genome.fa.s24.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  76  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12029952--12030032	16	5.2	16	72	18	64	79	3	3	13	1.01
12030933--12030984	19	2.8	19	73	2	52	75	1	7	15	1.12
12030916--12030989	6	11.7	6	73	13	51	74	1	6	17	1.11
12034172--12034210	19	2.2	18	90	9	62	28	2	15	53	1.55
12035304--12035856	284	1.9	284	95	0	1007	35	17	11	36	1.85
12037759--12037793	17	2.1	17	89	5	54	54	0	0	45	0.99
12038079--12038123	22	2.0	22	83	8	56	73	6	0	20	1.05
12039721--12039856	44	3.2	43	67	12	118	38	16	13	31	1.88
12039672--12040053	84	4.7	84	78	7	338	39	15	13	31	1.86
12039942--12040143	84	2.4	84	79	6	221	40	16	11	31	1.84
12039942--12040182	84	2.9	81	75	8	214	40	16	13	30	1.86
12043117--12043169	21	2.7	20	86	11	74	54	28	1	15	1.51
12053503--12053541	13	3.1	13	86	13	55	0	2	17	79	0.84
12054279--12054321	22	2.0	22	85	0	59	32	18	18	30	1.95
12054301--12054743	110	4.0	106	78	6	343	39	18	19	22	1.92
12054354--12054757	110	3.7	109	78	6	386	39	18	20	22	1.92
12054482--12054773	108	2.7	108	82	5	304	40	18	20	21	1.92
12056552--12056617	1	66.0	1	73	0	51	3	4	6	86	0.78
12057185--12057224	9	4.7	9	84	12	57	2	7	0	90	0.55
12057184--12057222	16	2.4	16	95	0	69	2	10	0	87	0.65
12063327--12063377	14	3.6	14	81	5	66	19	3	27	49	1.66
12063323--12063377	29	1.9	28	88	3	83	18	3	27	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12063324--12063385	29	2.2	28	82	2	70	20	4	27	46	1.71
12063443--12063473	14	2.2	14	94	0	53	22	6	29	41	1.78
12063467--12063511	21	2.1	21	88	8	65	22	0	26	51	1.49
12063961--12064010	19	2.7	19	74	17	52	72	6	0	22	1.07
12068087--12068141	21	2.5	22	82	8	76	34	16	1	47	1.57
12070412--12070448	19	1.9	19	94	0	65	2	0	37	59	1.12
12071566--12071611	21	2.2	21	92	3	76	52	2	0	45	1.13
12071605--12071667	8	7.6	8	77	13	65	61	0	3	34	1.12
12071611--12071660	26	1.9	26	88	8	75	64	0	4	32	1.12
12080971--12081073	39	2.7	39	83	7	115	53	0	0	45	1.06
12081228--12081282	19	3.0	19	78	5	60	41	0	1	56	1.10
12081993--12082043	17	2.7	19	77	20	54	50	0	0	49	1.00
12082301--12082371	32	2.2	32	80	7	81	52	2	0	45	1.15
12082425--12082481	15	3.7	15	74	4	60	49	0	5	45	1.24
12082788--12082872	41	2.0	43	90	4	138	36	14	8	41	1.75
12092726--12092763	11	3.5	11	79	13	51	57	2	0	39	1.12
12095834--12095860	5	5.4	5	100	0	54	77	0	0	22	0.76
12095910--12095935	7	3.7	7	100	0	52	88	0	0	11	0.52
12097743--12097777	16	2.2	16	90	5	54	51	0	0	48	1.00
12098815--12098903	13	7.2	12	72	18	67	41	0	2	56	1.12
12098841--12098904	12	4.9	13	79	11	69	43	0	1	54	1.09
12099743--12099778	13	2.8	13	82	0	54	44	0	2	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12103779--12103840	31	2.0	30	90	3	97	50	4	17	27	1.67
12104878--12104916	16	2.5	16	91	4	62	41	0	10	48	1.37
12112134--12112178	17	2.6	17	89	6	65	8	15	0	75	1.03
12115730--12115771	11	3.6	11	81	12	57	73	0	0	26	0.83
12123559--12124581	510	2.0	512	91	2	1644	23	25	10	40	1.86
12124830--12124955	48	2.7	47	83	9	154	30	9	5	53	1.56
12125575--12125619	23	2.0	23	90	0	72	57	13	8	20	1.62
12125630--12125672	22	2.0	22	81	9	52	23	16	2	58	1.50
12133026--12133084	28	2.2	27	82	11	68	50	0	1	47	1.11
12133042--12133106	28	2.3	29	84	12	91	50	0	0	49	1.00
12133082--12133125	21	2.1	20	83	8	52	40	0	2	56	1.11
12136644--12136669	9	2.9	9	100	0	52	23	57	7	11	1.59
12138529--12138573	22	2.0	22	82	0	54	40	6	0	53	1.27
12143738--12143771	2	17.0	2	100	0	68	0	50	0	50	1.00
12145529--12145581	22	2.4	22	93	6	90	49	0	0	50	1.00
12153338--12153410	24	2.8	26	76	17	62	39	1	0	58	1.06
