genome.fa.s24.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  47  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6561365--6561451	45	1.9	45	85	0	120	28	28	18	24	1.98
6563189--6563257	28	2.5	28	90	0	102	31	10	24	33	1.89
6565204--6565328	45	2.8	44	80	4	135	34	20	28	16	1.95
6565412--6565445	12	2.8	12	100	0	68	23	14	44	17	1.86
6574381--6574530	75	2.0	75	92	0	246	30	33	15	21	1.94
6575187--6575239	22	2.4	22	93	0	88	33	39	13	13	1.83
6578599--6578713	45	2.5	45	85	4	151	24	33	17	24	1.96
6585234--6585283	18	2.7	18	87	3	64	30	14	34	22	1.93
6592574--6592617	22	2.0	22	90	0	70	31	11	11	45	1.76
6592760--6592803	23	2.0	23	90	4	72	15	11	9	63	1.51
6596218--6596261	22	2.0	22	86	0	61	31	11	9	47	1.71
6608764--6608825	24	2.5	25	84	7	81	53	17	11	17	1.72
6609272--6609352	40	2.0	41	85	4	110	23	17	4	54	1.62
6610695--6610841	3	49.0	3	86	2	170	38	0	25	34	1.61
6610843--6610870	3	9.3	3	100	0	56	64	0	0	35	0.94
6612871--6612927	14	4.2	14	78	14	57	77	1	17	3	1.00
6612867--6612928	16	3.9	16	77	14	58	75	1	19	3	1.02
6614039--6614082	23	1.9	23	81	9	54	52	9	15	22	1.71
6614148--6614536	164	2.4	158	83	5	465	35	17	11	34	1.87
6614163--6614612	81	5.6	81	71	9	229	37	17	10	34	1.84
6614420--6614678	121	2.1	121	85	2	342	38	15	10	34	1.83
6614140--6614996	40	21.2	40	68	11	223	36	15	11	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6614544--6614845	81	3.7	82	73	8	267	37	13	11	37	1.82
6614700--6614963	122	2.2	121	83	4	325	38	13	12	35	1.83
6615735--6615798	30	2.1	30	85	0	83	67	6	3	23	1.28
6618902--6618931	8	3.6	8	95	4	51	13	0	3	83	0.77
6619288--6619320	16	2.1	16	88	11	50	12	0	6	81	0.85
6619287--6619324	17	2.2	18	86	13	53	10	0	7	81	0.87
6622853--6622887	18	1.9	18	88	11	54	85	2	5	5	0.81
6625877--6625916	21	1.9	21	94	0	71	30	12	17	40	1.86
6628481--6628519	15	2.6	16	84	15	57	23	0	0	76	0.78
6631764--6631789	13	2.0	13	100	0	52	30	0	15	53	1.42
6642507--6642656	13	11.4	13	76	6	115	46	23	6	24	1.74
6642507--6642656	26	5.7	26	78	7	142	46	23	6	24	1.74
6642631--6642840	92	2.2	92	94	2	366	41	27	11	19	1.85
6643471--6643513	19	2.3	19	83	0	50	37	0	6	55	1.27
6646234--6646272	20	2.0	20	89	0	60	25	25	2	46	1.66
6649221--6649297	7	10.4	7	76	15	59	77	0	18	3	0.91
6649232--6649296	17	3.7	17	71	18	53	76	0	18	4	0.95
6649527--6649675	35	4.4	34	76	8	126	34	17	16	32	1.92
6649555--6649681	67	1.9	68	81	1	157	32	17	18	32	1.94
6649668--6649725	30	2.0	30	86	3	82	36	12	15	36	1.85
6649782--6650780	33	30.7	33	68	15	150	35	19	15	29	1.92
6649782--6649865	32	2.6	31	83	9	107	41	17	10	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6649782--6649912	35	3.9	34	78	5	108	38	21	11	28	1.88
6649882--6649967	29	3.0	29	79	3	84	25	20	18	34	1.96
6649944--6650591	33	19.7	34	67	19	163	35	18	16	29	1.93
6649944--6650086	68	2.1	67	80	14	152	37	15	15	31	1.89
6650396--6650587	101	1.9	99	84	10	257	35	16	16	31	1.91
6650195--6650784	33	17.9	34	69	15	251	35	19	15	29	1.93
6650959--6650999	13	3.1	13	92	3	64	80	14	4	0	0.87
6651274--6651304	12	2.5	12	94	5	53	67	0	0	32	0.91
6653080--6653120	21	2.0	20	85	4	55	53	4	0	41	1.22
6653169--6653216	3	16.0	3	95	0	87	64	0	2	33	1.05
6653333--6653475	13	10.9	13	84	4	153	48	20	5	25	1.70
6654752--6654812	19	3.3	18	72	17	61	16	3	37	42	1.64
6654799--6654879	7	11.4	7	73	2	63	19	2	30	46	1.63
6654798--6654844	15	3.1	15	84	9	69	17	0	31	51	1.46
6654875--6654921	17	2.8	16	79	17	51	23	4	25	46	1.70
6660303--6660372	35	2.0	35	82	0	86	34	10	18	37	1.84
