genome.fa.s24.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  115  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19298983--19299033	22	2.3	21	80	12	57	33	1	5	58	1.33
19298986--19299050	18	3.6	17	76	12	60	36	3	4	55	1.36
19299234--19299267	14	2.2	16	90	10	54	47	5	5	41	1.52
19301506--19301546	17	2.4	17	88	8	57	68	4	0	26	1.10
19301509--19301562	26	2.0	27	85	3	74	64	5	1	27	1.26
19301536--19301585	19	2.9	17	78	21	59	56	2	4	38	1.30
19303330--19303356	5	5.4	5	100	0	54	18	0	0	81	0.69
19309646--19309699	23	2.3	23	87	0	72	31	1	7	59	1.36
19310308--19310445	69	2.0	69	94	0	240	42	20	8	28	1.82
19315924--19315983	14	4.1	14	71	16	50	70	3	1	25	1.12
19318924--19319416	145	3.4	145	79	7	466	41	12	11	33	1.79
19320223--19320282	31	2.0	30	86	3	84	13	3	3	80	0.97
19320230--19320265	17	2.2	17	90	5	56	8	5	5	80	1.01
19322526--19322582	30	1.9	30	85	7	71	59	0	1	38	1.08
19322526--19322587	20	3.2	19	79	6	79	59	0	1	38	1.07
19322738--19322783	18	2.4	18	85	7	56	63	2	2	32	1.19
19324980--19325523	102	5.3	102	97	0	980	31	14	22	30	1.94
19326874--19326918	15	2.8	16	83	6	56	75	0	0	24	0.80
19327542--19327579	19	2.0	20	90	10	62	63	0	0	36	0.95
19327971--19328055	42	2.0	43	86	6	120	34	14	27	24	1.94
19330458--19330507	25	2.1	24	85	7	66	64	6	0	30	1.18
19333384--19333740	60	6.0	59	78	8	325	46	5	11	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19333388--19333746	120	3.0	118	81	7	395	46	5	11	36	1.63
19337881--19337951	12	6.4	11	77	16	58	83	0	9	7	0.82
19337881--19337936	22	2.5	22	85	11	78	83	0	10	5	0.78
19337890--19337971	10	8.2	10	71	14	62	81	0	12	6	0.85
19337905--19337943	17	2.3	17	86	0	51	82	0	10	7	0.86
19337904--19337955	18	2.9	18	82	2	70	82	0	7	9	0.84
19338766--19338809	23	1.9	23	86	9	63	43	4	25	27	1.74
19339122--19339224	21	5.0	21	77	7	102	43	10	9	35	1.72
19339169--19339394	79	2.9	79	87	0	326	39	11	15	33	1.83
19339265--19339304	21	1.9	21	100	0	80	35	10	20	35	1.86
19339432--19339494	30	2.1	31	85	5	85	33	11	15	39	1.83
19339738--19340008	41	6.5	41	83	4	319	25	12	19	42	1.86
19339742--19339968	84	2.7	83	90	2	337	25	12	18	43	1.85
19339738--19340008	84	3.3	83	85	4	334	25	12	19	42	1.86
19343425--19343455	16	1.9	16	93	0	53	16	0	3	80	0.83
19344630--19344687	30	1.9	31	89	3	91	43	3	10	43	1.55
19345941--19345997	30	1.9	30	92	0	96	43	3	10	42	1.56
19346167--19346236	37	1.9	37	88	8	108	60	0	1	38	1.06
19347763--19347849	30	2.9	30	98	0	165	42	3	11	42	1.58
19348023--19348093	37	1.9	37	88	8	110	59	0	1	39	1.06
19349129--19349185	30	1.9	30	96	0	105	42	3	12	42	1.59
19349355--19349424	37	1.9	36	88	8	106	60	1	1	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19349992--19350050	24	2.5	24	74	0	64	10	16	6	66	1.43
19350470--19350526	30	1.9	30	96	0	105	42	3	12	42	1.59
19351960--19352016	29	2.0	27	93	6	87	57	0	3	38	1.16
19351947--19352017	29	2.8	25	78	17	74	57	0	4	38	1.18
19352181--19352232	16	3.3	16	74	12	54	76	0	1	21	0.87
19352209--19352249	16	2.5	17	84	7	50	63	4	2	29	1.28
19352373--19352437	23	2.7	23	78	4	76	58	0	1	40	1.07
19352666--19352788	50	2.5	50	80	7	135	56	1	4	37	1.28
19353139--19353196	10	5.9	10	95	2	100	25	0	0	74	0.82
19364465--19364504	21	2.0	21	90	5	64	25	0	5	70	1.08
19365672--19365718	21	2.3	19	82	13	58	2	4	8	85	0.81
19365672--19365770	7	13.4	7	74	19	51	11	2	7	79	1.00
19365671--19365766	14	6.5	14	81	9	68	11	2	6	80	0.98
19365693--19365768	7	9.9	8	78	17	63	13	0	7	78	0.94
19365713--19365766	16	3.3	16	89	5	81	18	0	3	77	0.91
19365713--19365766	17	3.2	17	92	2	83	18	0	3	77	0.91
