genome.fa.s24.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  21  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2944534--2944589	26	2.2	26	93	0	94	26	19	23	30	1.98
2947684--2947734	26	2.0	26	92	0	84	27	15	25	31	1.96
2948594--2948644	27	1.9	26	92	4	84	27	19	27	25	1.99
2948600--2948654	27	2.0	27	86	6	76	25	21	27	25	2.00
2949491--2949543	26	2.0	26	92	0	88	26	16	26	30	1.97
2946070--2951084	852	5.7	897	83	6	5666	26	23	24	26	2.00
2954033--2954085	26	2.0	26	92	0	88	28	24	18	28	1.98
2954943--2954999	26	2.2	26	93	0	96	29	22	17	29	1.97
2956734--2956786	26	2.0	26	92	0	88	26	26	20	26	1.99
2957208--2957295	26	3.3	26	83	9	106	50	10	10	29	1.69
2956350--2958199	950	1.9	950	87	3	2727	25	24	23	25	2.00
2958580--2958632	26	2.0	26	85	0	70	26	22	20	30	1.98
2954028--2960239	895	6.9	894	84	6	7083	26	24	23	25	2.00
2963805--2963854	26	1.9	26	95	0	91	32	26	16	26	1.96
2960212--2966960	902	7.5	904	85	3	8457	25	24	24	25	2.00
2965610--2965662	26	2.0	26	88	0	79	28	22	18	30	1.98
2966514--2966566	26	2.0	26	96	0	97	26	24	20	28	1.99
2967934--2967963	4	7.5	4	92	0	51	0	70	26	3	1.03
2967934--2967966	12	2.8	12	95	0	57	0	66	27	6	1.15
2968143--2968195	26	2.0	26	88	0	79	28	22	18	30	1.98
2967261--2971603	902	4.8	902	87	2	5981	25	25	24	24	2.00
2969949--2970001	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2967143--2971595	901	5.0	879	86	4	5730	25	25	24	24	2.00
2970818--2972299	708	2.1	709	88	2	2152	26	24	23	25	2.00
2972425--2972479	26	2.1	26	96	0	101	23	27	20	29	1.99
2972452--2973938	718	2.1	709	88	2	2192	27	24	23	25	2.00
2975840--2975892	26	2.0	26	96	0	97	28	26	18	26	1.98
2977635--2977687	26	2.0	26	96	0	97	28	26	18	26	1.98
2973173--2978322	895	5.7	897	87	2	7083	25	24	24	25	2.00
2978359--2978411	26	2.0	26	92	0	88	32	26	13	28	1.93
2977630--2979801	724	3.0	721	88	3	2983	26	24	22	25	2.00
2977661--2979869	717	3.1	713	88	3	3055	26	24	22	25	2.00
2979979--2980031	26	2.0	26	92	0	88	28	28	18	24	1.98
2980913--2982355	710	2.0	703	87	4	2062	27	23	22	25	2.00
2982484--2982535	26	2.0	26	92	0	86	28	21	23	26	1.99
2982510--2983991	718	2.1	712	88	2	2188	26	24	22	26	2.00
2984095--2984147	26	2.0	26	100	0	106	26	26	20	26	1.99
2985870--2985920	26	2.0	26	96	0	93	29	23	17	29	1.97
2986758--2986810	26	2.0	26	92	0	88	30	26	16	26	1.97
2987458--2987482	12	2.1	12	100	0	50	0	64	28	8	1.22
2987660--2987712	26	2.0	26	100	0	106	26	26	20	26	1.99
2983203--2997632	878	16.1	883	80	8	13805	25	24	24	25	2.00
2990486--2990538	26	2.0	26	100	0	106	26	26	20	26	1.99
2991373--2991425	26	2.0	26	96	0	97	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2993135--2993187	26	2.0	26	92	0	88	26	26	18	28	1.98
2994016--2994068	26	2.0	26	92	0	88	28	24	18	28	1.98
2989619--2997652	892	9.0	890	84	5	9738	25	24	24	25	2.00
2995813--2995865	26	2.0	26	92	0	88	28	22	20	28	1.99
2996692--2996744	26	2.0	26	96	0	97	26	20	20	32	1.98
2997596--2997648	26	2.0	26	92	0	88	26	24	18	30	1.98
2998679--2998731	26	2.0	26	96	0	97	26	24	20	28	1.99
2997622--3003454	878	6.5	899	84	4	7085	25	25	24	25	2.00
3001360--3001412	26	2.0	26	96	0	97	24	26	22	26	2.00
3003140--3003190	26	2.0	26	92	7	86	27	27	15	29	1.96
3003613--3003673	26	2.3	26	94	2	104	26	19	19	34	1.96
3002984--3003913	469	2.0	465	82	5	1116	20	25	28	25	1.99
3004812--3004864	26	2.0	26	85	0	70	32	24	15	28	1.95
3004169--3007377	875	3.6	889	86	5	4178	26	24	23	25	2.00
3006579--3008789	709	3.1	710	86	5	2990	26	23	23	26	2.00
