genome.fa.s24.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  98  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16244802--16244906	13	7.5	14	76	9	81	46	0	0	52	1.07
16244830--16244918	5	19.0	5	73	15	66	52	1	0	46	1.07
16244819--16244947	26	5.3	25	72	18	85	49	0	0	48	1.12
16244787--16244979	72	2.7	71	75	13	187	49	0	0	49	1.08
16249569--16249597	2	14.5	2	100	0	58	51	0	0	48	1.00
16252531--16252764	36	6.4	36	82	2	207	53	13	17	16	1.73
16252531--16252767	73	3.3	71	80	2	258	53	13	17	16	1.73
16252711--16252910	108	1.8	110	83	2	269	56	10	15	18	1.67
16252819--16252951	39	3.5	38	83	5	155	56	6	16	21	1.61
16252667--16252973	36	8.3	38	75	7	172	53	11	16	19	1.72
16252977--16253203	73	3.1	73	78	2	181	53	11	17	17	1.72
16253150--16253275	36	3.5	36	84	6	166	57	9	13	19	1.64
16254486--16254733	127	2.0	126	83	5	313	22	16	11	48	1.79
16261968--16262034	21	3.2	21	64	8	55	17	19	5	56	1.61
16261964--16262047	42	2.0	42	97	0	159	19	17	4	58	1.56
16264575--16264606	4	8.0	4	92	0	55	75	3	0	21	0.95
16265865--16265895	2	15.5	2	100	0	62	51	48	0	0	1.00
16269172--16269222	24	2.1	24	82	13	61	21	3	3	70	1.20
16269253--16269315	22	2.9	22	79	6	74	42	22	4	30	1.74
16269283--16269351	31	2.2	31	86	0	93	44	13	7	34	1.71
16271786--16271827	3	14.0	3	100	0	84	33	0	0	66	0.92
16272879--16272912	18	1.9	17	94	5	59	73	0	5	20	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16273208--16273254	3	15.7	3	100	0	94	68	0	0	31	0.90
16281352--16282028	43	15.9	43	73	5	372	33	14	12	38	1.84
16281418--16281900	42	11.4	42	73	12	274	33	14	13	39	1.85
16281375--16282029	85	7.7	85	76	7	461	33	14	12	39	1.84
16281361--16281902	127	4.3	126	77	7	438	33	14	12	39	1.84
16283245--16283318	7	10.7	7	72	13	55	18	1	1	78	0.90
16283244--16283318	8	8.6	8	70	21	53	18	1	1	78	0.89
16283253--16283318	28	2.4	26	85	9	87	19	1	1	77	0.93
16283489--16283542	22	2.3	22	81	9	54	72	3	3	20	1.16
16283513--16283561	19	2.7	17	80	20	55	71	2	6	20	1.18
16283513--16283559	18	2.6	18	83	12	60	72	2	6	19	1.17
16283821--16283885	3	21.3	3	96	3	121	66	1	0	32	1.01
16285762--16285805	21	2.1	21	82	0	52	11	15	0	72	1.11
16285769--16285810	21	1.9	22	85	9	59	14	11	0	73	1.09
16285768--16285815	22	2.4	19	77	16	51	12	12	0	75	1.06
16290204--16290239	18	2.0	19	89	10	58	63	5	5	25	1.38
16291032--16291081	16	3.3	15	77	11	57	28	2	0	70	0.99
16294291--16294780	242	2.0	241	86	1	687	42	7	11	38	1.71
16309717--16309761	17	2.7	18	80	16	53	53	2	0	44	1.13
16312492--16312529	20	1.9	20	88	0	58	73	10	5	10	1.23
16313128--16313167	21	1.9	21	85	10	55	35	0	5	60	1.19
16313429--16313497	30	2.3	30	80	12	79	60	2	11	24	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16314604--16314665	28	2.2	28	85	2	81	29	12	30	27	1.93
16324273--16324444	88	2.0	87	83	1	218	41	9	15	32	1.80
16325386--16325491	52	2.0	52	85	0	140	42	6	19	31	1.77
16327512--16327570	18	3.4	18	73	17	63	42	5	10	42	1.60
16329796--16329836	22	2.0	22	90	9	68	46	2	12	39	1.54
16329796--16329838	20	2.2	19	84	16	52	48	2	11	37	1.52
16330249--16330300	26	2.0	27	88	3	79	40	0	1	57	1.10
16330756--16330787	2	16.5	2	93	6	57	50	0	0	50	1.00
16330756--16330784	15	1.9	15	100	0	58	48	0	0	51	1.00
16332616--16332643	2	14.0	2	100	0	56	50	0	0	50	1.00
16333429--16333461	3	11.0	3	93	0	57	66	3	0	30	1.06
16334331--16334393	32	2.0	32	87	0	90	47	3	4	44	1.40
16334629--16334669	21	2.0	20	86	9	57	46	0	9	43	1.36
16335853--16335907	26	2.1	26	93	0	92	36	30	9	23	1.86
16336944--16336973	13	2.3	13	100	0	60	43	0	6	50	1.28
16337972--16338025	20	2.7	19	80	11	56	12	7	1	77	1.05
