genome.fa.s24.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  109  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18227639--18227663	5	5.0	5	100	0	50	80	0	0	20	0.72
18229656--18230227	285	2.0	285	93	0	982	24	24	15	35	1.94
18239594--18239646	18	2.8	18	74	5	52	56	1	0	41	1.10
18244666--18244708	18	2.4	19	80	11	54	48	0	2	48	1.14
18244689--18244744	24	2.5	22	82	8	69	58	0	1	39	1.08
18244691--18244744	22	2.4	21	81	9	63	59	0	1	38	1.08
18245320--18245364	22	2.0	23	82	8	56	44	13	2	40	1.56
18247597--18247644	24	2.0	24	100	0	96	8	41	25	25	1.83
18249152--18249790	210	3.0	211	84	5	820	35	10	10	43	1.73
18250256--18250282	4	6.8	4	100	0	54	48	0	0	51	1.00
18254872--18254899	2	14.0	2	100	0	56	50	0	0	50	1.00
18254926--18254955	15	1.9	16	93	6	53	33	0	0	66	0.92
18257885--18257986	49	2.2	46	82	8	125	50	10	9	28	1.69
18257899--18257995	49	2.0	50	89	2	151	48	9	12	29	1.72
18258375--18258486	19	5.8	18	67	16	55	48	4	6	41	1.48
18260720--18261561	222	3.7	219	80	11	845	37	9	10	43	1.72
18260808--18261433	235	2.7	223	82	11	741	38	8	8	43	1.67
18262718--18262746	14	2.1	14	100	0	58	13	0	0	86	0.58
18263806--18263852	3	16.0	3	80	4	51	59	2	4	34	1.29
18266472--18266522	25	2.0	25	100	0	102	62	7	13	15	1.52
18269398--18269433	8	4.6	8	89	3	56	86	0	0	13	0.58
18269395--18269436	15	2.8	15	86	10	59	83	0	0	16	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18270305--18270434	61	2.2	59	80	9	138	60	6	10	23	1.52
18274005--18274047	17	2.5	17	85	7	61	79	2	18	0	0.85
18274009--18274047	18	2.2	18	90	9	62	79	2	17	0	0.84
18274414--18274452	11	3.5	11	89	6	53	79	0	17	2	0.84
18274428--18274468	17	2.3	18	87	8	57	80	0	17	2	0.82
18274411--18274468	10	5.9	10	75	15	50	77	0	17	5	0.94
18275130--18275251	62	2.0	62	86	1	172	36	8	22	31	1.84
18275545--18275596	20	2.6	20	90	0	77	34	13	15	36	1.87
18275709--18276039	21	14.9	21	78	10	205	40	11	13	34	1.81
18275705--18276016	46	6.9	47	79	10	246	40	11	13	34	1.81
18276030--18276243	75	2.9	75	83	0	266	36	14	13	35	1.86
18276945--18276977	9	3.6	9	92	8	57	78	0	0	21	0.75
18276940--18276976	10	3.7	10	89	10	58	81	0	0	18	0.70
18276940--18276977	19	2.0	20	94	5	69	78	0	0	21	0.74
18278097--18278126	13	2.3	13	100	0	60	73	13	0	13	1.10
18278042--18278189	68	2.2	67	78	7	158	61	7	8	22	1.49
18284766--18284817	26	2.1	26	89	7	81	51	17	13	17	1.76
18285530--18285587	31	1.9	30	86	10	82	36	3	3	56	1.33
18287579--18287608	2	15.0	2	92	0	51	46	0	0	53	1.00
18289086--18289123	13	3.0	13	80	3	51	42	0	2	55	1.14
18289242--18289271	12	2.4	13	94	5	53	56	0	0	43	0.99
18295947--18296030	39	2.1	40	78	12	93	38	11	17	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18298573--18298777	108	1.9	105	88	4	304	41	11	10	36	1.76
18299203--18299236	16	2.1	16	100	0	68	20	50	0	29	1.49
18299933--18299981	3	16.7	3	95	4	91	30	0	0	69	0.89
18302227--18302277	22	2.3	22	96	0	93	33	17	13	35	1.89
18304911--18305226	127	2.5	127	75	7	300	36	8	10	44	1.69
18305306--18305371	27	2.4	28	82	7	82	54	0	6	39	1.25
18308085--18308119	3	11.7	3	100	0	70	34	0	0	65	0.93
18308155--18308208	23	2.4	22	76	11	56	68	1	3	25	1.16
18313230--18313260	15	2.1	15	93	0	53	35	19	9	35	1.85
18313288--18313313	13	2.0	13	100	0	52	84	0	0	15	0.62
18313978--18314068	22	4.1	22	68	8	58	36	25	14	24	1.93
18314130--18314189	23	2.6	23	86	0	75	28	20	18	33	1.96
18314387--18314637	126	2.0	126	81	3	299	36	14	13	34	1.86
18315152--18315351	99	2.0	99	86	3	278	36	40	9	14	1.77
18325894--18325943	17	2.9	17	78	3	55	44	14	8	34	1.74
