genome.fa.s24.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  2  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219901--219952	20	2.6	20	84	0	68	28	26	17	26	1.97
220496--220584	45	2.0	45	84	4	117	19	32	16	31	1.94
224147--224183	12	3.2	12	96	3	67	45	16	24	13	1.83
224413--224461	23	2.1	23	84	0	62	30	22	34	12	1.91
224471--224606	45	3.0	45	82	0	173	25	28	19	26	1.98
234080--234109	10	3.1	10	95	4	53	36	0	0	63	0.95
234082--234111	9	3.2	9	95	4	51	36	0	0	63	0.95
244786--244892	48	2.2	48	80	6	119	35	20	20	23	1.96
255013--255112	44	2.2	45	82	1	121	25	32	20	23	1.98
262927--262987	7	8.1	7	75	13	59	24	0	0	75	0.80
262922--262984	13	4.5	14	75	21	53	25	0	0	74	0.82
263248--263287	8	4.9	8	82	17	55	2	2	7	87	0.71
263248--263288	9	4.8	9	79	11	50	2	2	7	87	0.70
263312--263397	34	2.4	36	79	11	97	50	15	16	18	1.79
263742--263982	33	7.2	33	71	13	163	30	17	17	35	1.92
263742--264057	67	4.7	69	76	11	196	28	17	18	36	1.93
263802--264119	133	2.4	133	82	5	356	29	16	18	35	1.93
263802--264114	67	4.7	67	75	11	275	29	16	19	35	1.93
264158--264241	31	2.6	33	75	9	91	26	13	22	38	1.91
264230--264347	34	3.5	33	77	15	116	28	17	14	38	1.89
264360--264422	29	2.2	29	85	5	83	38	23	17	20	1.93
264414--264504	33	2.7	35	79	3	96	29	12	19	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265524--265594	32	2.3	32	77	13	80	4	19	1	74	1.06
265553--265591	13	2.8	14	84	11	53	0	20	2	76	0.90
265540--265587	17	2.9	17	76	17	57	2	18	2	77	0.97
265570--265632	30	2.1	29	85	8	83	4	22	0	73	1.02
265990--266049	28	2.2	28	82	14	72	8	15	10	66	1.43
268304--268363	20	3.0	20	100	0	120	30	20	10	40	1.85
272048--272127	19	4.2	19	80	4	99	16	13	28	41	1.86
272146--272282	13	10.4	13	77	5	123	24	6	22	45	1.76
272171--272282	53	2.2	51	85	3	143	25	5	22	46	1.73
274275--274318	21	2.2	20	88	12	63	22	0	0	77	0.77
274277--274318	7	6.0	7	78	10	50	21	0	0	78	0.75
274277--274315	13	2.8	14	88	7	53	20	0	0	79	0.73
276670--276716	15	3.0	15	82	11	58	53	6	19	21	1.67
277262--277306	20	2.2	20	84	4	54	51	17	4	26	1.65
283190--283215	13	2.0	13	100	0	52	53	15	0	30	1.42
283661--283706	21	2.2	21	88	0	65	52	17	4	26	1.63
284058--284103	16	2.9	16	87	3	58	80	0	8	10	0.91
286483--286529	19	2.5	19	100	0	94	44	19	14	21	1.86
289045--289084	21	1.9	21	94	0	71	40	17	12	30	1.86
289876--289921	23	2.0	23	91	0	74	34	17	17	30	1.93
292072--292112	14	2.6	17	77	22	61	0	7	4	87	0.65
293454--293488	16	2.3	15	90	5	52	8	5	8	77	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295432--295457	7	3.7	7	100	0	52	26	0	0	73	0.84
297391--297416	11	2.4	11	100	0	52	46	0	7	46	1.31
298200--298255	26	2.1	27	83	3	69	19	7	23	50	1.72
298748--298777	12	2.6	12	94	5	53	0	6	13	80	0.91
299492--299563	31	2.3	31	78	4	83	26	2	5	65	1.28
299893--299943	20	2.7	19	77	14	52	7	3	9	78	1.07
300283--300787	41	12.5	40	74	10	300	37	11	13	37	1.82
300325--300709	122	3.2	119	78	9	368	37	12	13	36	1.82
300445--301166	80	8.9	81	70	13	295	36	11	15	36	1.83
300655--300941	121	2.4	122	80	6	343	35	10	16	37	1.83
300330--301048	40	17.7	40	71	10	311	37	11	15	36	1.83
300791--301178	166	2.4	159	81	5	418	36	10	17	35	1.85
301904--301961	21	2.7	21	81	2	71	36	20	10	32	1.87
303121--303218	16	5.7	16	68	18	54	2	19	2	76	0.98
303191--303219	14	2.1	14	93	6	51	6	20	0	72	1.07
