genome.fa.s24.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  28  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3827223--3827275	26	2.0	26	96	0	97	26	24	20	28	1.99
3828113--3828165	26	2.0	26	88	0	79	28	22	18	30	1.98
3829023--3829075	26	2.0	26	100	0	106	30	26	16	26	1.97
3822521--3830704	890	9.1	890	84	5	9820	25	24	24	25	2.00
3829915--3829967	26	2.0	26	85	7	72	32	24	15	28	1.95
3829941--3831428	719	2.1	715	88	3	2256	26	24	22	25	2.00
3830662--3834072	900	3.8	892	86	3	4536	26	24	23	25	2.00
3833299--3834776	708	2.1	707	87	1	2120	26	23	22	26	2.00
3837099--3837144	24	1.9	24	95	0	83	19	52	13	15	1.75
3838863--3838915	26	2.0	26	92	0	88	26	26	20	26	1.99
3840616--3840667	26	2.0	26	96	0	95	30	21	21	26	1.98
3841496--3841548	26	2.0	26	89	7	81	26	24	20	28	1.99
3839765--3843157	896	3.9	880	84	5	4185	26	24	23	25	2.00
3842393--3843851	713	2.0	714	89	1	2237	26	24	23	25	2.00
3843982--3845791	902	2.0	901	87	1	2597	25	25	23	25	2.00
3848116--3848168	26	2.0	26	92	0	88	28	24	18	28	1.98
3846388--3849295	896	3.2	894	88	2	4135	24	24	25	25	2.00
3849008--3849060	26	2.0	26	96	0	97	26	28	20	24	1.99
3849682--3849734	26	2.0	26	85	7	72	32	22	18	26	1.97
3851424--3851474	26	2.0	26	96	0	93	27	25	19	27	1.99
3852326--3852378	26	2.0	26	92	0	88	28	24	18	28	1.98
3853001--3853053	26	2.0	26	92	0	88	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3854856--3854908	26	2.0	26	100	0	106	26	26	20	26	1.99
3855221--3859996	878	5.4	873	84	4	5907	26	24	23	25	2.00
3858299--3858351	26	2.0	26	96	0	97	26	24	20	28	1.99
3855222--3859980	887	5.4	883	84	4	5542	26	24	23	25	2.00
3859201--3859253	26	2.0	26	96	0	97	28	24	20	26	1.99
3860821--3860873	26	2.0	26	92	0	88	26	22	20	30	1.98
3861713--3861765	26	2.0	26	92	0	88	26	26	20	26	1.99
3862610--3862688	26	3.0	26	92	0	131	26	25	18	29	1.98
3863526--3863578	26	2.0	26	92	0	88	28	22	20	28	1.99
3859947--3873254	902	14.8	902	86	3	16633	25	24	23	25	2.00
3864428--3864480	26	2.0	26	96	0	97	28	20	20	30	1.98
3866214--3866266	26	2.0	26	92	0	88	28	28	16	26	1.97
3868027--3868079	26	2.0	26	96	0	97	26	24	20	28	1.99
3869787--3869839	26	2.0	26	88	0	79	28	22	20	28	1.99
3871574--3871625	26	2.0	26	88	0	77	25	23	23	28	1.99
3872483--3872535	26	2.0	26	88	0	79	26	26	22	24	2.00
3873851--3873903	26	2.0	26	96	0	97	28	26	18	26	1.98
3874754--3874806	26	2.0	26	92	0	88	30	26	16	26	1.97
3873255--3875532	902	2.5	899	88	3	3300	26	24	23	25	2.00
3874780--3876253	722	2.1	709	86	2	2072	26	22	23	27	2.00
3876200--3876555	159	2.2	159	93	0	595	21	26	28	24	1.99
3883570--3883625	26	2.2	26	93	0	94	32	25	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3884885--3884937	26	2.0	26	96	0	97	26	24	22	26	2.00
3885453--3885505	26	2.0	26	96	0	97	28	24	20	26	1.99
3884771--3886459	551	3.0	564	91	3	2704	22	24	26	25	2.00
3886899--3886949	26	2.0	26	92	0	84	29	27	13	29	1.94
3888087--3888139	26	2.0	26	100	0	106	26	26	20	26	1.99
3889426--3889478	26	2.0	26	100	0	106	26	26	20	26	1.99
3895249--3895305	23	2.5	23	97	0	105	43	7	17	31	1.76
3896774--3896826	26	2.0	26	88	0	79	28	20	26	24	1.99
3897676--3897728	26	2.0	26	96	0	97	28	13	26	32	1.93
3898551--3898603	26	2.0	26	96	0	97	26	22	24	26	2.00
3900338--3900390	26	2.0	26	88	0	79	30	18	22	28	1.98
3896800--3902998	876	7.0	870	84	5	7125	25	24	24	25	2.00
3906111--3906162	26	2.0	26	96	0	95	28	15	25	30	1.96
3905301--3909414	895	4.6	901	85	2	5229	25	23	24	26	2.00
3908794--3908843	26	2.0	26	96	4	93	26	20	28	26	1.99
