genome.fa.s24.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  3  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419775--419801	6	4.5	6	100	0	54	85	0	14	0	0.61
429085--429161	26	2.9	27	76	9	77	7	29	10	51	1.64
429693--429963	143	1.9	144	82	7	345	39	10	14	35	1.81
432690--432751	20	2.9	22	79	16	76	40	4	0	54	1.22
432715--432800	30	2.9	30	82	5	104	40	4	2	52	1.35
434518--434588	35	2.0	35	81	5	81	60	4	1	33	1.25
434553--434594	12	3.4	12	90	9	59	69	4	0	26	1.08
435423--435477	27	2.1	26	82	3	65	34	5	0	60	1.20
435818--435876	28	2.1	28	84	6	75	50	1	3	44	1.28
439358--439395	2	19.0	2	100	0	76	50	0	0	50	1.00
441151--441225	39	1.9	39	94	0	132	21	16	16	46	1.83
441167--441227	21	3.0	21	65	34	53	21	14	13	50	1.76
441289--441379	39	2.4	39	80	12	93	43	0	0	56	0.99
441347--441423	23	3.1	23	82	12	91	46	1	0	51	1.09
441379--441470	37	2.5	37	83	0	121	53	3	1	42	1.24
441406--441436	14	2.3	14	94	5	55	48	6	0	45	1.28
443511--443541	11	2.8	11	100	0	62	51	29	0	19	1.47
443876--443910	7	5.3	7	93	6	56	85	0	0	14	0.59
443876--443910	6	5.5	6	96	3	52	85	0	0	14	0.59
443876--443910	13	2.7	13	83	16	54	85	0	0	14	0.59
446403--446522	19	6.2	19	78	7	118	53	9	5	31	1.56
446403--446502	38	2.6	38	81	7	130	54	9	5	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447685--447757	18	4.1	18	78	1	67	64	8	1	26	1.30
448027--448292	42	6.1	42	78	12	218	44	17	10	27	1.82
448007--448291	87	3.3	86	80	5	331	43	16	11	27	1.83
454928--454973	22	2.0	24	87	12	69	67	4	4	23	1.27
456176--456227	22	2.4	22	77	6	61	65	5	13	15	1.44
459632--459700	20	3.6	20	69	23	58	24	14	14	46	1.82
459653--459727	27	2.9	27	68	27	65	24	14	14	46	1.82
468161--468192	16	2.1	16	94	5	57	25	0	0	75	0.81
477548--477606	3	19.7	3	100	0	118	66	0	0	33	0.92
478313--478360	25	2.0	25	83	4	62	35	4	12	47	1.60
485595--485689	41	2.3	40	81	12	104	18	3	5	72	1.17
485721--485784	17	3.8	16	76	17	58	75	1	3	20	1.03
485721--485764	18	2.5	17	82	13	54	75	2	4	18	1.09
485746--485795	21	2.3	23	80	16	61	74	0	4	22	0.99
485754--485796	22	2.0	21	86	13	61	76	0	2	20	0.89
485756--485796	17	2.4	17	88	8	57	75	0	2	21	0.92
486634--486678	3	15.3	3	90	4	74	68	2	0	28	1.01
486637--486676	20	2.0	20	95	0	71	70	2	0	27	1.01
486632--486678	23	2.0	23	95	0	85	70	2	0	27	0.99
486694--487700	341	3.0	333	80	7	998	33	20	15	30	1.93
487707--487769	5	11.8	5	81	18	74	58	3	0	38	1.14
487858--492048	130	32.5	130	74	7	2801	39	16	8	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487833--492037	776	5.4	769	78	6	3649	39	16	8	35	1.79
488209--492029	904	4.2	892	76	7	2457	39	16	8	35	1.79
490566--490597	15	2.1	15	94	0	55	46	3	0	50	1.17
487839--492048	259	16.3	257	75	7	2855	39	16	8	35	1.79
492169--493226	130	8.2	128	74	7	710	39	17	7	34	1.79
493239--493496	129	2.0	131	81	2	306	37	18	6	37	1.78
493758--493966	114	1.8	114	85	2	294	39	12	10	37	1.78
493989--494105	52	2.2	53	75	10	123	38	21	3	36	1.70
493873--494212	182	1.9	183	83	5	447	37	17	8	36	1.81
494047--494889	130	6.6	129	72	13	503	38	17	7	36	1.79
494049--494872	257	3.2	250	74	10	702	38	17	7	36	1.79
494895--495281	131	3.0	130	81	6	394	37	16	6	39	1.75
495442--495894	129	3.5	129	77	4	371	39	18	7	33	1.80
495459--496025	129	4.4	128	75	6	326	39	17	8	34	1.80
494913--496613	822	2.1	824	78	3	1728	39	17	7	35	1.79
496307--496673	129	2.8	128	76	11	343	40	15	7	36	1.76