305250--305279	12	2.5	12	94	0	51	33	10	0	56	1.32
305278--305528	3	83.7	3	86	1	297	33	26	1	39	1.64
307364--307429	27	2.4	27	85	5	89	18	13	25	42	1.87
307449--307508	24	2.5	24	89	5	86	18	11	18	51	1.75
307464--307513	13	4.0	13	70	19	52	20	10	16	54	1.70
311488--311519	11	2.9	11	95	0	55	0	12	0	87	0.54
311488--311522	10	3.3	10	88	11	52	0	14	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315112--315145	13	2.6	13	100	0	68	23	44	17	14	1.86
322336--322390	9	6.4	8	82	2	56	21	0	7	70	1.11
322336--322390	4	12.8	4	78	14	56	21	0	7	70	1.11
322336--322382	18	2.7	18	96	3	87	21	0	8	70	1.14
324298--324449	44	3.4	44	78	10	153	21	13	12	53	1.72
326578--326633	26	2.2	26	93	0	94	35	17	10	35	1.85
326942--327129	96	2.0	96	86	0	268	40	18	11	29	1.86
328064--328116	22	2.5	21	82	11	63	15	9	7	67	1.39
328690--328729	21	2.0	20	85	5	53	30	7	10	52	1.62
335473--335552	40	2.0	40	95	0	142	28	10	12	48	1.73
336570--336679	55	2.0	56	83	1	141	37	14	21	26	1.92
343339--343382	15	2.9	15	86	6	54	43	11	11	34	1.77
348804--348829	1	26.0	1	100	0	52	100	0	0	0	0.00
350120--350183	30	2.2	29	81	13	69	35	9	3	51	1.50
350723--350751	2	14.5	2	100	0	58	51	0	0	48	1.00
354008--354082	9	8.3	9	75	11	64	56	4	33	6	1.44
354008--354082	18	4.2	18	76	10	73	56	4	33	6	1.44
354022--354103	36	2.3	35	85	4	101	56	6	32	4	1.45
357130--357170	22	1.9	22	90	5	66	51	0	9	39	1.35
359910--359935	1	26.0	1	100	0	52	0	0	0	100	0.00
362201--362230	2	15.0	2	92	0	51	53	0	0	46	1.00
363462--363521	19	3.2	19	97	0	111	43	6	6	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364840--364880	21	2.0	21	90	0	64	41	12	14	31	1.83
364884--364977	34	2.8	35	84	9	106	40	21	7	30	1.81
366263--367034	161	4.8	161	79	5	724	42	14	10	32	1.80
368181--368217	13	2.8	13	87	0	56	62	5	8	24	1.44
371206--371241	14	2.4	16	82	17	51	16	0	11	72	1.12
371004--371453	231	2.0	230	97	0	855	23	24	17	35	1.95
371793--371855	26	2.4	26	91	0	99	44	7	7	39	1.63
373232--373299	29	2.3	29	100	0	136	45	41	5	7	1.56
375756--375797	20	2.0	20	86	13	59	33	16	0	50	1.46
377302--377345	21	2.1	21	86	0	61	25	20	25	29	1.99
379393--379578	63	3.0	63	76	5	189	32	13	11	41	1.81
380785--380825	9	4.3	9	90	9	64	0	12	0	87	0.53
380785--380829	19	2.3	19	92	3	72	0	13	0	86	0.57
380785--380829	10	4.6	10	91	5	74	0	13	0	86	0.57
381945--381991	12	4.0	12	80	5	60	36	0	0	63	0.94
382274--382323	26	1.9	26	84	8	66	18	4	6	72	1.22
382673--382718	22	2.1	22	83	0	56	36	13	15	34	1.86
382757--382811	22	2.5	23	82	8	69	27	21	21	29	1.99
382908--382988	22	3.7	22	74	12	67	32	13	23	30	1.93
395022--395119	45	2.1	46	84	9	126	56	10	2	31	1.44
400194--400274	31	2.6	31	82	7	94	30	0	9	59	1.30
403250--403289	16	2.6	16	88	4	55	80	2	7	10	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403601--403642	20	2.0	21	86	4	59	66	0	19	14	1.25
405561--405613	14	3.8	14	75	7	54	32	22	9	35	1.86
406244--406418	84	2.1	82	81	7	192	31	14	15	38	1.88
408310--408397	31	2.9	30	80	11	99	26	0	12	61	1.31
410420--410458	19	2.1	18	85	4	51	17	20	2	58	1.50
414581--414686	38	2.9	37	68	14	92	38	20	12	28	1.89
414763--414962	105	1.9	103	84	6	269	37	12	16	35	1.85
414989--415243	96	2.7	95	81	4	275	33	11	18	36	1.87
416236--416285	6	7.8	6	86	8	55	4	2	10	84	0.84
416221--416286	20	3.3	20	77	12	73	4	6	7	81	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129