genome.fa.s24.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  90  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14532819--14532873	28	2.0	28	82	7	67	72	3	1	21	1.09
14532977--14533016	16	2.5	17	80	12	57	67	0	2	30	1.04
14533012--14533044	17	2.0	17	94	5	59	78	6	9	6	1.08
14538075--14538107	16	2.0	17	94	5	59	39	6	0	54	1.25
14539726--14539760	5	6.8	5	93	3	52	45	0	0	54	0.99
14541561--14541608	18	2.7	18	83	6	62	35	0	2	62	1.07
14546770--14546812	14	3.0	14	86	3	50	44	2	0	53	1.13
14547568--14547659	29	3.1	28	71	18	71	41	2	2	54	1.25
14547606--14547670	29	2.2	29	78	5	69	40	4	0	55	1.21
14547698--14547754	29	1.9	30	92	3	98	54	1	3	40	1.28
14547697--14547809	29	3.9	29	73	11	81	53	1	5	38	1.34
14552444--14552493	24	2.1	23	85	3	64	48	6	10	36	1.61
14552484--14552551	24	2.8	23	75	18	66	39	7	16	36	1.76
14552460--14552585	47	2.6	48	76	8	123	42	7	14	35	1.75
14554738--14555131	61	6.4	61	83	4	400	29	13	9	47	1.74
14554738--14555131	123	3.2	121	82	4	436	29	13	9	47	1.74
14556337--14556412	22	3.2	23	82	14	84	67	0	0	32	0.91
14556358--14556421	12	5.5	12	92	3	96	68	0	0	31	0.90
14556358--14556421	23	2.8	22	90	7	92	68	0	0	31	0.90
14557125--14557176	24	2.2	23	79	3	59	82	9	1	5	0.90
14568056--14570000	965	2.0	965	87	4	2762	38	9	12	39	1.75
14570396--14570451	5	10.6	5	75	17	51	62	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14570395--14570450	11	5.2	11	81	14	64	64	0	3	32	1.11
14570512--14570561	11	4.2	12	82	7	59	56	0	0	44	0.99
14570512--14570565	19	2.9	19	71	15	51	57	0	0	42	0.98
14570502--14570573	31	2.3	31	81	9	76	51	1	0	47	1.09
14570502--14570569	30	2.2	31	79	10	77	51	1	0	47	1.09
14576889--14576929	21	2.0	21	90	0	64	41	12	21	24	1.87
14594595--14594648	20	2.5	22	73	14	58	66	5	1	25	1.23
14599436--14599460	12	2.1	12	100	0	50	76	0	16	8	1.02
14601814--14601851	20	1.9	20	100	0	76	26	26	10	36	1.89
14604973--14605011	18	2.2	18	86	13	55	51	0	10	38	1.36
14604973--14605012	19	2.2	17	86	8	53	52	0	10	37	1.35
14606788--14606822	2	18.0	2	94	5	63	48	0	0	51	1.00
14607677--14607795	26	4.6	26	74	14	95	47	0	1	49	1.17
14615174--14615232	25	2.5	23	78	13	66	32	0	1	66	1.02
14621266--14621313	24	2.0	24	92	8	80	37	2	0	60	1.09
14621743--14621827	23	3.5	23	69	18	55	56	1	2	40	1.20
14626254--14626319	26	2.6	25	79	13	73	46	1	1	50	1.20
14635042--14635153	54	2.1	54	87	0	161	17	17	25	39	1.92
14637379--14637429	16	3.1	16	74	2	57	47	3	1	47	1.32
14637416--14637448	10	3.0	11	86	13	50	48	0	0	51	1.00
14638580--14638620	22	1.9	21	85	5	55	41	0	2	56	1.13
14644299--14644379	26	3.1	26	78	0	81	19	18	16	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14645689--14645768	32	2.5	33	86	10	103	42	0	3	53	1.18
14646512--14646561	18	2.8	18	84	9	66	46	0	0	54	1.00
14648002--14648127	64	2.0	64	96	3	236	46	14	1	38	1.54
14648027--14648126	31	3.2	30	68	16	85	50	12	2	36	1.51
14648588--14648682	11	9.1	11	72	16	60	51	2	1	45	1.20
14649099--14649156	24	2.3	26	79	11	66	50	3	34	12	1.57
14649767--14649821	27	2.0	28	82	3	67	50	0	3	45	1.19
14659481--14659519	12	3.2	12	81	0	51	43	0	0	56	0.99
14661412--14661438	13	2.1	13	100	0	54	70	7	0	22	1.12
14661720--14661757	20	1.9	20	89	10	60	60	5	2	31	1.33
14665065--14665136	34	2.0	36	89	10	112	30	8	12	48	1.70
14665405--14665436	2	17.0	2	87	12	50	46	0	0	53	1.00
14666974--14667031	26	2.3	26	90	3	91	50	0	1	48	1.11
14666982--14667143	17	10.1	17	67	23	57	47	0	1	50	1.16
14667036--14667103	19	3.7	20	70	21	60	52	0	1	45	1.09
14667116--14667266	3	50.0	3	69	21	50	41	1	0	57	1.07
