genome.fa.s24.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  113  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18947247--18947275	2	14.5	2	100	0	58	48	0	0	51	1.00
18962171--18962212	9	4.7	9	91	8	68	54	2	0	42	1.13
18962172--18962205	17	2.0	17	100	0	68	58	0	0	41	0.98
18966177--18966221	23	2.0	23	95	0	81	13	20	22	44	1.85
18970041--18970170	33	3.9	33	73	4	100	18	20	30	31	1.96
18970074--18970451	66	5.5	66	71	12	235	20	19	27	32	1.97
18970102--18970243	75	1.9	75	89	0	221	18	19	29	33	1.95
18970239--18970294	18	3.1	18	76	0	58	26	16	28	28	1.97
18970350--18970438	15	5.5	15	72	15	70	20	23	26	29	1.99
18970338--18970462	33	3.8	32	81	6	133	20	20	27	32	1.97
18978595--18978833	119	2.0	119	92	0	397	24	22	36	16	1.94
18980039--18980081	2	21.5	2	100	0	86	51	0	0	48	1.00
18984966--18985077	53	2.1	53	89	0	179	33	5	32	29	1.80
18986068--18986107	17	2.4	17	83	8	55	45	2	0	52	1.14
18986581--18986634	27	2.0	26	82	10	65	48	1	1	48	1.23
18987316--18987366	14	3.6	14	78	7	59	72	1	0	25	0.95
18988741--18989392	357	1.8	359	90	2	1069	39	9	4	45	1.58
18989126--18989478	185	1.9	185	92	0	598	37	9	3	48	1.54
18989356--18989442	30	2.9	30	81	3	86	37	8	4	49	1.53
18989481--18989564	29	3.0	28	76	11	82	61	3	8	26	1.40
18990084--18990121	20	1.9	20	84	10	51	55	5	0	39	1.23
18990388--18990431	19	2.3	19	96	0	79	34	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18990555--18990588	18	1.9	17	88	5	50	23	5	0	70	1.09
18990801--18990831	16	1.9	16	93	0	53	61	0	0	38	0.96
18990875--18990911	15	2.4	16	86	8	51	48	0	0	51	1.00
18990872--18990906	18	1.9	18	88	0	52	51	0	0	48	1.00
18990893--18990931	11	3.2	12	89	10	62	41	0	0	58	0.98
18990880--18990935	28	2.1	26	90	6	85	41	0	0	58	0.98
18997682--18998416	368	2.0	370	92	2	1237	36	10	15	37	1.82
19005530--19005554	11	2.3	11	100	0	50	36	8	12	44	1.71
19005916--19005951	18	2.0	18	100	0	72	27	22	11	38	1.88
19009637--19009710	11	6.7	11	68	11	53	36	0	17	45	1.49
19009635--19009710	33	2.3	33	95	0	125	36	0	18	44	1.50
19015452--19015523	30	2.4	30	82	15	87	45	1	0	52	1.09
19016130--19016174	24	1.9	24	86	4	65	31	0	6	62	1.21
19020050--19020505	227	2.0	227	96	0	849	24	18	15	41	1.89
19036524--19036599	28	2.5	30	81	8	84	42	0	3	53	1.19
19042158--19042234	38	2.0	38	92	0	127	27	7	29	35	1.85
19051878--19051903	12	2.2	12	100	0	52	46	0	7	46	1.31
19055285--19055309	13	1.9	13	100	0	50	40	12	0	48	1.40
19060811--19060840	2	15.0	2	100	0	60	50	0	0	50	1.00
19062404--19062940	61	9.0	59	80	11	503	40	11	4	43	1.61
19062404--19062940	119	4.5	117	83	8	597	40	11	4	43	1.61
19062810--19062906	33	3.1	33	67	18	80	37	8	3	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19064868--19065292	42	10.0	42	77	9	325	43	18	13	24	1.86
19064838--19065162	45	7.5	43	79	7	338	45	19	12	22	1.84
19064833--19065213	131	3.0	128	79	6	328	44	19	12	23	1.85
19064845--19065261	123	3.3	126	77	9	296	44	18	13	23	1.85
19065555--19065610	20	2.8	20	97	2	103	35	25	8	30	1.86
19065905--19065954	21	2.4	22	76	10	59	40	10	6	44	1.63
19066356--19066542	63	3.0	63	89	0	284	29	21	9	39	1.85
19067229--19067282	21	2.5	20	74	11	54	11	7	0	81	0.87
19067233--19067304	28	2.5	28	82	13	76	11	12	0	76	1.02
19070383--19070428	21	2.2	21	80	3	58	17	2	2	78	0.96
19072017--19072065	14	3.6	14	81	8	57	34	0	2	63	1.06
19072032--19072065	15	2.3	15	90	10	52	35	0	0	64	0.94
19072017--19072068	27	1.9	27	88	0	77	38	0	1	59	1.08
19072054--19072621	118	4.8	119	82	7	547	42	5	12	39	1.64
19072440--19072472	16	2.0	17	88	5	50	51	6	0	42	1.26
