genome.fa.s24.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  74  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11738739--11738911	96	1.8	94	83	6	233	42	13	6	38	1.70
11741764--11741849	19	4.6	19	71	8	77	40	27	6	24	1.81
11741764--11741849	37	2.3	38	80	9	97	40	27	6	24	1.81
11741891--11741942	19	2.7	18	77	19	52	51	21	9	17	1.73
11743715--11743753	20	1.9	21	85	15	55	53	0	28	17	1.44
11744063--11744174	56	1.9	55	81	12	127	43	8	8	38	1.67
11744199--11744465	94	2.8	93	75	12	247	41	13	8	37	1.74
11747311--11747396	19	4.6	19	71	8	77	40	27	6	24	1.81
11747311--11747396	37	2.3	38	80	9	97	40	27	6	24	1.81
11747439--11747490	19	2.7	18	77	19	52	51	23	9	15	1.72
11748284--11748322	17	2.3	17	86	0	51	5	2	12	79	1.00
11748292--11748330	17	2.4	17	86	4	53	5	5	7	82	0.96
11750749--11750786	20	1.9	20	89	10	60	39	2	0	57	1.12
11750815--11750844	15	1.9	16	93	6	53	36	0	0	63	0.95
11751111--11751196	22	3.8	22	89	7	120	50	1	0	48	1.08
11751121--11751217	45	2.2	45	83	10	119	53	1	0	45	1.07
11751120--11751219	43	2.3	44	81	11	116	54	1	0	45	1.06
11751185--11751219	18	1.9	18	88	0	52	62	0	0	37	0.95
11751655--11751697	16	2.7	16	77	0	50	37	0	2	60	1.10
11751685--11751736	22	2.5	22	90	6	81	48	0	0	51	1.00
11754051--11754081	16	1.9	16	93	0	53	22	0	9	67	1.19
11754304--11754337	13	2.6	13	85	0	50	50	0	2	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11755842--11755887	15	3.1	15	77	0	56	67	4	2	26	1.21
11759041--11759075	16	2.1	18	89	10	56	40	0	0	60	0.97
11760108--11760152	22	2.0	23	87	12	67	35	2	0	62	1.08
11760204--11760241	15	2.6	15	83	4	51	60	0	0	39	0.97
11760238--11760266	10	2.7	11	94	5	51	55	0	0	44	0.99
11760637--11760663	2	13.5	2	100	0	54	51	0	0	48	1.00
11760966--11761039	9	8.6	9	70	19	50	47	0	2	50	1.15
11760967--11761039	25	2.9	26	87	4	105	46	0	2	50	1.15
11761013--11761100	19	4.9	18	73	14	58	51	0	3	45	1.18
11761128--11761440	18	18.7	17	69	21	113	42	0	2	54	1.15
11761128--11761361	54	4.4	54	73	17	202	43	0	1	55	1.10
11761133--11761418	99	2.8	101	75	15	270	42	0	3	54	1.16
11761278--11761365	29	2.9	28	77	14	86	45	0	2	52	1.13
11761192--11761365	52	3.5	46	75	19	136	44	0	1	54	1.10
11762192--11762234	17	2.5	18	81	11	54	48	0	2	48	1.14
11765766--11765951	89	2.1	88	90	5	286	47	5	0	46	1.29
11767548--11767597	2	26.5	2	80	11	61	50	0	50	0	1.00
11768107--11768151	12	3.8	12	84	0	63	46	6	37	8	1.61
11776210--11776244	17	1.9	19	88	11	56	45	0	0	54	0.99
11776203--11776246	19	2.3	19	80	7	54	45	0	0	54	0.99
11776463--11776497	16	2.2	16	89	0	52	40	0	0	60	0.97
11776498--11776546	21	2.4	21	80	6	57	69	6	2	22	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11776505--11776550	20	2.2	21	88	3	67	71	6	0	21	1.08
11777988--11778028	20	2.0	20	100	0	82	24	9	4	60	1.47
11777990--11778036	20	2.3	20	92	0	76	29	10	2	57	1.44
11778897--11778947	22	2.4	22	77	9	61	27	0	5	66	1.14
11780107--11780179	16	4.6	16	83	10	87	56	5	2	35	1.37
11780910--11780963	19	2.9	18	72	8	54	55	7	3	33	1.45
11783685--11783752	29	2.3	29	92	2	109	36	5	2	54	1.40
11783685--11783770	29	2.9	30	84	11	106	39	5	2	52	1.38
11783757--11783801	16	2.7	16	82	6	54	53	2	0	44	1.13
11783778--11783859	29	2.9	27	83	9	92	59	1	2	36	1.18
11790497--11790525	3	9.7	3	100	0	58	68	0	0	31	0.89
11790993--11791030	11	3.7	11	83	16	55	42	0	0	57	0.98
11790993--11791027	14	2.6	14	95	4	63	42	0	0	57	0.99
11791892--11791921	4	7.8	4	92	7	53	76	0	0	23	0.78
11791955--11792294	57	5.9	55	76	13	281	35	11	6	46	1.66
11794277--11794307	13	2.4	13	88	0	53	67	3	6	22	1.28
