genome.fa.s24.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  40  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5396695--5396744	26	1.9	26	100	0	100	24	26	20	30	1.98
5397594--5397646	26	2.0	26	100	0	106	26	26	20	26	1.99
5399043--5400680	722	2.3	718	90	2	2570	26	24	23	25	2.00
5400783--5400835	26	2.0	26	92	0	88	30	26	18	24	1.98
5401665--5401717	26	2.0	26	92	0	88	28	24	20	26	1.99
5403533--5403588	25	2.3	25	84	3	69	30	21	19	28	1.98
5404433--5404485	26	2.0	26	92	0	88	30	26	18	24	1.98
5402132--5406981	902	5.4	898	86	3	6587	25	25	24	25	2.00
5405334--5405386	26	2.0	26	96	0	97	26	28	20	24	1.99
5406238--5406287	26	1.9	26	95	0	91	28	26	18	28	1.98
5407729--5407778	26	1.9	26	95	0	91	28	26	18	28	1.98
5407646--5409152	734	2.1	732	90	1	2385	26	24	22	26	2.00
5409359--5409411	26	2.0	26	92	0	88	30	26	16	26	1.97
5410258--5410310	26	2.0	26	92	0	88	26	22	20	30	1.98
5411162--5411213	26	2.0	26	100	0	104	26	26	19	26	1.99
5412217--5412269	26	2.0	26	92	0	88	26	22	20	30	1.98
5412689--5412741	26	2.0	26	85	0	70	52	15	9	22	1.70
5413122--5413174	26	2.0	26	92	0	88	30	26	16	26	1.97
5411341--5414677	905	3.7	900	87	3	4659	26	24	24	25	2.00
5414020--5414070	26	2.0	26	92	0	84	33	25	13	27	1.94
5416246--5416298	26	2.0	26	88	0	79	24	22	22	30	1.99
5417035--5417087	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5420493--5420545	26	2.0	26	88	0	79	30	24	16	28	1.97
5422249--5422301	26	2.0	26	92	0	88	26	22	20	30	1.98
5422453--5422492	13	3.2	13	74	25	50	22	15	30	32	1.94
5426287--5426339	26	2.0	26	96	0	97	26	24	20	28	1.99
5428077--5428127	26	2.0	26	96	0	93	27	23	19	29	1.98
5424765--5429768	865	5.7	863	83	6	5305	26	24	23	25	2.00
5435060--5435112	26	2.0	26	96	0	97	24	28	20	26	1.99
5437690--5437738	26	1.9	26	95	4	91	26	28	16	28	1.97
5436825--5446247	901	10.5	900	86	3	12283	25	24	24	25	2.00
5440379--5440431	26	2.0	26	100	0	106	26	22	20	30	1.98
5449768--5451739	904	2.2	890	85	3	2607	26	23	23	25	2.00
5453826--5453865	13	3.2	13	74	25	50	22	15	30	32	1.94
5454550--5454602	26	2.0	26	88	0	79	26	20	22	30	1.98
5455455--5455507	26	2.0	26	92	0	88	26	26	18	28	1.98
5456354--5456408	26	2.1	26	96	0	101	25	27	20	27	1.99
5453850--5457148	904	3.7	900	89	2	4758	25	24	23	25	2.00
5457561--5461982	902	5.0	899	84	4	5674	26	25	23	25	2.00
5461904--5462058	76	2.0	76	90	2	240	12	47	21	18	1.82
5462238--5462293	26	2.2	26	96	0	103	30	25	17	26	1.97
5464427--5464479	26	2.0	26	92	0	88	26	22	20	30	1.98
5463562--5467026	902	3.9	895	87	2	4772	26	25	23	24	2.00
5466230--5466282	26	2.0	26	88	0	79	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5466940--5470401	907	3.9	876	84	5	4185	25	24	24	25	2.00
5469629--5469681	26	2.0	26	88	0	79	26	24	20	28	1.99
5471123--5472164	550	1.9	555	91	4	1717	27	21	23	27	1.99
5472497--5472549	26	2.0	26	85	7	72	26	24	22	26	2.00
5473406--5473458	26	2.0	26	89	7	81	28	26	18	26	1.98
5471620--5475987	905	4.8	901	87	3	5902	25	24	24	25	2.00
5474311--5474363	26	2.0	26	92	0	88	28	24	18	28	1.98
5475214--5475266	26	2.0	26	88	0	79	28	22	18	30	1.98
5476807--5476859	26	2.0	26	92	0	88	26	28	18	26	1.98
5479161--5479213	26	2.0	26	92	0	88	28	24	18	28	1.98
5481283--5481361	26	3.0	26	94	0	140	25	18	26	29	1.98
5482948--5483000	26	2.0	26	85	0	70	32	20	20	26	1.98
5483832--5483884	26	2.0	26	96	0	97	28	18	26	26	1.98
5484722--5484774	26	2.0	26	92	0	88	30	20	22	26	1.98
5485624--5485681	26	2.2	27	84	9	84	29	20	24	25	1.99
5483412--5486481	902	3.4	899	86	3	4234	25	24	24	25	2.00