19072054--19072621	58	9.6	59	79	7	509	42	5	12	39	1.64
19075181--19075261	41	2.0	41	92	0	135	61	6	8	23	1.47
19078894--19078934	3	14.0	3	94	5	75	31	0	0	68	0.90
19085845--19085874	11	2.7	11	89	0	51	53	0	0	46	1.00
19086605--19086648	3	14.7	3	100	0	88	34	0	0	65	0.93
19087079--19087374	116	2.5	115	87	3	407	19	13	13	53	1.72
19087309--19087439	65	2.0	65	96	0	244	21	19	9	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19091380--19091450	22	3.2	23	75	16	69	35	1	2	60	1.20
19091389--19091454	23	3.0	23	73	20	68	36	0	1	62	1.05
19091454--19091523	28	2.5	28	75	15	65	51	1	2	44	1.25
19093721--19093764	23	1.9	23	90	0	70	50	2	6	40	1.42
19093764--19093798	4	8.8	4	93	0	61	28	0	20	51	1.47
19098275--19098335	25	2.5	25	84	7	72	45	1	11	40	1.50
19099621--19099658	14	2.9	14	84	7	53	68	10	0	21	1.19
19099805--19099850	21	2.2	21	84	0	56	21	10	17	50	1.77
19099829--19099899	30	2.4	30	97	0	133	12	19	16	50	1.77
19101227--19101264	15	2.4	17	86	8	53	65	7	2	23	1.32
19101394--19101586	88	2.2	88	87	1	280	35	10	16	37	1.83
19101505--19101796	130	2.3	129	86	5	394	32	9	17	40	1.82
19107100--19107188	44	2.0	44	100	0	178	41	15	17	24	1.89
19115000--19115031	2	16.0	2	93	0	55	53	0	46	0	1.00
19128643--19129547	453	2.0	452	90	3	1428	36	9	8	44	1.68
19129540--19129614	38	2.0	38	100	0	150	49	8	13	29	1.70
19131671--19131872	22	9.2	22	74	16	89	48	4	9	37	1.57
19131766--19131874	22	5.0	22	79	12	98	51	4	8	35	1.53
19131893--19131953	22	2.8	22	80	14	72	62	8	3	26	1.39
19131988--19132105	22	5.4	22	73	6	96	48	3	11	37	1.55
19132109--19132244	69	2.0	70	95	1	247	27	15	8	48	1.73
19132447--19132484	19	2.0	20	89	5	60	50	0	10	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19132553--19132603	21	2.5	20	79	17	59	60	7	0	31	1.25
19132599--19132631	15	2.2	15	89	10	50	48	0	12	39	1.40
19132592--19132723	22	5.8	22	68	9	77	51	3	9	36	1.49
19132494--19132738	22	11.0	22	66	14	56	52	4	7	35	1.51
19132641--19132853	22	9.8	22	72	10	71	50	6	8	35	1.58
19133039--19133097	22	2.7	22	78	0	64	45	10	11	32	1.74
19133072--19133143	22	3.3	22	82	0	90	40	5	12	41	1.66
19133153--19133326	22	8.0	21	75	14	122	47	5	7	39	1.56
19133144--19133339	66	3.0	65	76	12	170	47	5	7	39	1.54
19133553--19133646	22	4.3	22	71	5	73	47	3	9	39	1.52
19133755--19133906	22	6.9	22	77	8	112	48	7	3	39	1.51
19133755--19133941	66	2.8	66	84	6	211	49	7	4	39	1.51
19133753--19133938	44	4.2	42	72	16	119	48	7	4	39	1.51
19133866--19133941	22	3.5	22	76	3	73	55	5	2	36	1.37
19133808--19133941	11	12.2	11	66	11	60	51	7	3	37	1.48
19134188--19134230	22	2.0	22	90	0	68	46	2	4	46	1.36
19135920--19135961	19	2.3	18	84	12	50	35	2	0	61	1.09
19140915--19141004	29	3.0	31	81	6	112	57	1	1	40	1.13
19142160--19142199	20	2.0	21	85	5	55	52	10	12	25	1.70
19150958--19151020	32	1.9	33	83	3	83	36	0	3	60	1.13
19151846--19151885	21	2.0	21	90	9	66	35	0	0	65	0.93
19151833--19151905	29	2.4	30	77	6	76	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19152365--19152399	9	3.9	9	84	0	52	51	0	8	40	1.33
19152759--19152798	21	2.0	20	85	14	55	42	0	0	57	0.98
19152920--19152961	15	2.8	15	82	13	59	14	9	2	73	1.18
19153769--19153804	14	2.6	14	100	0	72	61	0	0	38	0.96
19157555--19157584	15	1.9	16	93	6	53	13	0	3	83	0.77
19157821--19157867	7	6.9	7	80	4	60	25	2	4	68	1.19
19157821--19157867	21	2.3	20	92	3	76	25	2	4	68	1.19
19158725--19158749	11	2.3	11	100	0	50	44	8	8	40	1.63
19160687--19160724	20	1.9	20	94	0	67	39	0	7	52	1.31
19162325--19162379	28	1.9	29	88	3	85	54	10	1	32	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129