genome.fa.s24.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  77  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12221759--12222092	42	8.0	42	80	9	251	26	15	19	37	1.92
12221802--12222091	83	3.5	81	82	7	214	26	15	19	37	1.92
12221788--12222141	42	8.4	41	77	9	186	25	16	20	37	1.93
12221946--12222141	86	2.3	86	80	7	211	25	17	20	36	1.94
12221977--12222145	44	3.9	44	82	2	180	24	16	21	37	1.93
12222160--12222207	5	9.6	5	82	8	62	83	14	0	2	0.74
12222399--12222477	6	12.0	6	75	11	50	26	1	0	72	0.93
12222402--12222477	26	2.8	27	84	6	91	27	1	0	71	0.95
12222407--12222545	9	15.4	9	69	23	62	25	4	0	69	1.12
12222399--12222577	34	5.5	31	71	17	105	25	4	1	69	1.14
12222464--12222513	25	2.1	24	82	10	59	16	8	2	74	1.15
12222439--12222521	43	2.0	43	83	11	109	20	6	1	72	1.13
12222440--12222575	17	8.3	18	71	20	70	25	5	1	68	1.18
12222842--12222884	14	3.1	14	80	9	52	20	0	16	62	1.32
12223392--12223502	12	9.0	12	70	18	68	22	0	2	73	1.01
12223461--12223501	6	6.8	6	84	15	50	17	0	0	82	0.66
12223531--12223709	89	2.0	90	91	1	288	42	8	14	34	1.77
12223589--12223650	31	2.0	31	100	0	124	45	9	12	32	1.75
12223620--12223933	58	5.4	57	82	5	371	43	7	14	34	1.74
12236243--12236313	13	5.4	13	76	15	58	56	0	0	43	0.99
12236251--12236313	28	2.3	28	81	8	76	57	0	0	42	0.99
12239055--12239081	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12239670--12239703	17	2.1	17	88	5	52	44	0	0	55	0.99
12243185--12243266	39	2.1	38	86	8	112	21	1	53	23	1.53
12243204--12243278	39	1.9	39	86	5	107	20	0	58	21	1.39
12245054--12245140	3	29.0	3	85	9	106	59	0	1	39	1.05
12247825--12247858	16	2.1	16	89	10	52	23	0	2	73	0.97
12251376--12251411	16	2.1	18	90	10	58	52	8	8	30	1.61
12256049--12256133	44	1.9	44	92	0	143	37	21	17	23	1.94
12259991--12260016	13	2.0	13	100	0	52	53	7	7	30	1.57
12260208--12260250	13	3.2	13	90	3	59	65	0	0	34	0.93
12260209--12260251	20	2.1	21	87	12	63	65	0	0	34	0.93
12260208--12260250	7	6.5	6	87	12	50	65	0	0	34	0.93
12260233--12260289	4	14.2	4	83	7	53	71	5	0	22	1.05
12260873--12260920	23	2.1	22	84	3	60	62	14	8	14	1.53
12262078--12262178	45	2.2	44	80	3	130	41	12	14	30	1.84
12262474--12262538	23	3.0	21	80	8	58	53	10	4	30	1.56
12262469--12262635	46	3.7	46	74	7	126	46	14	5	32	1.70
12262554--12262751	46	4.3	45	75	4	155	39	13	8	38	1.76
12268690--12268732	14	3.0	14	89	3	59	67	0	2	30	1.03
12268712--12268763	4	12.2	4	84	11	68	75	0	1	23	0.91
12269790--12269831	22	2.0	20	86	9	57	69	7	0	23	1.13
12271346--12271400	29	2.0	27	82	10	67	54	3	9	32	1.49
12272018--12272066	20	2.6	19	78	9	55	38	2	0	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12272709--12272751	19	2.2	20	87	8	61	41	2	0	55	1.12
12272825--12272874	15	3.4	14	83	8	64	48	0	0	52	1.00
12272825--12272874	7	6.9	7	88	6	64	48	0	0	52	1.00
12272936--12273015	16	4.6	16	72	20	54	30	0	2	67	1.04
12272939--12273019	34	2.3	36	85	6	103	32	0	2	65	1.06
12273386--12273429	23	2.0	23	81	4	54	56	2	2	38	1.24
12285102--12285139	19	2.0	19	100	0	76	15	26	10	47	1.78
12289985--12290020	19	2.0	19	89	10	58	69	5	0	25	1.10
12290039--12290113	32	2.4	31	75	20	75	77	6	0	16	0.97
12290910--12290969	3	20.3	3	75	21	56	61	1	3	33	1.22
12290917--12291007	10	9.7	9	73	17	62	58	4	3	34	1.34
12290911--12291007	23	3.9	23	78	17	81	58	4	3	34	1.32
12290917--12291007	15	6.4	14	75	15	73	58	4	3	34	1.34
12290911--12291008	38	2.5	38	85	9	119	58	5	3	33	1.36
12290914--12290996	5	16.6	5	75	15	66	59	4	2	33	1.32
12291285--12291444	55	2.9	55	80	0	185	40	14	21	23	1.90
