genome.fa.s24.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  71  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11177607--11177656	23	2.2	23	88	0	73	32	24	20	24	1.98
11177388--11177876	241	2.0	243	82	3	592	37	17	21	24	1.94
11177618--11177876	111	2.3	110	83	5	326	37	17	20	24	1.94
11178457--11178801	33	10.5	33	79	6	294	34	14	20	31	1.92
11179624--11179673	24	2.0	26	88	11	77	2	20	2	76	0.99
11179627--11179688	29	2.1	29	84	3	79	3	20	3	72	1.13
11186022--11186068	25	1.9	24	82	4	58	31	2	2	63	1.18
11187816--11187849	14	2.4	14	90	0	50	2	23	0	73	0.97
11187853--11187905	26	2.0	26	82	7	63	52	0	0	47	1.00
11187855--11187892	20	1.9	19	85	15	51	50	0	0	50	1.00
11189710--11189744	5	7.0	5	90	9	54	57	0	0	42	0.99
11190414--11190440	14	1.9	14	100	0	54	48	0	0	51	1.00
11190403--11190462	17	3.6	16	76	14	59	43	0	0	56	0.99
11190431--11190489	24	2.6	22	77	17	68	45	0	0	54	0.99
11191291--11191329	20	1.9	21	84	5	53	35	5	5	53	1.45
11192249--11192319	36	2.0	36	82	0	88	29	11	9	49	1.71
11194119--11194189	32	2.2	32	85	5	90	56	8	12	22	1.63
11200266--11200317	17	3.1	17	80	5	61	59	11	5	23	1.53
11205206--11205254	19	2.5	20	86	3	64	46	10	2	40	1.49
11211318--11211362	21	2.1	21	84	8	56	28	8	8	53	1.62
11215113--11215143	15	2.1	15	100	0	62	35	19	6	38	1.77
11216543--11216567	13	1.9	13	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11216210--11216874	333	2.0	326	88	6	982	29	8	7	54	1.59
11217261--11217317	27	2.1	27	83	6	71	43	0	1	54	1.10
11217260--11217320	28	2.2	28	80	11	72	44	0	1	54	1.10
11217833--11217869	15	2.4	16	86	13	51	2	8	8	81	0.97
11218308--11218350	13	2.9	14	80	19	52	13	4	0	81	0.84
11218308--11218350	7	5.9	7	82	15	52	13	4	0	81	0.84
11218309--11218364	15	3.7	15	77	15	53	16	5	1	76	1.05
11219114--11219139	1	26.0	1	100	0	52	100	0	0	0	0.00
11229331--11229396	4	15.8	4	81	9	69	18	1	9	71	1.20
11232078--11232138	20	3.0	20	79	13	61	22	3	29	44	1.69
11242861--11242910	4	11.8	4	83	12	64	74	4	0	22	0.99
11244758--11245069	40	7.8	40	75	11	221	40	12	11	36	1.79
11244769--11245081	79	3.9	80	80	10	275	39	12	12	36	1.80
11248685--11248964	147	1.9	147	94	1	490	39	6	9	44	1.63
11249154--11249284	8	16.6	8	70	9	63	44	25	6	23	1.78
11249139--11249253	40	2.9	41	78	10	130	44	25	6	24	1.76
11249217--11249308	16	5.9	16	76	5	71	44	27	6	21	1.77
11249296--11249351	19	2.8	20	67	5	51	44	26	14	14	1.83
11255119--11255169	17	3.1	17	82	2	59	80	0	13	5	0.89
11255676--11255881	104	2.0	104	94	0	358	30	12	15	42	1.83
11256686--11256726	20	2.0	21	86	13	59	12	19	4	63	1.46
11258039--11258069	15	2.1	15	100	0	62	25	12	12	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11260158--11260209	27	1.9	27	84	7	70	80	1	7	9	0.97
11261311--11261469	70	2.3	70	80	6	187	19	22	10	47	1.79
11261340--11261575	35	6.8	35	70	10	126	17	19	12	50	1.77
11261349--11261575	105	2.2	104	79	5	244	17	18	12	51	1.76
11264682--11264733	15	3.7	14	80	10	52	40	1	3	53	1.30
11264707--11264740	3	11.3	3	93	0	59	32	2	0	64	1.08
11264739--11264764	3	8.7	3	100	0	52	0	0	30	69	0.89
11265073--11265110	20	1.9	20	88	0	58	15	0	36	47	1.46
11265703--11265754	22	2.4	22	80	3	61	61	7	3	26	1.41
11269637--11269724	15	5.7	15	74	19	67	81	4	10	3	0.94
11269635--11269719	21	4.2	19	71	17	64	83	4	8	3	0.89
11269674--11269698	13	1.9	13	100	0	50	88	4	0	8	0.64
11270432--11270678	121	2.0	121	82	4	293	20	23	13	42	1.87
11271072--11271120	18	2.7	18	90	0	71	28	18	14	38	1.90
11271951--11271993	3	14.3	3	100	0	86	32	0	0	67	0.91
11272264--11272293	15	1.9	16	93	6	53	23	0	26	50	1.50