19365722--19365785	17	3.7	18	82	13	64	20	0	4	75	0.99
19365775--19365821	12	3.9	12	75	10	51	29	0	2	68	1.02
19368259--19368422	61	2.7	59	84	3	195	34	7	5	52	1.52
19368567--19368621	16	3.3	18	82	10	64	78	5	0	16	0.93
19368568--19368614	12	3.5	13	85	14	60	76	4	0	19	0.95
19368981--19369033	22	2.4	22	81	9	63	56	16	0	26	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19368977--19369036	22	2.8	20	78	12	57	56	16	0	26	1.40
19369062--19369103	21	2.0	20	86	4	57	2	11	9	76	1.12
19369423--19369451	6	5.0	6	95	4	51	0	0	13	86	0.58
19369468--19369735	84	3.2	85	83	6	298	44	17	12	26	1.84
19369495--19369838	42	8.2	42	81	6	324	45	17	11	25	1.82
19369498--19369850	125	2.8	126	81	6	376	45	17	11	25	1.81
19370274--19370332	21	2.7	22	86	2	84	37	16	10	35	1.83
19374353--19374429	23	3.1	23	71	16	64	49	5	19	25	1.69
19374364--19374426	28	2.2	28	86	5	92	50	4	19	25	1.66
19376934--19376976	20	2.2	19	83	4	50	69	0	2	27	1.00
19377419--19377489	37	1.9	37	88	8	110	59	0	1	39	1.06
19380133--19380172	21	1.9	21	89	0	62	37	2	12	47	1.55
19380140--19380182	21	2.0	21	86	8	61	37	4	9	48	1.56
19380968--19382851	314	6.0	314	94	0	3212	35	14	18	31	1.92
19380968--19382851	629	3.0	629	96	0	3385	35	14	18	31	1.92
19381135--19382854	943	1.8	937	95	0	2659	35	15	19	30	1.93
19383621--19383661	6	6.7	6	97	2	73	0	14	34	51	1.43
19385627--19385668	22	1.9	22	90	9	68	30	9	30	28	1.89
19385627--19385682	22	2.6	23	83	13	66	30	12	30	26	1.93
19385754--19385788	16	2.1	17	89	5	54	34	5	8	51	1.56
19386321--19386593	96	2.8	95	79	4	291	31	12	20	34	1.91
19388853--19388881	13	2.1	14	93	6	51	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19397726--19397775	18	2.9	18	85	11	61	84	2	4	10	0.84
19398269--19398302	18	1.9	18	94	5	61	73	0	26	0	0.83
19398652--19398698	24	1.9	24	82	4	58	42	4	6	46	1.48
19407487--19407529	10	4.3	10	79	8	52	86	0	6	6	0.72
19407486--19407530	19	2.4	19	92	3	74	82	0	6	11	0.84
19408532--19408814	43	6.5	43	76	6	196	26	13	15	44	1.83
19408532--19408814	87	3.3	85	76	7	257	26	13	15	44	1.83
19408531--19408814	130	2.2	130	79	5	322	26	13	15	44	1.83
19409817--19409846	14	2.2	13	94	5	51	20	0	0	80	0.72
19409860--19409894	18	1.9	18	88	11	54	77	0	0	22	0.78
19415763--19415845	29	2.8	30	76	10	82	45	1	2	50	1.22
19420561--19420590	16	1.9	16	93	6	53	73	3	6	16	1.18
19421838--19421890	1	53.0	1	88	0	52	88	3	0	7	0.61
19421825--19421890	14	4.7	14	89	10	84	86	4	0	9	0.70
19421819--19421882	17	3.9	17	86	12	98	81	6	0	12	0.87
19421825--19421890	31	2.1	31	91	0	105	86	4	0	9	0.70
19422213--19422258	20	2.3	20	84	0	56	17	21	28	32	1.96
19422203--19422320	62	1.9	63	84	5	159	16	20	29	33	1.95
19422275--19422318	20	2.2	20	92	8	72	4	22	31	40	1.74
19422896--19422921	3	8.7	3	100	0	52	69	0	0	30	0.89
19424878--19424929	21	2.5	20	71	14	52	76	1	11	9	1.09
19425579--19425608	15	2.1	15	93	6	53	46	3	6	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19426942--19426989	19	2.4	20	86	13	64	64	6	12	16	1.46
19429535--19429561	10	2.7	10	100	0	54	66	0	0	33	0.92
19431066--19431137	22	3.3	22	67	7	65	36	15	12	36	1.85
19431129--19431204	22	3.5	22	82	7	75	35	17	11	35	1.86
19431175--19431294	22	5.5	23	67	14	67	33	12	14	40	1.83
19431175--19431294	43	2.8	43	76	11	120	33	12	14	40	1.83
19431991--19432158	44	3.8	44	78	7	171	24	8	16	50	1.72
19432833--19432875	11	3.8	11	78	6	50	16	4	9	69	1.31
19432827--19432876	23	2.2	23	100	0	100	18	4	12	66	1.39
19432827--19432864	12	3.2	12	77	7	51	15	2	13	68	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129