genome.fa.s24.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  6  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029134--1035695	902	7.4	893	85	4	8123	25	24	24	25	2.00
1037166--1038644	712	2.1	714	87	4	2097	26	23	23	26	2.00
1038587--1038939	159	2.2	158	81	3	386	21	26	28	23	1.99
1038914--1038965	26	2.0	25	92	3	86	28	26	17	26	1.97
1039728--1039777	26	1.9	26	95	0	91	22	28	20	30	1.98
1043159--1043212	27	2.0	26	89	3	81	27	25	18	27	1.98
1039786--1063785	902	26.4	897	74	10	16657	25	24	24	25	2.00
1044065--1044117	26	2.0	26	96	0	97	26	26	18	28	1.98
1044972--1045024	26	2.0	26	92	0	88	28	24	18	28	1.98
1045874--1045926	26	2.0	26	100	0	106	26	26	20	26	1.99
1046776--1046828	26	2.0	26	100	0	106	26	26	20	26	1.99
1047674--1047726	26	2.0	26	92	0	88	28	24	18	28	1.98
1048487--1048536	26	1.9	26	91	0	82	24	26	20	30	1.98
1049367--1049416	26	1.9	26	95	0	91	24	28	20	28	1.99
1050440--1050492	26	2.0	26	92	0	88	26	26	18	28	1.98
1052617--1052669	26	2.0	26	96	0	97	28	26	18	26	1.98
1053501--1053553	26	2.0	26	92	0	88	28	22	20	28	1.99
1055120--1055172	26	2.0	26	96	0	97	24	26	20	28	1.99
1055769--1055882	57	2.0	57	89	0	174	14	40	21	23	1.90
1056080--1056132	26	2.0	26	88	0	79	30	24	20	24	1.99
1057880--1057930	26	2.0	26	92	0	84	27	25	15	31	1.96
1058770--1058822	26	2.0	26	100	0	106	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1060383--1060408	12	2.2	12	100	0	52	0	53	26	19	1.45
1060586--1060638	26	2.0	26	96	0	97	24	26	20	28	1.99
1061488--1061540	26	2.0	26	100	0	106	26	26	20	26	1.99
1062188--1062213	12	2.2	12	100	0	52	0	53	26	19	1.45
1063261--1063313	26	2.0	26	100	0	106	26	26	20	26	1.99
1064040--1064091	26	2.0	26	96	0	95	28	26	17	26	1.97
1064922--1064974	26	2.0	26	92	0	88	30	26	16	26	1.97
1067566--1067618	26	2.0	26	96	0	97	26	24	22	26	2.00
1064066--1080619	892	18.5	875	78	9	14857	25	24	23	25	2.00
1069335--1069387	26	2.0	26	92	0	88	24	24	20	30	1.99
1070203--1070255	26	2.0	26	96	0	97	28	26	18	26	1.98
1071984--1072036	26	2.0	26	100	0	106	26	26	20	26	1.99
1075714--1075771	26	2.2	26	96	0	107	31	24	22	22	1.99
1077503--1077555	26	2.0	26	92	0	88	26	22	20	30	1.98
1079263--1079314	26	2.0	26	96	0	95	32	21	19	26	1.97
1080146--1080195	26	1.9	26	91	0	82	26	26	18	30	1.98
1081817--1081869	26	2.0	26	92	0	88	28	24	20	26	1.99
1080643--1083341	903	3.0	886	87	4	3661	25	25	24	24	2.00
1084307--1084359	26	2.0	26	89	7	81	28	24	20	26	1.99
1083430--1089520	872	6.9	870	82	6	6970	26	24	23	25	2.00
1086951--1087003	26	2.0	26	96	0	97	28	26	18	26	1.98
1087751--1087782	15	2.1	15	94	0	55	18	25	50	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087852--1087904	26	2.0	26	96	0	97	26	24	20	28	1.99
1086078--1089428	887	3.7	890	84	5	4332	26	24	23	25	2.00
1089794--1089845	25	2.0	26	88	3	79	34	25	13	26	1.93
1090677--1090729	26	2.0	26	92	0	88	28	28	16	26	1.97
1089577--1092337	895	3.1	894	86	4	3794	25	24	24	25	2.00
1092885--1092936	26	2.0	26	96	0	95	26	25	19	28	1.98
1093777--1093825	25	2.0	25	95	0	89	30	24	20	24	1.98
1094638--1094690	26	2.0	26	92	0	88	30	24	18	26	1.98
1096422--1096474	26	2.0	26	96	0	97	28	26	18	26	1.98
1094189--1099499	903	6.0	898	83	6	6365	26	24	23	25	2.00
1099237--1099808	309	1.9	309	93	0	982	25	23	22	28	1.99
1100245--1100298	26	2.1	26	89	0	81	27	16	22	33	1.95
1101158--1101208	26	2.0	26	96	0	93	27	27	15	29	1.96
1099510--1103336	873	4.3	895	85	4	4800	25	24	24	25	2.00
1102921--1102970	26	1.9	26	91	0	82	24	26	22	28	1.99