3010155--3010518	201	1.8	201	92	1	622	26	28	21	23	1.99
3010715--3010767	26	2.0	26	96	0	97	26	24	20	28	1.99
3013340--3013392	26	2.0	26	88	0	79	26	24	20	28	1.99
3010741--3021198	889	11.9	864	81	8	10455	26	24	23	25	2.00
3017738--3017789	26	2.0	26	88	0	77	26	25	19	28	1.98
3020420--3020472	26	2.0	26	92	0	88	28	24	18	28	1.98
3018786--3021136	912	2.6	909	86	4	3196	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3020612--3021783	585	2.0	585	99	0	2299	29	24	19	26	1.99
3021853--3022115	143	1.8	143	86	3	377	17	25	34	23	1.96
3023970--3025445	709	2.1	692	89	2	2236	26	24	23	26	2.00
3026796--3027173	202	1.9	202	88	3	573	25	29	20	24	1.99
3027352--3027413	28	2.3	27	86	10	92	27	24	20	27	1.99
3028254--3037871	892	10.8	890	83	6	11062	26	24	23	25	2.00
3031794--3031846	26	2.0	26	100	0	106	26	22	20	30	1.98
3034415--3034466	26	2.0	26	88	0	77	26	25	19	28	1.98
3036880--3036913	12	2.8	12	86	0	50	0	64	26	8	1.22
3037094--3037146	26	2.0	26	92	0	88	28	24	18	28	1.98
3035472--3037889	910	2.7	911	87	4	3378	26	25	22	25	2.00
3037940--3038201	143	1.8	143	86	3	384	17	24	34	23	1.95
3039064--3039520	57	7.7	57	84	7	565	33	12	8	45	1.72
3039330--3039453	66	1.9	66	91	3	205	33	12	7	47	1.68
3039273--3039512	125	1.9	125	88	3	367	33	12	8	45	1.73
3039559--3039619	16	3.8	16	82	4	70	78	1	6	13	1.01
3039561--3039637	6	12.8	6	74	15	52	76	1	7	14	1.06
3039541--3039623	27	3.1	25	80	16	87	75	1	7	15	1.07
3039561--3039636	11	6.9	11	73	13	59	76	1	7	14	1.07
3039583--3039636	27	2.0	28	89	10	85	77	1	7	12	1.05
3040552--3040641	4	23.0	4	72	17	55	68	1	0	30	0.96
3040549--3040585	14	2.6	14	91	4	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3040552--3040641	22	4.2	22	72	16	73	68	1	0	30	0.96
3040464--3040590	47	2.6	50	73	13	120	68	0	4	25	1.14
3040654--3040682	11	2.5	12	94	5	51	79	0	0	20	0.74
3040938--3040983	10	4.7	10	84	10	60	2	6	4	86	0.75
3040937--3040985	19	2.6	19	93	0	80	2	8	4	85	0.79
3040868--3041238	126	3.0	123	85	5	510	26	13	12	47	1.77
3041062--3041112	1	51.0	1	88	0	75	0	0	5	94	0.32
3041062--3041109	18	2.6	18	96	3	87	0	0	6	93	0.34
3041062--3041112	26	2.0	25	96	3	93	0	0	5	94	0.32
3040868--3041235	128	2.9	128	87	6	514	26	13	12	48	1.77
3041239--3041559	42	7.7	42	88	4	463	34	23	17	24	1.96
3041239--3041646	125	3.4	125	86	6	533	34	23	17	24	1.96
3041534--3041587	28	1.9	28	92	0	90	29	35	12	22	1.91
3041562--3041646	41	2.0	42	93	2	145	32	24	17	24	1.97
3041492--3041628	69	2.0	70	95	1	249	32	27	16	23	1.95
3041846--3041982	43	3.2	42	76	13	136	34	16	13	36	1.87
3042166--3042224	22	2.7	22	84	7	75	33	18	8	38	1.81
3043291--3043333	16	2.7	16	88	0	59	6	16	0	76	0.99
3043291--3043357	17	4.1	17	86	5	84	5	17	0	76	0.99
3047284--3047683	117	3.4	117	84	9	558	34	12	8	44	1.73
3047284--3047683	59	6.7	58	83	7	509	34	12	8	44	1.73
3047436--3047673	123	1.9	123	87	5	347	34	13	7	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3047702--3047760	17	3.5	17	78	15	61	76	0	8	15	1.01
3047706--3047751	23	1.9	23	86	8	65	76	0	8	15	1.02
3047725--3047777	16	3.2	16	81	2	61	77	1	7	13	1.06
3047707--3047795	6	14.7	6	72	18	51	76	1	7	14	1.06
3047707--3047786	33	2.3	34	81	12	92	76	1	7	15	1.07
3047703--3047794	27	3.3	27	79	17	84	76	1	8	14	1.08
3047717--3047794	11	7.2	11	72	15	56	76	1	7	14	1.05
3047817--3047867	4	12.5	4	78	12	50	76	5	0	17	0.98
3047828--3047867	12	3.2	12	96	3	71	77	7	0	15	0.98
3047718--3047871	27	6.0	25	73	16	77	74	4	3	17	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129