14667135--14667258	12	10.2	12	68	26	75	42	1	0	55	1.09
14667116--14667263	15	9.4	15	71	19	90	41	1	0	57	1.07
14667106--14667258	53	2.7	58	74	17	160	43	1	0	55	1.08
14667132--14667210	29	2.7	29	74	18	74	41	2	0	55	1.13
14667018--14667269	55	4.8	52	71	15	148	44	1	0	53	1.13
14667063--14667280	52	4.0	54	67	17	139	45	1	0	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14671418--14671461	23	1.9	23	85	0	61	38	0	0	61	0.96
14680935--14680972	20	2.0	20	84	5	51	42	2	2	52	1.29
14681578--14681609	13	2.5	13	95	5	57	43	0	0	56	0.99
14689415--14689464	9	5.7	9	76	11	50	22	0	4	74	0.99
14689702--14689741	21	1.9	21	85	10	55	80	0	5	15	0.88
14689918--14690010	49	1.9	48	84	2	123	60	5	8	25	1.48
14690412--14690467	10	5.5	10	78	18	62	80	0	1	17	0.80
14690411--14690467	13	4.3	13	74	10	53	80	0	1	17	0.79
14692279--14692339	28	2.3	26	85	5	77	67	0	4	27	1.11
14692495--14692535	22	1.9	21	85	14	57	58	17	0	24	1.38
14692516--14692551	15	2.4	16	86	13	58	52	22	0	25	1.47
14697591--14697643	7	8.0	7	79	8	58	84	0	3	11	0.73
14698168--14698228	25	2.4	25	84	10	72	21	16	4	57	1.58
14698803--14698860	22	2.7	22	84	10	75	84	0	12	3	0.74
14699767--14699904	54	2.5	53	82	6	161	30	15	18	34	1.93
14699924--14700017	22	4.2	22	80	10	93	32	23	23	20	1.97
14700264--14700434	94	1.8	94	82	2	218	31	23	11	33	1.90
14700367--14700557	33	5.8	33	76	7	165	32	19	12	35	1.89
14700370--14700557	66	2.8	65	83	6	218	33	19	12	34	1.90
14700754--14700807	22	2.5	22	81	0	72	33	18	9	38	1.83
14700913--14701088	37	4.8	37	69	12	101	15	15	15	52	1.75
14701341--14701443	37	2.8	37	78	0	116	18	20	11	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14701454--14701916	37	12.5	37	71	7	152	15	23	14	46	1.83
14701454--14701863	111	3.7	110	79	3	376	15	23	15	45	1.84
14701295--14701953	74	8.9	74	72	9	297	16	22	13	46	1.82
14701869--14701981	40	3.0	37	76	8	129	17	17	12	52	1.75
14703396--14703461	29	2.2	30	81	7	82	36	0	3	60	1.12
14703553--14703586	13	2.7	12	86	13	50	76	0	0	23	0.79
14703655--14703685	14	2.3	13	94	5	53	64	0	3	32	1.09
14703713--14703746	12	2.8	12	95	0	59	64	0	0	35	0.94
14709558--14709608	24	2.0	25	81	7	59	39	17	7	35	1.79
14720539--14720586	13	3.5	13	82	5	60	47	4	0	47	1.21
14721432--14721474	13	3.2	13	87	6	59	44	0	0	55	0.99
14723019--14723049	2	15.5	2	93	0	53	48	0	0	51	1.00
14723451--14723525	33	2.3	33	97	0	141	18	12	26	42	1.85
14725365--14725408	17	2.5	17	81	3	52	43	0	0	56	0.99
14726163--14726217	12	4.3	13	84	6	60	43	0	1	54	1.10
14727294--14727327	18	1.9	18	94	5	61	41	0	0	58	0.98
14727325--14727368	19	2.2	20	88	4	63	47	0	0	52	1.00
14727506--14727575	36	1.9	36	94	0	122	17	24	15	42	1.88
14728042--14728083	21	2.0	21	90	0	66	38	42	4	14	1.66
14729181--14729432	10	24.8	10	66	12	57	53	6	1	37	1.37
14729229--14729284	8	7.0	8	77	22	64	64	3	0	32	1.11
14729228--14729272	21	2.1	21	95	0	81	71	2	0	26	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14729237--14729262	13	2.0	13	100	0	52	76	0	0	23	0.78
14729308--14729399	21	4.6	20	68	11	62	48	4	0	46	1.21
14729406--14729464	31	1.9	30	83	10	75	52	6	3	37	1.45
14729440--14729483	20	2.2	20	84	11	56	65	0	0	34	0.93
14729219--14729473	10	25.5	10	66	14	80	54	5	1	38	1.34
14729440--14729481	19	2.2	19	87	8	59	66	0	0	33	0.92
14729955--14730087	10	12.9	10	66	15	56	41	2	5	51	1.37
14729911--14729984	10	8.0	9	74	15	53	39	1	4	55	1.27
14730334--14730401	18	3.7	18	67	18	59	48	5	7	38	1.55
14730330--14730422	37	2.6	35	88	5	141	45	6	6	41	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129