18326145--18326505	130	2.8	128	78	4	375	22	19	11	46	1.81
18326167--18326885	65	11.2	65	70	12	313	22	18	11	47	1.81
18326714--18326885	66	2.6	66	78	4	161	22	18	11	48	1.79
18328736--18328765	7	4.3	7	100	0	60	40	0	0	60	0.97
18332879--18332940	3	20.7	3	100	0	124	33	32	0	33	1.58
18334569--18334611	17	2.4	18	81	14	54	81	2	16	0	0.79
18334569--18334611	18	2.5	17	85	11	52	81	2	16	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18335553--18335597	15	3.1	15	90	6	74	42	37	0	20	1.52
18335553--18335596	14	3.1	14	93	3	70	43	36	0	20	1.52
18335698--18335747	22	2.4	21	83	12	59	50	34	0	16	1.45
18347070--18347121	11	4.8	11	78	17	56	73	1	1	23	1.04
18347070--18347140	21	3.4	20	75	14	72	76	2	1	19	0.99
18348222--18348783	109	5.2	110	81	6	610	21	21	13	43	1.86
18348472--18348924	35	12.5	35	65	15	118	20	22	14	43	1.87
18348231--18348829	71	8.3	70	68	12	237	21	21	13	43	1.86
18348185--18348744	110	5.1	108	82	5	619	20	22	13	43	1.86
18348470--18349043	289	2.0	291	85	2	771	20	21	14	43	1.87
18348855--18349064	110	1.9	110	87	1	305	19	22	13	44	1.86
18348867--18349127	110	2.4	110	80	7	287	18	21	14	44	1.86
18349238--18349382	72	2.0	73	81	8	170	16	19	13	50	1.78
18350733--18350779	18	2.7	17	78	15	51	23	0	4	72	1.02
18351150--18351190	15	2.7	16	88	7	59	48	31	0	19	1.49
18351148--18351199	15	3.6	14	76	7	50	44	30	0	25	1.54
18351165--18351241	28	2.8	28	71	16	70	49	25	0	24	1.51
18351277--18351339	30	2.1	31	87	3	92	46	34	1	17	1.58
18358067--18358094	2	14.0	2	100	0	56	50	0	0	50	1.00
18362934--18363013	30	2.8	29	79	9	101	50	1	0	48	1.08
18362965--18363008	22	2.0	22	90	4	70	50	0	0	50	1.00
18363050--18363087	19	2.0	19	85	10	51	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18363251--18363277	13	2.1	13	100	0	54	40	0	0	59	0.98
18379768--18379799	16	1.9	17	93	6	57	43	3	0	53	1.16
18381226--18381289	29	2.2	29	86	8	85	57	17	7	17	1.62
18387879--18388013	5	25.6	5	68	23	57	73	2	4	19	1.14
18387879--18388013	9	14.9	9	67	20	68	73	2	4	19	1.14
18387879--18388013	16	8.5	15	67	22	57	73	2	4	19	1.14
18387888--18388014	17	7.2	17	67	23	50	73	3	4	18	1.15
18387903--18388015	25	4.3	25	71	10	75	74	2	5	17	1.12
18389545--18389573	14	2.0	15	93	6	51	41	0	0	58	0.98
18393516--18393540	2	12.5	2	100	0	50	48	0	0	52	1.00
18396875--18397009	66	2.0	66	91	0	216	39	12	20	28	1.89
18399784--18399825	7	6.0	7	79	20	52	83	2	0	14	0.75
18399777--18399823	15	3.3	14	82	11	60	85	4	0	10	0.74
18399777--18399825	22	2.2	22	89	7	73	83	4	0	12	0.77
18399858--18399899	9	4.8	9	83	16	52	83	4	0	11	0.79
18399858--18399903	17	2.8	17	87	9	60	82	6	0	10	0.83
18401393--18401420	2	14.0	2	100	0	56	50	0	50	0	1.00
18407841--18407907	18	3.8	18	71	15	59	59	0	0	40	0.97
18407842--18407881	16	2.4	16	83	4	53	60	0	0	40	0.97
18407843--18407913	28	2.4	29	81	11	83	60	0	0	39	0.97
18411057--18411105	19	2.6	19	93	0	80	46	14	6	32	1.69
18412695--18412742	3	16.0	3	100	0	96	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18413073--18413099	6	4.5	6	100	0	54	85	0	0	14	0.61
18414162--18414196	16	2.2	16	89	0	52	22	5	40	31	1.78
18414999--18415048	5	9.8	5	79	12	57	76	2	4	18	1.04
18415760--18415827	22	3.1	22	80	0	91	36	10	19	33	1.85
18415990--18416076	40	2.2	40	81	8	97	40	14	11	33	1.83
18418015--18418076	23	2.6	24	84	7	81	1	20	1	75	0.97
18418020--18418092	20	3.9	18	78	16	69	1	19	2	76	0.98
18418016--18418094	13	5.8	13	69	10	59	1	17	2	78	0.93
18418148--18418192	3	15.0	3	100	0	90	33	0	0	66	0.92
18418477--18418502	6	4.3	6	100	0	52	84	0	0	15	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129