11794498--11794775	118	2.5	110	84	11	336	28	17	12	42	1.85
11794707--11794741	18	1.9	18	94	0	61	2	0	5	91	0.50
11794706--11794742	19	1.9	19	89	10	58	2	0	5	91	0.48
11794747--11795026	41	6.9	41	88	7	421	35	23	17	22	1.95
11794747--11795026	83	3.5	83	88	6	425	35	23	17	22	1.95
11794967--11795082	59	2.0	60	86	6	166	37	21	16	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11795031--11795175	42	3.5	42	84	9	174	39	20	15	25	1.91
11796877--11796955	10	7.3	10	75	18	61	8	16	0	74	1.05
11796877--11796955	21	3.6	22	83	8	99	8	16	0	74	1.05
11796877--11796955	11	7.2	11	78	14	83	8	16	0	74	1.05
11805028--11805067	17	2.3	17	91	4	62	42	0	0	57	0.98
11805331--11805376	22	2.1	22	84	8	58	73	6	0	19	1.04
11806781--11806827	20	2.3	20	85	3	58	25	8	6	59	1.50
11806793--11806831	20	2.0	20	100	0	78	23	10	5	61	1.48
11807129--11807164	17	2.1	17	90	10	56	25	0	0	75	0.81
11807704--11807754	23	2.3	23	74	16	54	27	0	5	66	1.14
11808913--11808985	16	4.6	16	83	10	87	56	5	2	35	1.37
11808894--11808985	32	2.9	32	75	12	91	55	7	4	32	1.48
11809715--11809768	19	2.9	18	72	8	54	55	7	3	33	1.45
11810848--11810923	30	2.5	30	79	8	91	51	1	6	40	1.36
11811208--11811251	23	2.0	23	81	4	54	47	4	4	43	1.44
11811280--11811367	27	3.1	28	82	10	92	55	1	5	37	1.31
11811378--11811407	2	15.5	2	93	6	53	46	0	0	53	1.00
11812654--11812722	30	2.3	30	92	0	111	36	5	2	55	1.39
11812655--11812745	30	3.0	30	87	6	105	39	6	2	51	1.40
11812727--11812771	16	2.7	16	82	6	54	53	2	0	44	1.13
11812748--11812829	29	2.9	27	83	9	92	59	1	2	36	1.18
11819464--11819495	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11819965--11819993	14	2.1	14	100	0	58	41	0	0	58	0.98
11820919--11821257	60	5.8	57	77	13	339	35	10	6	46	1.65
11820919--11821261	119	2.9	115	82	11	453	35	10	6	47	1.65
11823240--11823270	13	2.4	13	88	0	53	67	3	6	22	1.28
11823459--11823766	118	2.8	112	81	10	348	29	17	12	39	1.87
11823708--11823993	41	6.9	41	91	2	473	35	24	18	22	1.96
11823708--11823993	83	3.5	82	92	1	473	35	24	18	22	1.96
11823933--11824050	59	2.0	61	88	3	177	37	21	16	24	1.94
11823993--11824141	41	3.6	41	91	1	228	39	20	14	24	1.91
11823891--11824090	100	2.0	102	92	2	332	37	22	16	23	1.93
11825846--11825922	22	3.6	22	84	10	106	7	16	0	75	1.03
11825846--11825922	11	7.2	11	81	12	90	7	16	0	75	1.03
11825846--11825922	10	7.2	11	70	16	54	7	16	0	75	1.03
11825846--11825922	32	2.4	32	82	8	104	7	16	0	75	1.03
11825846--11825926	21	3.9	21	78	15	87	8	18	0	72	1.09
11833599--11833630	1	32.0	1	100	0	64	0	100	0	0	0.00
11835801--11835830	3	9.7	3	92	7	51	66	0	0	33	0.92
11836301--11836335	2	17.5	2	93	0	61	45	0	0	54	0.99
11837253--11837597	61	5.9	56	78	12	329	35	11	7	45	1.68
11839585--11839615	13	2.4	13	88	0	53	67	3	6	22	1.28
11839798--11840110	119	2.8	109	82	12	372	28	17	12	41	1.86
11840012--11840047	1	36.0	1	88	0	54	0	0	5	94	0.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11840052--11840339	41	6.9	41	88	6	427	35	24	18	21	1.96
11840052--11840339	83	3.5	82	89	4	427	35	24	18	21	1.96
11840339--11840463	44	2.9	43	86	5	164	40	22	12	24	1.89
11842210--11842285	10	7.3	10	79	16	75	7	17	0	75	1.04
11842210--11842285	20	3.6	21	82	12	102	7	17	0	75	1.04
11842210--11842285	31	2.4	32	80	10	95	7	17	0	75	1.04
11842220--11842263	18	2.3	19	84	7	54	4	15	0	79	0.89
11842201--11842285	11	8.4	10	70	21	54	8	16	0	75	1.03
11842210--11842289	21	3.9	21	80	12	94	8	18	0	72	1.10
11846658--11846688	4	7.8	4	100	0	62	77	0	0	22	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129