12292236--12292266	16	1.9	16	93	0	53	0	16	3	80	0.83
12293447--12293491	22	2.0	22	82	4	54	26	8	22	42	1.83
12295795--12295900	51	2.1	51	85	5	144	32	11	16	40	1.83
12297049--12297111	24	2.7	24	87	2	92	71	4	0	23	1.05
12297495--12297541	20	2.4	20	82	10	53	44	27	4	23	1.72
12300030--12300113	14	5.7	14	76	18	66	59	2	3	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12300030--12300135	5	21.4	5	71	16	60	57	4	2	34	1.34
12304372--12304413	19	2.2	20	86	4	59	7	14	0	78	0.95
12307995--12308037	21	2.0	22	90	4	70	67	2	4	25	1.22
12308633--12308680	22	2.2	22	92	0	78	29	16	12	41	1.85
12309099--12309128	11	2.7	11	94	0	51	90	0	6	3	0.56
12309768--12309799	3	10.7	3	100	0	64	68	0	0	31	0.90
12317606--12317673	33	2.1	33	91	0	109	26	13	16	44	1.84
12317795--12317829	15	2.2	16	90	5	54	82	0	17	0	0.66
12324682--12324760	34	2.3	34	80	4	97	37	13	12	35	1.83
12325360--12325407	24	2.0	24	84	8	62	50	0	2	47	1.12
12326449--12326525	35	2.2	35	90	4	120	42	10	25	20	1.84
12326618--12326675	23	2.5	23	85	2	71	41	3	1	53	1.28
12326642--12326686	23	2.0	23	82	8	56	48	2	0	48	1.13
12327043--12327088	2	23.5	2	86	4	67	52	0	0	47	1.00
12331464--12331516	18	2.9	18	88	0	88	26	22	30	20	1.98
12333681--12333741	29	2.1	28	82	14	79	50	0	0	49	1.00
12333681--12333726	18	2.6	18	75	3	58	45	0	0	54	0.99
12335438--12335649	60	3.5	61	90	1	347	41	10	5	42	1.63
12335436--12335668	121	1.9	120	91	2	378	39	10	6	43	1.63
12335438--12335676	61	3.9	60	88	3	327	38	10	5	45	1.61
12337764--12337804	17	2.4	18	80	19	52	34	7	2	56	1.40
12339199--12339256	21	2.8	21	80	12	59	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12339956--12340040	29	2.9	29	75	10	75	44	1	2	51	1.21
12340684--12340709	13	2.0	13	100	0	52	23	0	0	76	0.78
12341388--12341421	12	2.9	12	91	4	52	5	2	5	85	0.83
12341476--12341590	15	8.5	13	80	16	96	77	2	1	18	0.97
12341476--12341602	6	20.0	6	80	16	123	77	2	3	16	0.99
12341476--12341585	46	2.4	45	86	7	168	76	2	1	19	1.00
12342767--12342793	14	1.9	14	100	0	54	44	7	0	48	1.31
12350846--12351051	73	2.8	73	85	0	297	31	18	23	25	1.98
12351138--12351179	20	2.1	20	86	0	57	35	33	7	23	1.82
12353615--12353789	76	2.3	76	83	4	219	40	18	18	22	1.92
12356301--12356353	18	2.9	18	88	0	88	26	22	30	20	1.98
12358514--12358564	18	2.9	18	76	2	59	43	0	1	54	1.11
12361622--12361651	6	5.0	6	95	0	51	33	30	16	20	1.94
12361957--12362004	23	2.1	23	84	7	62	56	0	0	43	0.99
12364229--12364310	12	6.4	13	76	19	66	74	3	0	21	0.97
12364204--12364310	32	3.5	30	78	10	103	72	3	1	21	1.09
12364226--12364305	41	2.0	40	87	7	117	75	3	0	21	0.96
12364226--12364303	5	14.6	5	72	24	54	74	3	0	21	0.98
12364202--12364311	6	18.0	6	70	17	57	72	3	1	21	1.09
12364623--12364669	21	2.3	21	88	3	69	55	8	0	36	1.31
12367380--12367424	22	2.1	21	83	4	54	33	0	0	66	0.92
12367579--12367640	25	2.6	24	85	10	74	62	3	6	27	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12367623--12367682	25	2.4	25	86	8	79	75	3	0	21	0.95
12367637--12367701	29	2.2	30	78	13	73	78	4	3	13	1.03
12367943--12367979	19	1.9	19	94	0	65	48	24	8	18	1.75
12370891--12370982	11	8.6	11	69	11	59	58	5	3	32	1.37
12370879--12370954	30	2.5	29	87	6	98	59	6	2	31	1.37
12370920--12370978	21	2.8	21	78	12	57	61	5	5	28	1.39
12370879--12370964	30	2.8	29	81	13	84	59	6	2	31	1.37
12371234--12371299	28	2.4	28	85	7	82	37	0	4	57	1.19
12371234--12371313	27	2.9	27	81	10	81	37	0	3	58	1.16
12371253--12371313	30	2.1	30	87	9	90	36	0	1	62	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129