1107500--1107552	26	2.0	26	92	0	88	26	22	20	30	1.98
1108395--1108447	26	2.0	26	92	0	88	30	22	20	26	1.98
1106623--1130428	902	26.6	893	81	7	24923	25	24	24	25	2.00
1110148--1110201	26	2.1	26	100	0	108	24	25	22	27	2.00
1111047--1111097	26	2.0	26	92	0	84	29	27	17	25	1.98
1112842--1112893	26	2.0	25	88	3	77	28	25	17	28	1.97
1109286--1130428	901	23.6	898	81	7	22322	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115473--1115522	25	2.0	25	92	0	82	32	24	16	28	1.96
1116824--1116880	26	2.2	26	83	0	69	59	12	7	21	1.56
1117246--1117298	26	2.0	26	96	0	97	24	26	22	26	2.00
1118144--1118196	26	2.0	26	96	0	97	28	26	18	26	1.98
1113744--1130428	900	18.6	894	79	8	15382	25	24	24	25	2.00
1119941--1119993	26	2.0	26	92	0	88	26	24	18	30	1.98
1120845--1120895	26	2.0	26	96	0	93	25	25	23	25	2.00
1122068--1122097	12	2.5	12	100	0	60	16	30	13	40	1.87
1122102--1122129	7	4.0	7	100	0	56	28	28	28	14	1.95
1122644--1122694	26	2.0	26	92	0	84	29	23	19	27	1.98
1123536--1123588	26	2.0	26	96	0	97	28	26	18	26	1.98
1124422--1124474	26	2.0	26	96	0	97	26	24	20	28	1.99
1127182--1127232	26	2.0	26	96	0	93	27	27	17	27	1.98
1128083--1128133	26	2.0	26	92	0	84	31	27	13	27	1.94
1122149--1130428	879	9.2	901	81	6	8901	26	24	23	25	2.00
1131320--1131372	26	2.0	26	92	0	88	26	28	18	26	1.98
1132880--1132931	26	2.0	26	96	0	95	36	23	13	26	1.92
1132906--1134372	703	2.1	710	88	2	2144	27	23	22	26	2.00
1134485--1134537	26	2.0	26	88	0	79	28	24	16	30	1.97
1133619--1138818	903	5.8	904	86	3	6709	26	24	23	25	2.00
1138183--1139464	710	1.8	711	91	1	2151	28	24	22	24	2.00
1139653--1139705	26	2.0	26	92	7	90	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140555--1140607	26	2.0	26	96	0	97	26	28	20	24	1.99
1138776--1141011	902	2.5	899	89	2	3304	25	24	24	25	2.00
1142043--1142093	26	2.0	26	100	0	102	27	23	21	27	1.99
1142842--1142893	26	2.0	26	92	7	88	26	23	19	30	1.98
1143745--1143797	26	2.0	26	96	0	97	28	26	18	26	1.98
1142392--1144672	903	2.5	901	88	1	3326	25	25	24	24	2.00
1144682--1145023	188	1.8	187	85	4	483	18	23	35	22	1.96
1147840--1147892	26	2.0	26	96	0	97	28	26	18	26	1.98
1148615--1148957	179	1.9	179	87	0	497	20	25	30	23	1.98
1148944--1153656	895	5.3	871	86	4	5587	25	25	24	24	2.00
1150780--1150826	24	2.0	24	100	0	94	12	36	12	38	1.82
1151597--1151649	26	2.0	26	88	0	79	28	20	20	30	1.98
1152492--1152544	26	2.0	26	92	0	88	28	24	18	28	1.98
1153385--1153435	26	2.0	26	100	0	102	27	29	15	27	1.96
1155705--1155757	26	2.0	26	100	0	106	26	26	20	26	1.99
1157517--1158972	718	2.0	719	90	1	2319	26	24	23	25	2.00
1159108--1159158	26	2.0	26	96	0	93	27	23	21	27	1.99
1159986--1160038	26	2.0	26	88	0	79	30	24	16	28	1.97
1158260--1166964	897	9.8	894	84	4	10312	25	24	23	25	2.00
1164426--1164478	26	2.0	26	92	0	88	28	28	15	28	1.96
1165333--1165384	26	2.0	25	96	3	95	28	26	17	26	1.97
1168646--1168698	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169534--1169585	26	2.0	26	92	0	86	30	21	19	28	1.97
1170437--1170489	26	2.0	26	88	0	79	30	20	16	32	1.95
1168281--1171337	902	3.4	897	86	3	4120	25	25	24	25	2.00
1172135--1172187	26	2.0	26	92	0	88	28	24	18	28	1.98
1173033--1173116	26	3.2	26	96	1	150	27	25	20	27	1.99
1173976--1174028	26	2.0	26	92	0	88	24	28	22	24	2.00
1177789--1177838	26	1.9	26	95	0	91	24	28	20	28	1.99
1176033--1178714	889	3.0	883	84	4	3469	25	24	24	25	2.00
1178505--1178900	157	2.5	158	83	3	458	20	28	28	22	1.99
1179707--1179760	27	2.0	27	96	3	101	27	29	16	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129