Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  104  of  129  ( 15374 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17302063--17302087
13
1.9
13
100
0
50
8
12
0
80
0.92
17302240--17302277
20
1.9
20
89
10
60
21
10
0
68
1.19
17312253--17312278
2
13.0
2
100
0
52
50
0
0
50
1.00
17320061--17320090
15
2.1
14
93
6
51
36
6
0
56
1.26
17320069--17320377
11
28.9
11
66
13
119
37
3
5
53
1.40
17320076--17320116
21
2.0
21
90
0
64
43
2
2
51
1.28
17320134--17320173
19
2.1
19
85
0
53
37
2
5
55
1.35
17319999--17320365
201
1.8
201
89
3
578
38
3
5
52
1.42
17322509--17322546
2
19.5
2
83
5
51
50
2
2
44
1.30
17324158--17324215
22
2.7
21
83
2
71
36
5
13
44
1.66
17324538--17324619
22
3.7
22
75
0
65
39
10
6
43
1.65
17324647--17324863
11
19.8
11
64
13
56
37
4
6
52
1.47
17324504--17324717
88
2.4
86
75
4
196
38
6
8
46
1.60
17324734--17324782
22
2.2
22
81
0
62
36
2
8
53
1.43
17324744--17324827
22
3.8
22
75
6
71
41
3
5
48
1.45
17324871--17324913
20
2.2
20
91
0
68
23
6
20
48
1.73
17327778--17328416
162
4.0
162
91
1
998
53
3
6
36
1.44
17327778--17328416
323
2.0
323
91
1
1032
53
3
6
36
1.44
17329922--17330365
56
7.7
56
78
11
432
36
9
5
48
1.58
17330171--17330220
16
3.1
17
80
8
59
34
2
4
60
1.27
17330376--17330475
8
10.9
9
70
15
55
79
2
7
12
1.02
17330381--17330475
23
4.0
23
73
10
66
80
2
6
11
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17330381--17330486
5
20.6
5
72
18
67
78
1
5
14
1.02
17330381--17330473
17
5.6
16
75
11
64
79
2
6
11
1.00
17330381--17330486
11
9.2
11
73
15
63
78
1
5
14
1.02
17331325--17331406
18
4.2
21
74
14
61
68
7
3
20
1.30
17331493--17331596
11
9.7
11
67
25
55
78
1
1
17
0.93
17331493--17331592
37
2.7
37
79
13
109
78
2
2
18
0.95
17331493--17331585
6
15.2
6
79
12
91
77
2
2
18
0.97
17331773--17331871
42
2.3
44
79
6
114
37
16
18
28
1.92
17331883--17332095
41
5.2
41
88
4
297
37
20
15
25
1.93
17331883--17332089
79
2.5
79
89
5
297
38
19
15
25
1.92
17333103--17333137
7
4.9
7
93
6
61
11
0
0
88
0.51
17333103--17333137
15
2.4
14
95
4
61
11
0
0
88
0.51
17338013--17338042
15
2.1
14
93
6
51
6
36
6
50
1.55
17343645--17343682
14
2.4
16
83
16
53
39
0
7
52
1.31
17343646--17343672
14
1.9
14
100
0
54
29
0
3
66
1.09
17343501--17343949
59
7.8
58
78
10
431
36
9
6
46
1.63
17343765--17343789
13
1.9
13
100
0
50
32
0
4
64
1.12
17343754--17343800
14
3.1
16
76
14
55
38
2
4
55
1.31
17343965--17344051
5
16.6
5
74
15
70
77
1
3
18
0.98
17343966--17344026
23
2.6
23
82
7
70
80
1
3
14
0.92
17343965--17344037
6
12.5
6
74
17
57
79
1
4
15
0.95
17343965--17344042
19
4.3
18
79
14
81
78
1
3
16
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17343964--17344035
29
2.4
30
86
9
103
77
1
5
15
1.01
17343965--17344040
11
6.6
11
76
11
55
78
1
3
15
0.96
17343995--17344037
17
2.6
16
88
7
59
83
0
2
13
0.74
17343996--17344093
4
25.0
4
75
20
66
72
2
1
24
1.02
17344876--17344922
9
5.4
9
80
7
53
74
6
4
14
1.17
17344906--17344954
22
2.3
21
86
13
66
65
6
6
22
1.38
17345079--17345139
6
10.3
6
77
11
56
78
1
3
16
0.96
17345084--17345117
11
3.0
11
86
4
50
73
0
5
20
1.04
17346512--17346559
5
9.6
5
95
0
69
62
0
31
6
1.20
17346527--17346565
15
2.5
15
79
4
51
64
0
30
5
1.15
17347468--17347498
15
2.1
15
93
0
53
9
12
3
74
1.19
17351378--17351415
19
2.0
20
94
5
69
31
2
10
55
1.48
17352917--17352951
15
2.4
15
90
4
54
54
0
0
45
0.99
17354776--17354818
14
3.0
15
83
10
54
48
2
0
48
1.14
17354786--17354887
33
2.9
34
72
19
84
48
3
0
48
1.20
17354990--17355014
5
5.0
5
100
0
50
80
0
0
20
0.72
