genome.fa.s24.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  88  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14146973--14147121	3	51.0	3	79	10	139	31	1	5	61	1.26
14147924--14147989	13	4.8	14	77	14	57	16	4	4	74	1.16
14149142--14149335	84	2.3	84	93	0	325	30	15	9	44	1.79
14149267--14149403	68	2.0	68	95	0	247	32	16	8	43	1.76
14149183--14149487	152	2.0	152	92	0	511	29	15	9	45	1.78
14149335--14149547	84	2.5	83	89	1	300	26	15	10	46	1.79
14150070--14150117	17	2.7	18	87	6	62	0	18	2	79	0.84
14151788--14151824	3	12.3	3	100	0	74	64	0	0	35	0.94
14153327--14153491	16	10.2	16	71	10	113	44	35	0	18	1.55
14153327--14153533	33	6.4	32	69	11	136	44	35	0	19	1.55
14159907--14159944	19	2.0	19	89	0	58	86	2	5	5	0.76
14161247--14161914	33	20.5	33	82	5	627	29	21	15	33	1.94
14162454--14162773	122	2.6	121	91	2	516	34	16	14	34	1.90
14162750--14162971	111	2.0	111	89	3	340	21	20	19	38	1.93
14162861--14163142	88	3.2	88	88	1	413	21	20	18	39	1.93
14163125--14163188	23	2.8	23	71	2	58	29	23	15	31	1.95
14163044--14163285	133	1.8	132	81	3	306	24	21	16	36	1.94
14163524--14163577	21	2.7	20	75	13	56	59	0	0	40	0.98
14165044--14165242	16	12.3	16	74	5	159	45	33	0	20	1.55
14165040--14165241	112	1.8	112	91	0	332	46	33	0	19	1.54
14165143--14165266	33	3.8	32	77	12	126	46	32	0	20	1.51
14169999--14170062	26	2.5	25	82	5	74	54	4	4	35	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14170108--14170150	21	2.2	18	84	12	50	55	6	0	37	1.27
14171928--14171957	2	15.0	2	92	0	51	53	0	0	46	1.00
14172630--14172660	4	7.8	4	100	0	62	51	22	0	25	1.48
14179035--14179078	1	44.0	1	81	0	52	90	2	4	2	0.58
14179033--14179078	20	2.3	20	88	3	67	89	2	4	4	0.66
14179036--14179070	18	1.9	18	94	0	61	91	2	2	2	0.56
14180372--14180976	33	18.5	33	85	3	701	29	21	15	33	1.94
14181514--14181840	122	2.7	120	90	3	503	34	16	14	34	1.89
14181816--14181877	22	2.8	22	87	4	90	29	27	19	24	1.98
14181838--14182077	111	2.2	111	86	4	333	22	20	18	37	1.94
14181965--14182243	88	3.2	88	88	2	409	21	20	18	39	1.93
14182620--14182670	19	2.7	18	82	11	57	54	0	0	45	0.99
14184064--14184274	32	6.8	32	69	16	140	46	33	0	18	1.53
14184086--14184267	16	10.9	15	67	20	78	47	34	0	18	1.53
14184174--14184297	33	3.8	33	77	6	126	47	33	0	19	1.50
14189025--14189088	26	2.5	24	78	14	65	54	4	4	35	1.42
14189134--14189176	21	2.2	18	84	12	50	55	6	0	37	1.27
14189743--14189925	94	1.9	94	87	2	267	29	12	16	42	1.84
14190088--14190114	2	13.5	2	100	0	54	51	0	0	48	1.00
14191060--14191107	23	2.0	23	88	8	69	39	8	8	43	1.65
14191662--14191688	4	6.8	4	100	0	54	51	22	0	25	1.48
14193244--14193278	2	17.5	2	87	0	52	45	0	5	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14199685--14199719	17	2.0	17	88	5	52	60	0	2	37	1.12
14199816--14199861	19	2.3	20	96	3	85	60	0	0	39	0.97
14201389--14201446	27	2.1	28	81	15	68	43	1	6	48	1.40
14205553--14205602	15	3.1	15	76	20	55	50	0	2	48	1.12
14206812--14206845	17	1.9	18	94	5	61	35	8	5	50	1.58
14207147--14207177	2	15.5	2	93	0	53	45	0	0	54	0.99
14207878--14207948	19	3.8	18	74	17	65	49	0	0	50	1.00
14207891--14207943	27	2.0	27	85	7	72	52	0	0	47	1.00
14207930--14208037	8	13.5	8	65	14	53	48	0	4	46	1.29
14207974--14208006	17	1.9	17	93	0	57	51	0	9	39	1.34
14211362--14211416	27	2.0	27	89	0	83	38	18	7	36	1.78
14212577--14212627	25	2.0	25	96	0	93	37	19	13	29	1.90
14219434--14219458	11	2.3	11	100	0	50	16	44	0	40	1.47
14219750--14219852	52	2.0	52	92	0	170	45	8	17	28	1.78
14222134--14222169	18	1.9	19	88	5	56	50	0	2	47	1.15