12153394--12153420	12	2.2	12	100	0	54	33	0	0	66	0.92
12154089--12154119	6	5.2	6	96	0	53	87	12	0	0	0.55
12155264--12155317	23	2.3	23	87	0	72	53	3	3	38	1.36
12155310--12155372	19	3.3	19	81	14	76	53	7	4	33	1.51
12155517--12155568	14	3.8	14	84	2	70	78	5	1	13	1.01
12157424--12157464	20	2.0	21	86	13	59	60	2	2	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12162935--12162987	21	2.7	21	80	13	60	62	0	1	35	1.06
12165508--12165557	18	2.9	17	77	13	57	16	4	6	74	1.17
12165656--12165690	17	2.0	18	88	5	54	20	5	8	65	1.40
12166053--12166189	69	2.0	69	82	2	168	40	5	13	40	1.68
12171002--12171118	22	5.1	22	76	6	99	34	5	12	47	1.66
12171007--12171118	46	2.4	46	88	2	163	35	6	11	46	1.66
12171007--12171118	24	4.9	23	76	6	102	35	6	11	46	1.66
12171400--12171437	17	2.2	17	95	0	67	34	13	15	36	1.87
12171400--12171458	17	3.5	16	82	13	57	38	15	10	35	1.81
12171465--12171528	17	3.8	17	75	8	67	32	17	12	37	1.87
12171439--12171531	34	2.7	33	80	6	87	37	16	11	34	1.85
12171534--12171568	17	2.1	17	88	0	52	25	20	20	34	1.96
12171623--12171701	17	4.6	17	77	3	68	32	15	13	37	1.87
12173587--12173646	31	2.0	30	83	6	77	28	1	11	58	1.43
12175895--12175928	15	2.3	15	89	0	50	61	11	2	23	1.43
12176735--12176770	13	3.0	13	88	11	51	69	5	8	16	1.33
12176929--12176973	24	1.9	24	86	4	65	26	0	0	73	0.84
12176932--12176997	34	2.0	34	81	3	80	34	0	0	65	0.93
12176977--12177242	133	2.0	134	88	4	405	36	3	7	53	1.44
12177399--12177423	2	12.5	2	100	0	50	52	0	0	48	1.00
12178270--12178327	25	2.2	25	80	14	64	34	0	0	65	0.93
12178283--12178324	15	2.8	15	81	0	57	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12183931--12183980	18	2.8	18	82	8	59	64	4	0	32	1.12
12183933--12183975	19	2.3	18	84	4	50	67	4	0	27	1.10
12197860--12197927	25	2.7	24	78	14	66	48	4	0	47	1.22
12200675--12200699	12	2.1	12	100	0	50	44	0	0	56	0.99
12201890--12202123	128	1.8	125	80	8	276	39	11	9	39	1.75
12201833--12202265	125	3.4	124	73	7	343	39	11	10	38	1.76
12203158--12203190	16	2.0	17	94	5	59	66	0	6	27	1.15
12203342--12203389	2	24.0	2	91	0	78	50	0	0	50	1.00
12205520--12205559	20	2.0	20	85	0	53	40	10	12	37	1.77
12209191--12209228	20	1.9	20	88	0	58	42	0	0	57	0.98
12209168--12209233	32	2.0	33	85	2	89	42	0	1	56	1.08
12209198--12209237	20	2.1	19	86	9	55	40	0	0	60	0.97
12210098--12210128	6	5.2	6	100	0	62	32	19	0	48	1.49
12210452--12210494	22	1.9	23	85	4	61	39	0	0	60	0.97
12212792--12212856	26	2.4	25	87	10	85	58	1	9	30	1.39
12212793--12212836	13	3.4	13	75	12	54	56	2	9	31	1.43
12213075--12213696	338	1.8	340	82	3	813	33	7	14	44	1.74
12214575--12214697	6	18.3	6	69	24	61	21	3	1	73	1.05
12214581--12214650	19	3.6	18	74	12	59	25	2	0	71	1.00
12214575--12214724	34	4.5	33	73	18	96	22	3	2	72	1.09
12214638--12214746	30	3.8	29	77	16	86	21	4	2	71	1.17
12214659--12214750	27	3.6	27	76	14	79	21	3	2	72	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12215592--12215625	3	11.0	3	87	6	50	32	2	0	64	1.08
12215588--12215625	19	2.0	19	94	0	67	31	2	0	65	1.06
12215595--12215625	16	1.9	16	93	0	53	32	3	0	64	1.09
12215705--12215778	30	2.4	30	90	2	112	40	6	17	35	1.76
12215740--12215992	117	2.2	114	85	7	323	42	7	14	35	1.73
12215735--12215994	57	4.5	58	84	6	323	42	6	14	36	1.72
12215972--12216166	99	2.0	97	85	7	243	31	10	9	49	1.68
12220045--12220075	12	2.6	12	94	0	53	83	0	9	6	0.79
12221759--12222029	41	6.6	40	78	11	205	27	15	18	38	1.91
12221759--12221983	83	2.8	80	87	6	301	28	15	18	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129