3909970--3910020	26	2.0	26	88	0	75	29	11	27	31	1.92
3909468--3910369	445	2.0	447	82	4	1109	24	24	26	24	2.00
3910762--3910794	11	3.0	11	100	0	66	18	36	27	18	1.94
3910874--3910926	26	2.0	26	92	0	88	26	18	24	30	1.98
3911426--3911478	26	2.0	26	96	0	97	26	20	24	28	1.99
3911992--3912043	27	2.0	26	92	3	86	28	23	21	26	1.99
3913304--3913356	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3920343--3920608	137	1.9	137	93	0	460	20	28	29	21	1.98
3922017--3922069	26	2.0	26	96	0	97	26	18	26	28	1.98
3922904--3922956	26	2.0	26	96	0	97	26	18	26	28	1.98
3921294--3926990	889	6.4	892	84	5	6677	25	23	24	26	2.00
3923800--3923852	26	2.0	26	88	0	79	24	22	26	26	2.00
3927304--3927356	26	2.0	26	96	0	97	28	20	24	26	1.99
3926988--3931578	850	5.2	879	74	13	3725	25	23	24	26	2.00
3928748--3929104	177	2.0	177	92	1	590	29	18	24	27	1.98
3929262--3929314	26	2.0	26	88	0	79	28	18	22	30	1.98
3930845--3930895	26	2.0	26	96	0	93	27	17	27	27	1.98
3935986--3936038	26	2.0	26	85	0	70	28	20	16	33	1.95
3938446--3938498	26	2.0	26	92	0	88	28	20	20	30	1.98
3940816--3940867	25	2.0	26	89	10	81	26	26	23	23	2.00
3945199--3945251	26	2.0	26	92	0	88	28	24	18	28	1.98
3947816--3947868	26	2.0	26	96	0	97	28	26	18	26	1.98
3948719--3948770	26	2.0	26	92	0	86	28	25	19	26	1.98
3939079--3954427	902	17.5	884	82	7	15679	26	24	23	25	2.00
3951352--3951404	26	2.0	26	96	0	97	28	26	18	26	1.98
3954167--3954738	309	1.9	309	89	1	905	26	21	22	30	1.99
3955181--3955233	26	2.0	26	96	0	97	28	24	20	26	1.99
3955277--3956925	706	2.3	710	86	4	2244	26	24	22	25	2.00
3956171--3958325	902	2.4	899	86	2	2939	24	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3959653--3959705	26	2.0	26	96	0	97	26	24	20	28	1.99
3958780--3960792	902	2.2	897	84	3	2493	25	24	25	24	2.00
3961226--3961627	184	2.2	184	84	3	522	22	27	27	22	1.99
3961569--3961620	26	2.0	26	96	3	97	26	26	19	26	1.99
3962476--3962525	26	1.9	26	100	0	100	24	26	20	30	1.98
3963375--3963427	26	2.0	26	96	0	97	28	24	20	26	1.99
3961418--3964162	894	3.1	899	87	2	3964	25	24	24	25	2.00
3964985--3965037	26	2.0	26	92	0	88	28	28	18	24	1.98
3966741--3966793	26	2.0	26	96	0	97	26	24	22	26	2.00
3969129--3969217	26	3.5	26	87	3	119	24	29	14	31	1.95
3970918--3970970	26	2.0	26	96	0	97	26	24	20	28	1.99
3971787--3971839	26	2.0	26	92	0	88	28	24	18	28	1.98
3970529--3974390	893	4.3	884	83	6	4702	25	24	24	25	2.00
3975211--3975262	26	2.0	26	96	3	97	26	25	21	26	1.99
3974335--3976862	901	2.8	880	85	5	3390	25	24	23	25	2.00
3976939--3976971	11	3.0	11	95	0	57	15	36	39	9	1.79
3978823--3979237	59	7.0	59	79	10	404	32	12	9	45	1.75
3978835--3979239	121	3.4	117	81	9	473	32	12	9	45	1.73
3979244--3979300	28	2.0	28	87	12	82	75	0	8	15	1.04
3979249--3979334	32	2.7	31	82	8	93	75	1	8	15	1.09
3979287--3979339	26	2.0	27	85	14	74	77	1	7	13	1.06
3979366--3979410	21	2.1	21	88	8	65	82	4	0	13	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3979363--3979411	17	2.9	17	85	11	73	81	4	0	14	0.83
3979734--3979775	20	2.1	20	90	0	66	11	21	28	38	1.89
3980251--3980292	21	2.0	22	85	4	59	66	0	7	26	1.17
3980274--3980326	22	2.4	22	80	0	61	73	1	0	24	0.93
3980302--3980342	15	2.8	15	85	10	50	80	4	0	14	0.87
3980276--3980376	52	1.9	53	82	11	127	71	1	0	26	0.97
3980391--3980425	6	5.8	6	90	10	54	80	0	0	20	0.72
3980578--3980607	15	1.9	15	93	6	51	3	0	6	90	0.56
3980681--3980718	8	4.8	8	87	9	51	5	2	2	89	0.64
3980678--3980713	18	2.0	18	89	10	56	8	5	2	83	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129