5487781--5487833	26	2.0	26	88	0	79	28	15	26	30	1.96
5488675--5488725	26	2.0	26	100	0	102	27	15	27	29	1.96
5489574--5489626	26	2.0	26	92	0	88	26	16	28	28	1.97
5491373--5491423	26	2.0	26	96	0	93	27	19	29	23	1.98
5486920--5494081	905	8.0	900	85	4	8974	25	24	24	25	2.00
5493123--5493175	26	2.0	26	92	0	88	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5494021--5494072	25	2.0	26	88	3	79	30	19	21	28	1.97
5497187--5497237	26	2.0	26	88	0	75	29	17	27	25	1.98
5500055--5500107	26	2.0	26	88	0	79	28	16	24	30	1.97
5500945--5500997	26	2.0	26	100	0	106	26	20	26	26	1.99
5502715--5502765	26	2.0	26	88	0	75	31	17	21	29	1.96
5503618--5503670	26	2.0	26	92	0	88	30	18	26	24	1.98
5500014--5508143	883	9.1	899	83	5	9609	25	23	24	25	2.00
5504522--5504571	26	1.9	26	95	0	91	30	18	26	26	1.98
5505412--5505462	26	2.0	26	96	0	93	29	15	27	27	1.96
5507166--5507218	26	2.0	26	92	0	88	28	22	20	28	1.99
5508081--5508132	25	2.0	26	88	3	79	30	19	21	28	1.97
5510471--5510523	26	2.0	26	96	0	97	28	26	18	26	1.98
5511372--5511424	26	2.0	26	92	0	88	28	22	20	28	1.99
5511846--5511898	26	2.0	26	96	0	97	26	24	20	28	1.99
5514456--5514508	26	2.0	26	92	0	88	28	24	18	28	1.98
5515342--5515394	26	2.0	26	96	0	97	26	24	20	28	1.99
5513496--5520520	884	7.9	890	83	7	8307	25	24	24	25	2.00
5517120--5517172	26	2.0	26	88	0	79	28	26	18	26	1.98
5517253--5517285	11	3.0	11	95	0	57	18	24	36	21	1.95
5518030--5518082	26	2.0	26	96	0	97	26	26	22	24	2.00
5520559--5520611	26	2.0	26	88	0	79	30	22	18	28	1.98
5521442--5521494	26	2.0	26	88	0	79	26	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5522342--5522394	26	2.0	26	96	0	97	26	24	20	28	1.99
5520522--5523122	903	2.9	900	87	2	3674	26	24	23	25	2.00
5522376--5523863	720	2.1	722	88	1	2236	27	23	23	25	2.00
5523969--5524021	26	2.0	26	92	7	90	28	28	16	26	1.97
5523098--5525317	907	2.5	900	86	4	3125	25	24	24	25	2.00
5524876--5524928	26	2.0	26	88	0	79	28	24	20	26	1.99
5525637--5525689	26	2.0	26	85	0	70	26	26	20	26	1.99
5524559--5526085	768	2.0	764	84	4	2015	23	25	25	25	2.00
5526537--5526589	26	2.0	26	85	0	70	26	24	20	28	1.99
5526606--5529930	867	3.8	870	87	4	4502	25	24	24	25	2.00
5529170--5529222	26	2.0	26	92	0	88	26	22	20	30	1.98
5531530--5531582	26	2.0	26	100	0	106	26	26	20	26	1.99
5529979--5534158	899	4.7	899	83	4	5221	26	24	23	25	2.00
5533307--5533359	26	2.0	26	96	0	97	28	26	18	26	1.98
5535399--5537894	884	2.8	883	85	4	3131	25	25	24	25	2.00
5537582--5537636	26	2.1	26	93	0	92	27	23	21	27	1.99
5538692--5538744	26	2.0	26	100	0	106	26	26	20	26	1.99
5539341--5539393	26	2.0	26	88	0	79	30	26	16	26	1.97
5541099--5542431	661	2.0	663	87	2	1941	29	22	21	26	1.99
5542024--5543333	654	2.0	657	86	3	1818	28	24	21	25	1.99
5543304--5543356	26	2.0	26	96	0	97	28	24	20	26	1.99
5542677--5546677	921	4.5	884	81	8	4344	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5545079--5545150	26	2.8	26	95	0	135	27	26	18	27	1.98
5546000--5546052	26	2.0	26	96	0	97	26	24	20	28	1.99
5548934--5549286	176	2.0	177	91	1	566	26	23	19	31	1.98
5554345--5554700	176	2.0	177	90	1	563	26	23	19	30	1.98
5556036--5556087	26	2.0	26	92	0	86	30	26	15	26	1.96
5556932--5556984	26	2.0	26	88	0	79	28	24	16	30	1.97
5555172--5561295	896	6.9	903	85	4	8052	25	24	24	25	2.00
5557824--5557874	26	2.0	26	92	0	84	19	31	19	29	1.97
5564586--5564638	26	2.0	26	85	0	70	30	22	18	28	1.98
5563659--5565278	887	1.8	893	86	3	2389	27	23	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129