17355742--17355782
18
2.2
19
86
4
57
56
2
0
41
1.13
17355823--17355864
22
2.0
21
82
17
52
40
7
2
50
1.43
17363710--17363755
23
2.0
23
95
0
83
23
15
13
47
1.80
17364992--17365135
47
3.1
43
69
22
130
40
1
3
54
1.26
17365015--17365156
14
10.4
13
66
23
53
41
1
2
54
1.21
17364991--17365200
95
2.2
96
90
5
345
38
2
2
57
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17365024--17365167
43
3.1
43
70
22
139
38
2
2
56
1.23
17365428--17365470
14
3.1
14
80
9
52
39
0
0
60
0.97
17366606--17366832
112
2.0
111
80
8
255
37
9
6
47
1.61
17366812--17367193
113
3.4
113
75
7
285
35
8
6
48
1.60
17366767--17367103
112
3.0
111
76
7
315
33
10
6
49
1.63
17367004--17367047
20
2.1
20
83
8
52
27
4
6
61
1.41
17367731--17367829
41
2.4
41
88
8
139
32
18
8
41
1.79
17374615--17374749
51
2.7
50
83
4
164
37
8
15
39
1.77
17378130--17378160
9
3.6
9
95
4
55
93
0
0
6
0.35
17378130--17378169
16
2.4
16
87
4
53
90
0
5
5
0.57
17379181--17379264
29
2.9
29
77
18
84
19
15
17
47
1.83
17379376--17379482
34
3.1
34
77
12
119
35
13
15
35
1.87
17379363--17379573
69
3.1
69
78
4
219
35
15
14
35
1.88
17379398--17379501
34
3.0
33
75
19
97
34
13
15
36
1.87
17379521--17379554
17
2.0
17
88
0
50
32
14
14
38
1.87
17379363--17379625
138
1.9
138
83
1
339
34
15
13
36
1.87
17380088--17380226
51
2.7
51
81
5
156
37
7
15
40
1.74
17380735--17380798
25
2.7
23
77
18
67
20
6
3
70
1.23
17384519--17384586
24
2.9
24
82
8
79
19
2
4
73
1.13
17384522--17384590
32
2.2
31
85
7
95
17
1
4
76
1.02
17384527--17384590
16
3.9
17
82
10
80
17
1
4
76
1.03
17384532--17384590
8
7.4
8
80
0
64
16
1
3
77
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17385480--17385522
4
10.8
4
79
0
50
18
4
2
74
1.10
17386438--17386491
4
14.0
4
78
18
53
22
0
1
75
0.89
17387429--17387481
24
2.2
24
87
9
74
15
3
1
79
0.96
17387415--17387478
8
7.8
8
77
5
56
14
4
4
76
1.11
17387559--17387606
25
1.9
25
83
8
62
45
2
8
43
1.45
17392178--17392248
17
4.1
17
76
8
72
77
1
8
12
1.05
17392175--17392237
24
2.6
25
85
7
94
74
1
9
14
1.13
17393307--17393377
33
2.2
33
84
0
88
26
14
23
35
1.93
17393611--17394025
44
9.3
44
79
5
325
26
10
17
45
1.80
17393611--17393918
133
2.3
132
84
5
370
26
10
18
45
1.81
17393662--17394008
133
2.6
133
81
6
373
27
10
17
44
1.82
17393717--17394025
45
6.9
46
78
11
148
28
10
17
44
1.82
17393610--17394025
89
4.7
90
76
9
286
26
10
17
45
1.80
17394295--17394335
16
2.5
16
88
4
55
19
0
4
75
0.98
17394449--17394495
3
15.7
3
100
0
94
68
0
0
31
0.90
17395293--17395338
4
12.0
4
81
9
51
17
2
4
76
1.06
17395562--17395606
23
1.9
24
86
4
65
80
2
4
13
0.97
17396376--17396584
104
2.0
105
89
0
321
34
12
17
35
1.88
17400128--17400234
8
13.4
8
69
22
57
73
2
11
12
1.19
17400125--17400240
7
15.9
7
71
24
62
71
2
12
13
1.24
17400125--17400248
17
8.2
16
72
16
79
70
2
12
13
1.26
17401302--17401373
33
2.2
33
82
0
81
23
15
25
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17401577--17402001
45
9.8
45
75
9
314
26
11
16
44
1.82
17401727--17401843
37
3.0
37
79
9
99
27
8
20
43
1.81
17402299--17402352
25
2.3
23
80
6
63
12
3
11
72
1.25
17402343--17402387
24
1.9
23
86
4
63
15
4
11
68
1.34
17402407--17402452
3
15.3
3
100
0
92
67
0
0
32
0.91
17403802--17403893
43
2.1
43
82
6
105
56
8
9
25
1.60
17405602--17405661
31
1.9
31
86
0
84
36
11
11
40
1.78
17405808--17405884
14
5.5
13
75
16
57
49
5
1
44
1.33
17406832--17406861
10
3.1
10
95
4
53
36
0
0
63
0.95
17406834--17406863
9
3.2
9
95
4
51
36
0
0
63
0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129