6662108--6662133	9	2.9	9	100	0	52	0	11	30	57	1.34
6663548--6663627	25	3.2	25	82	3	81	40	33	6	20	1.77
6663564--6663629	12	5.3	12	72	13	53	43	33	6	16	1.73
6664256--6665922	371	4.5	370	85	2	2047	37	12	15	34	1.85
6664278--6665910	557	2.9	557	85	2	2096	37	12	15	34	1.85
6664278--6665934	186	8.9	186	86	1	1955	37	12	15	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6672209--6672246	19	2.0	19	100	0	76	26	21	26	26	1.99
6672395--6672438	21	2.1	21	82	0	52	43	9	29	18	1.80
6672866--6672932	21	3.2	21	83	12	77	47	5	1	44	1.36
6673124--6673210	34	2.6	34	77	0	102	34	17	14	33	1.91
6677696--6677737	18	2.4	17	85	14	59	2	28	0	69	1.01
6685234--6685339	33	3.3	31	77	11	90	66	5	1	26	1.25
6685267--6685329	29	2.3	27	84	10	76	65	1	0	33	1.03
6685265--6685343	30	2.7	29	86	4	95	67	2	1	29	1.12
6685810--6685853	15	2.9	15	80	16	54	43	2	2	52	1.26
6685923--6686329	158	2.6	158	86	1	582	32	16	22	27	1.96
6687409--6687435	14	1.9	14	100	0	54	66	0	11	22	1.22
6687686--6687788	32	3.1	32	82	10	127	33	0	13	52	1.41
6690743--6690805	27	2.2	29	81	16	69	50	1	11	36	1.47
6695410--6695442	15	2.3	15	89	5	50	36	0	0	63	0.95
6695712--6695745	7	4.9	7	85	0	50	50	0	0	50	1.00
6695705--6695745	21	2.0	21	90	9	66	53	0	0	46	1.00
6696190--6696222	17	1.9	17	88	11	50	57	0	3	39	1.14
6696257--6696527	94	2.8	93	72	13	228	52	5	3	39	1.40
6696524--6696806	96	2.9	95	79	10	272	51	3	4	40	1.38
6696524--6696806	98	2.9	95	74	12	263	51	3	4	40	1.38
6697730--6697804	28	2.8	27	67	16	66	40	2	1	56	1.22
6698168--6698476	152	2.1	148	79	7	340	48	3	5	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6701459--6701498	3	13.7	3	89	5	64	65	0	0	35	0.93
6702507--6702532	2	13.0	2	100	0	52	50	0	0	50	1.00
6705701--6705862	49	3.3	47	78	10	157	17	1	36	43	1.60
6705760--6705795	17	2.1	18	94	5	65	30	0	30	38	1.58
6705809--6705927	7	18.9	7	68	20	66	17	0	35	46	1.54
6705730--6705875	19	7.5	19	73	15	77	19	2	33	44	1.63
6705822--6705913	45	2.1	44	87	2	130	18	1	32	47	1.56
6705729--6705937	19	10.9	19	69	16	76	19	1	33	45	1.59
6705839--6705937	26	3.9	26	76	17	93	19	0	32	48	1.49
6705828--6705925	12	7.8	13	71	20	50	18	0	32	48	1.48
6707954--6708008	19	2.8	20	86	2	67	25	10	14	49	1.76
6708273--6708321	19	2.7	18	81	6	55	10	0	10	79	0.93
6708637--6708788	79	1.9	79	81	6	182	34	13	15	36	1.87
6713205--6713292	19	4.6	19	78	4	88	20	11	20	47	1.80
6713517--6713551	15	2.2	16	90	5	54	22	2	0	74	0.95
6713670--6713714	3	15.3	3	82	17	51	31	0	0	68	0.89
6713672--6713714	16	2.7	16	85	10	61	30	0	0	69	0.88
6714478--6714519	3	14.0	3	89	0	66	4	33	0	61	1.17
6714517--6714555	2	19.5	2	100	0	78	0	48	0	51	1.00
6716072--6716108	7	5.4	7	87	6	58	10	2	13	72	1.21
6716258--6716354	31	3.1	31	81	0	86	40	15	24	19	1.90
6716500--6716614	33	3.5	31	71	12	88	27	13	20	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6716437--6716758	65	5.0	65	76	8	201	28	13	20	37	1.91
6716417--6716761	32	10.7	32	73	8	207	28	13	20	36	1.91
6716437--6716758	130	2.5	130	79	5	321	28	13	20	37	1.91
6716929--6716978	22	2.3	22	78	0	55	32	18	18	32	1.94
6716964--6717010	22	2.1	22	88	7	69	23	12	25	38	1.90
6718007--6718078	30	2.5	30	84	15	98	4	22	1	72	1.10
6717995--6718071	39	1.9	39	82	12	95	3	19	2	74	1.10
6718007--6718085	28	2.8	27	83	11	79	5	21	1	72	1.11
6718544--6718583	17	2.4	17	84	12	55	0	15	5	80	0.88
6718672--6718716	22	2.0	22	95	0	81	55	2	17	24	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129