60	32	7	11	49	1.67
18909907--18910089	55	3.4	55	86	4	241	30	6	10	53	1.59
18909987--18910032	23	2.0	23	91	4	76	26	6	8	58	1.52
18909986--18910046	20	2.9	20	81	11	68	27	6	9	55	1.57
18909907--18910100	53	3.6	54	84	5	225	30	6	10	52	1.60
18909897--18910093	108	1.8	108	84	4	272	31	6	9	52	1.58
18910064--18910157	24	4.0	24	80	9	81	30	4	7	57	1.46
18910275--18910324	24	2.1	24	82	14	59	36	8	14	42	1.74
18916713--18916742	16	1.9	15	93	6	51	36	0	0	63	0.95
18918474--18918537	27	2.4	27	97	0	119	12	48	23	15	1.79
18919780--18919831	15	3.5	15	76	10	54	61	1	0	36	1.07
18920173--18920219	18	2.6	19	76	10	53	51	4	4	40	1.41
18921648--18921687	11	3.5	11	83	6	53	62	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18921791--18921837	18	2.6	19	76	10	53	51	2	4	42	1.33
18926143--18926208	3	22.0	3	100	0	132	33	0	0	66	0.92
18926771--18927374	156	3.9	154	85	4	755	33	16	13	35	1.88
18926771--18927345	310	1.8	315	87	4	867	33	17	13	35	1.88
18931499--18931558	19	3.2	18	81	6	57	30	5	6	58	1.45
18934815--18934854	20	2.0	20	85	9	55	35	0	2	62	1.09
18934805--18934874	26	2.7	25	80	14	63	32	1	4	61	1.24
18938568--18938612	19	2.3	19	84	3	54	53	0	2	44	1.13
18946234--18946274	18	2.3	19	79	12	50	46	0	2	51	1.14
18946287--18946354	29	2.3	30	82	7	86	54	2	1	41	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129