11272737--11272808	27	2.9	24	80	11	90	20	5	1	72	1.13
11272912--11272952	22	1.9	21	85	5	55	65	7	2	24	1.30
11274075--11274105	13	2.4	13	94	0	53	70	16	0	12	1.16
11274902--11274935	11	3.1	11	86	0	50	38	0	0	61	0.96
11274892--11274935	22	2.0	22	86	0	61	43	0	0	56	0.99
11274932--11274998	15	4.5	15	73	12	57	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11274967--11275018	22	2.5	22	93	6	90	50	0	0	50	1.00
11275976--11276071	33	2.8	35	83	10	103	51	4	5	39	1.44
11276443--11276496	29	1.9	28	85	7	74	29	5	3	61	1.36
11288979--11289099	35	3.2	36	73	14	109	26	13	19	41	1.88
11289208--11289504	41	7.6	42	65	18	120	31	13	15	39	1.87
11289210--11289306	42	2.3	42	82	8	110	28	15	17	38	1.90
11289225--11289500	75	3.6	75	77	7	225	30	14	15	40	1.87
11290317--11290358	21	1.9	21	85	9	57	33	0	11	54	1.37
11290716--11290774	28	2.2	26	85	11	75	10	3	6	79	1.03
11290780--11290814	3	12.0	3	87	6	54	28	0	2	68	1.04
11291333--11291371	3	13.0	3	100	0	78	66	0	0	33	0.92
11293389--11293866	132	3.6	130	78	6	396	37	9	9	43	1.70
11293387--11293866	263	1.8	262	79	5	558	37	9	9	43	1.70
11293376--11294007	131	4.8	129	77	8	386	37	8	9	44	1.68
11297804--11297842	16	2.4	17	86	8	62	41	15	15	28	1.87
11298850--11298964	9	12.1	9	69	18	56	69	2	2	25	1.14
11298853--11298972	29	4.3	27	72	14	75	69	2	2	25	1.14
11298852--11298967	37	3.4	33	76	11	108	70	2	2	24	1.12
11298887--11298981	37	2.6	36	80	11	106	69	1	1	28	1.02
11298723--11299440	359	2.0	358	89	2	1115	51	11	11	26	1.71
11301085--11301111	7	3.9	7	100	0	54	29	14	11	44	1.80
11301498--11301538	19	2.1	20	86	4	57	14	0	63	21	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11307744--11307785	3	13.7	3	80	14	50	64	0	7	28	1.20
11308074--11308130	19	2.9	19	81	2	60	40	29	14	15	1.87
11308111--11308142	13	2.5	13	94	0	55	43	21	15	18	1.87
11308129--11308177	19	2.6	19	86	0	71	38	18	16	26	1.91
11308334--11308368	17	2.0	18	88	5	54	77	0	0	22	0.78
11308334--11308372	18	2.2	18	86	9	53	76	0	0	23	0.78
11312775--11312809	17	2.1	17	89	10	54	34	0	22	42	1.54
11321566--11321599	16	2.1	16	88	0	50	20	8	5	64	1.43
11325044--11325098	23	2.4	23	90	0	83	76	0	20	3	0.94
11326873--11326933	30	2.0	30	93	0	104	37	6	6	49	1.55
11328556--11328615	30	2.0	31	83	3	77	38	6	8	46	1.60
11334538--11334611	31	2.4	30	76	10	78	37	6	4	51	1.47
11336992--11337059	27	2.4	29	80	11	79	47	0	0	52	1.00
11336995--11337060	21	3.1	21	79	12	64	45	0	0	54	0.99
11339640--11339677	20	1.9	20	84	10	51	34	2	7	55	1.43
11340202--11340240	20	2.0	20	100	0	78	61	12	0	25	1.31
11342672--11342733	19	2.9	21	80	17	65	35	1	4	58	1.29
11343319--11343397	25	3.6	21	77	13	61	59	0	3	36	1.16
11345390--11345428	8	5.0	8	81	6	53	64	0	0	35	0.94
11345907--11345931	13	1.9	13	100	0	50	28	0	0	72	0.86
11346011--11346049	15	2.7	15	80	4	53	38	10	0	51	1.36
11346593--11346645	27	2.0	27	92	0	88	62	0	3	33	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11347689--11347934	63	3.9	62	74	8	189	39	5	7	47	1.54
11350908--11350939	16	2.1	16	94	5	57	71	0	0	28	0.86
11352601--11352626	11	2.4	11	100	0	52	30	30	23	15	1.95
11353831--11353864	10	3.4	10	91	0	50	11	2	8	76	1.12
11354401--11354436	2	18.0	2	88	0	54	50	0	2	47	1.15
11354398--11354441	10	4.3	10	85	2	52	52	0	4	43	1.22
11357091--11357456	132	2.8	131	80	5	418	52	8	19	19	1.71
11358226--11358257	16	2.0	16	100	0	64	31	43	6	18	1.75
11360751--11360856	22	4.8	22	75	13	83	32	21	15	31	1.94
11360799--11360875	22	3.5	22	87	0	100	33	14	12	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129