16338107--16338144	3	12.7	3	94	0	67	65	0	2	31	1.06
16348682--16348806	51	2.4	54	88	8	177	53	13	20	12	1.72
16348720--16348828	51	2.2	50	85	6	148	60	12	16	10	1.58
16350626--16350749	3	41.3	3	85	3	151	31	5	1	61	1.29
16351001--16351044	18	2.3	20	77	18	58	25	2	31	40	1.68
16351752--16351777	3	8.7	3	100	0	52	34	0	30	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16352379--16352418	3	13.7	3	94	5	73	67	0	0	32	0.91
16351564--16352820	625	2.0	638	87	4	1841	38	11	9	40	1.74
16354540--16354564	13	1.9	13	100	0	50	32	8	4	56	1.47
16363876--16363924	20	2.4	20	77	12	55	71	0	2	26	0.97
16365427--16365468	11	3.8	11	87	0	57	2	33	0	64	1.07
16365426--16365468	22	2.0	22	90	0	68	2	34	0	62	1.08
16375798--16375822	11	2.3	11	100	0	50	52	8	0	40	1.31
16376248--16376277	11	2.7	11	89	0	51	0	3	6	90	0.56
16376302--16376790	43	11.1	43	78	5	349	43	17	13	25	1.86
16376302--16376790	86	5.6	86	80	4	417	43	17	13	25	1.86
16376302--16376788	129	3.7	130	79	5	460	43	17	13	25	1.86
16376854--16376883	15	2.0	15	93	0	51	43	6	13	36	1.70
16377085--16377127	21	2.0	21	90	0	68	34	18	11	34	1.87
16377088--16377133	21	2.2	21	84	0	56	36	23	10	28	1.89
16377505--16377597	22	4.3	22	91	1	143	40	19	7	32	1.79
16378585--16378653	27	2.6	27	82	11	79	7	14	1	76	1.06
16378613--16378705	9	9.7	9	76	19	82	8	15	0	76	1.01
16378615--16378705	19	4.7	19	75	19	82	8	15	0	75	1.03
16378620--16378695	31	2.5	30	81	12	68	7	14	0	77	0.98
16378608--16378695	43	2.2	39	84	12	106	9	13	0	77	0.99
16378616--16378718	50	2.0	51	81	5	120	8	17	0	73	1.07
16378638--16378695	11	5.4	11	82	12	66	8	13	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16378651--16378714	18	3.3	18	83	12	56	10	17	0	71	1.13
16383394--16383448	8	6.9	8	87	10	60	16	0	5	78	0.93
16383393--16383425	9	3.7	9	100	0	66	9	0	9	81	0.87
16383392--16383433	18	2.3	18	87	0	66	11	0	7	80	0.88
16383421--16383450	14	2.1	14	100	0	60	20	0	0	80	0.72
16386008--16386048	19	2.1	19	86	4	55	24	9	17	48	1.76
16386115--16386143	12	2.3	13	94	5	51	20	0	13	65	1.26
16386399--16386468	13	5.8	12	78	17	65	17	2	2	77	1.02
16388136--16388171	16	2.2	16	95	0	63	22	0	22	55	1.44
16388461--16388505	24	1.9	23	86	4	63	44	15	0	40	1.47
16389671--16389964	162	1.8	161	88	3	448	32	9	15	41	1.81
16392506--16392562	16	3.8	16	71	15	50	42	0	0	57	0.98
16393305--16393364	3	20.0	3	100	0	120	33	0	0	66	0.92
16393701--16393860	42	3.8	42	68	18	100	39	10	11	38	1.76
16395525--16395555	2	16.0	2	93	6	55	48	0	0	51	1.00
16397806--16397841	2	18.5	2	88	5	56	52	0	0	47	1.00
16407278--16407303	13	2.0	13	100	0	52	38	0	7	53	1.30
16407561--16407650	46	2.0	46	100	0	180	38	15	17	27	1.90
16409354--16409390	19	1.9	19	88	0	56	27	0	10	62	1.28
16421546--16421970	60	6.9	58	78	14	419	34	12	7	45	1.69
16421726--16421866	72	2.0	71	94	4	250	36	11	7	45	1.67
16421666--16421925	131	2.0	129	85	5	355	35	11	8	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16421943--16421971	15	1.9	15	100	0	58	34	0	10	55	1.34
16421989--16422060	5	13.8	5	74	21	60	77	1	6	13	1.03
16421985--16422010	13	2.0	13	100	0	52	84	0	0	15	0.62
16421985--16422063	33	2.4	31	82	16	88	77	1	7	13	1.05
16421985--16422053	11	6.4	10	74	15	50	78	1	5	14	1.01
16421986--16422061	17	4.8	16	81	12	79	77	1	7	13	1.04
16422002--16422053	11	4.7	11	79	15	54	76	1	7	13	1.07
16422922--16422964	13	3.1	14	90	6	61	74	4	4	16	1.16
16423166--16423203	17	2.3	17	90	4	60	84	0	7	7	0.79
16423097--16423190	38	2.5	37	79	8	102	74	0	5	20	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129