14222248--14222289	22	1.9	22	85	0	57	73	2	19	4	1.12
14229938--14229985	21	2.3	21	78	7	53	35	0	0	64	0.94
14229972--14230021	17	2.7	18	81	12	66	50	0	0	50	1.00
14229973--14230021	19	2.7	17	80	20	55	51	0	0	48	1.00
14230108--14230134	14	1.9	14	100	0	54	33	7	22	37	1.82
14233689--14233713	12	2.1	12	100	0	50	36	8	0	56	1.29
14233673--14233702	8	3.8	8	100	0	60	36	10	0	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14233714--14233749	18	2.0	18	94	0	63	63	0	0	36	0.94
14239385--14239445	17	3.4	17	77	16	68	39	1	4	54	1.32
14239379--14239447	21	3.5	21	80	15	101	40	1	4	53	1.30
14242049--14242078	14	2.1	15	93	6	53	40	0	0	60	0.97
14242127--14242160	2	17.0	2	100	0	68	50	0	0	50	1.00
14241934--14242152	106	2.1	106	84	3	280	31	12	9	47	1.72
14242682--14242739	21	2.6	24	73	18	61	53	1	0	44	1.10
14242850--14242884	13	2.7	13	86	0	52	48	2	0	48	1.16
14243865--14243922	26	2.2	26	84	9	73	36	6	0	56	1.26
14244716--14245517	396	2.0	398	85	4	1098	28	21	5	43	1.75
14245900--14245941	18	2.3	19	87	4	59	30	0	4	64	1.14
14253756--14253786	3	10.3	3	92	0	53	0	0	64	35	0.94
14254441--14254467	2	13.5	2	100	0	54	48	0	0	51	1.00
14256375--14256399	2	12.5	2	100	0	50	52	0	48	0	1.00
14256837--14256879	20	2.2	20	91	0	68	37	6	4	51	1.50
14257303--14257348	24	1.9	24	82	8	58	54	0	6	39	1.26
14257407--14257436	12	2.5	12	94	0	51	86	3	10	0	0.67
14257497--14257528	17	1.9	17	93	6	57	50	0	0	50	1.00
14258387--14258416	14	2.1	14	93	0	51	33	3	0	63	1.11
14259757--14259784	2	14.0	2	100	0	56	50	0	0	50	1.00
14261326--14261350	11	2.3	11	100	0	50	48	16	16	20	1.82
14261848--14261947	41	2.4	41	95	3	175	77	6	10	7	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14261873--14261922	18	2.9	16	77	13	55	80	8	8	4	1.03
14261847--14261945	21	4.8	20	71	10	74	78	6	8	7	1.08
14262992--14263039	21	2.3	21	85	7	62	56	6	10	27	1.57
14263349--14263924	210	2.8	205	76	11	450	43	3	17	35	1.65
14264514--14264569	22	2.5	24	77	19	66	75	0	14	10	1.06
14264728--14264800	25	3.0	24	80	11	87	76	0	17	5	0.97
14264747--14264806	16	3.7	16	73	8	50	80	1	15	3	0.93
14264746--14264801	18	2.9	18	76	23	60	78	0	17	3	0.89
14265773--14265820	21	2.3	21	85	7	62	50	0	0	50	1.00
14266537--14267108	184	3.0	181	76	11	519	43	3	18	34	1.67
14267813--14267894	25	3.4	24	77	9	71	78	0	12	9	0.98
14267835--14267888	20	2.7	21	80	8	67	79	0	11	9	0.93
14267834--14267894	21	2.9	20	79	15	61	80	0	9	9	0.91
14268366--14268410	22	2.1	22	84	12	58	66	0	6	26	1.16
14268847--14268894	21	2.3	21	85	7	62	50	0	0	50	1.00
14268856--14268901	22	2.1	22	84	8	58	56	0	0	43	0.99
14269569--14270081	202	2.7	190	81	6	586	43	3	19	33	1.67
14272050--14272086	14	2.4	16	91	8	60	56	0	2	40	1.13
14272336--14272386	25	2.0	25	88	0	75	23	13	21	41	1.89
14272780--14272821	9	4.7	9	85	11	59	54	0	0	45	0.99
14272773--14272829	19	3.1	19	82	10	73	52	0	0	47	1.00
14272773--14272855	37	2.2	36	81	8	87	54	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14273545--14273903	180	2.1	175	86	9	506	41	5	2	50	1.36
14273885--14273921	17	2.2	17	90	0	56	40	8	2	48	1.47
14276914--14276971	28	2.0	29	80	9	66	24	5	0	70	1.07
14278579--14278659	30	2.7	28	78	17	83	46	2	1	49	1.23
14278648--14278683	7	5.0	7	93	6	63	72	0	0	27	0.85
14278648--14278683	15	2.5	15	95	4	65	72	0	0	27	0.85
14279242--14279296	13	4.2	13	77	9	58	21	0	1	76	0.88
14279241--14279306	22	2.7	24	80	19	75	21	0	1	77	0.85
14280000--14280035	13	2.6	15	87	12	51	69	2	0	27	1.02
14281384--14281408	13	1.9	13	100	0	50	40	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129