496564--496856	158	1.9	157	82	5	367	38	14	8	38	1.76
496720--497671	130	7.3	128	75	7	620	38	15	9	36	1.80
496802--497671	260	3.4	256	77	5	815	38	16	9	35	1.81
499615--499941	129	2.6	128	81	9	306	39	18	4	37	1.72
500086--501159	130	8.3	129	74	6	728	38	18	7	35	1.79
501215--504160	130	22.9	128	75	7	2084	38	17	8	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505318--505689	130	2.9	127	71	7	318	38	15	9	36	1.80
505773--505814	2	21.5	2	81	13	52	47	0	4	47	1.23
505854--507008	129	9.0	129	78	5	987	38	17	8	36	1.79
506162--507013	386	2.2	385	83	3	1091	39	18	7	34	1.79
507825--508914	130	8.5	126	73	9	616	39	17	8	34	1.80
507825--508914	260	4.2	255	74	8	885	39	17	8	34	1.80
508333--508914	129	4.5	130	76	5	457	40	18	7	34	1.78
507725--508821	509	2.2	506	82	4	1329	39	17	8	34	1.81
509022--510236	129	9.4	129	76	8	947	38	18	7	35	1.80
508987--510243	259	4.9	257	76	7	823	38	18	7	35	1.79
510353--510737	130	3.0	127	79	5	391	38	16	6	38	1.75
510900--511347	131	3.5	126	82	7	480	40	17	8	33	1.80
511456--511705	130	1.9	130	83	4	326	40	15	6	37	1.73
542480--542579	45	2.2	45	83	0	119	25	17	32	26	1.97
545979--546024	19	2.5	19	83	16	60	13	6	0	80	0.89
556182--556302	61	2.0	62	88	1	181	61	10	14	13	1.57
556286--556331	24	1.9	24	95	0	83	50	17	19	13	1.78
556288--556342	24	2.2	24	83	6	65	50	14	21	12	1.76
557132--558955	233	7.8	231	78	5	1384	19	23	15	41	1.89
557141--558998	351	5.3	348	80	4	1589	18	23	15	41	1.89
557217--558881	584	2.8	583	80	5	1695	19	24	15	41	1.89
557141--559005	117	15.9	117	77	6	1247	18	23	15	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564879--564935	21	2.7	21	91	0	87	8	29	35	26	1.87
570504--570937	216	2.0	216	95	0	789	32	16	25	25	1.96
574722--574775	26	2.1	26	89	0	81	33	27	11	27	1.91
578370--578416	21	2.2	21	100	0	94	23	31	17	27	1.96
585493--585562	26	2.7	25	79	14	88	22	40	10	27	1.86
593649--593741	35	2.6	36	77	3	98	27	29	17	25	1.97
631942--632028	44	2.0	45	83	2	113	36	26	19	17	1.94
642671--642759	45	2.0	45	84	0	115	24	12	32	30	1.92
661619--661657	19	2.0	19	85	5	51	43	12	2	41	1.56
676152--676225	23	3.2	23	76	0	76	24	36	21	17	1.95
681747--681793	24	2.0	24	91	0	76	25	31	17	25	1.97
693803--693878	37	2.0	38	87	2	109	30	6	28	34	1.83
724768--724951	79	2.3	79	91	2	309	31	15	26	27	1.95
726367--726438	22	3.2	24	86	11	91	72	4	1	22	1.10
726383--726454	13	5.4	13	82	12	69	75	4	1	19	1.05
726367--726456	22	3.9	22	81	14	85	74	3	2	20	1.07
734720--734791	37	1.9	37	85	0	99	36	18	18	27	1.94
746311--746369	26	2.2	28	84	6	77	62	6	3	27	1.36
760168--760331	85	1.9	86	81	6	199	25	14	27	33	1.94
762789--762954	90	1.8	90	96	0	305	24	18	31	25	1.97
771338--771392	26	2.1	27	93	3	94	23	27	18	30	1.97
770988--773855	904	3.2	899	89	2	4261	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773150--773202	26	2.0	26	96	0	97	26	24	20	28	1.99
773882--773956	26	2.9	26	97	0	141	26	28	18	26	1.98
773150--774611	756	1.9	758	90	2	2359	27	23	23	26	2.00
775682--775734	26	2.0	26	100	0	106	30	26	16	26	1.97
776583--776635	26	2.0	26	96	0	97	26	24	20	28	1.99
777470--777548	26	3.0	26	94	0	131	27	24	21	26	1.99
774808--782552	903	8.6	903	85	4	9625	25	24	24	25	2.00
780209--780287	26	3.0	25	92	3	122	29	27	17	25	1.98
785116--785168	26	2.0	26	88	0	79	26	24	18	30	1.98
786005--786057	26	2.0	26	92	0	88	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129