genome.fa.s24.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  45  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6008999--6009051	26	2.0	26	85	0	70	28	20	20	30	1.98
6002019--6019439	895	19.7	900	81	6	19077	25	24	24	25	2.00
6009894--6009945	26	2.0	26	81	7	61	25	23	19	32	1.97
6011689--6011741	26	2.0	26	92	0	88	28	24	18	28	1.98
6015168--6015220	26	2.0	26	88	0	79	26	20	22	30	1.98
6018665--6018715	26	2.0	26	92	0	84	25	21	23	29	1.99
6019392--6021958	877	2.9	870	85	5	3500	25	24	24	25	2.00
6023413--6023462	26	1.9	26	91	0	82	28	28	16	28	1.97
6022549--6025208	865	3.1	857	81	8	2865	25	24	23	25	2.00
6026190--6026242	26	2.0	26	96	0	97	26	24	20	28	1.99
6027092--6027144	26	2.0	26	85	7	72	32	20	16	30	1.95
6025316--6027784	901	2.7	900	87	3	3518	26	23	24	26	2.00
6027825--6027877	26	2.0	26	92	0	88	26	22	20	30	1.98
6028672--6028724	26	2.0	26	88	0	79	30	28	16	24	1.97
6027779--6029448	849	2.0	847	89	1	2592	26	24	23	25	2.00
6029868--6029920	26	2.0	26	100	0	106	26	26	20	26	1.99
6030764--6030814	26	2.0	26	100	0	102	31	29	11	27	1.92
6031602--6031652	26	2.0	26	88	0	75	33	21	17	27	1.96
6030308--6031978	835	2.0	828	87	4	2376	25	25	24	24	2.00
6031576--6033113	745	2.1	742	88	2	2262	26	24	23	26	2.00
6035028--6035077	26	2.0	25	92	4	82	28	28	14	30	1.95
6034086--6036750	897	3.0	895	87	2	3759	26	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6035923--6035975	26	2.0	26	92	0	88	32	24	15	28	1.95
6035989--6037505	774	2.0	766	87	4	2210	27	22	23	26	2.00
6037302--6038303	492	2.0	499	82	4	1236	20	28	28	22	1.99
6038960--6039009	26	1.9	26	95	0	91	22	28	22	28	1.99
6039866--6039918	26	2.0	26	92	0	88	26	26	18	28	1.98
6040360--6045419	903	5.8	868	76	11	4625	25	25	24	25	2.00
6041584--6041633	26	1.9	26	91	0	82	32	22	14	32	1.93
6040742--6045419	864	5.3	851	77	10	3568	24	25	24	25	2.00
6043330--6043382	26	2.0	26	88	0	79	30	22	18	28	1.98
6045103--6045155	26	2.0	26	96	0	97	32	26	15	26	1.95
6046593--6046645	26	2.0	26	96	0	97	28	26	18	26	1.98
6045428--6047286	874	2.1	871	85	6	2460	25	25	23	25	2.00
6048194--6048246	26	2.0	26	92	0	88	30	24	20	24	1.99
6050265--6050317	26	2.0	26	88	0	79	28	22	18	30	1.98
6050392--6050420	14	2.1	14	100	0	58	31	41	20	6	1.79
6052057--6052109	26	2.0	26	88	0	79	30	22	18	28	1.98
6052948--6053000	26	2.0	26	89	7	81	32	26	15	26	1.95
6053780--6053829	26	1.9	26	87	0	73	26	24	18	32	1.97
6054511--6054563	26	2.0	26	96	0	97	30	26	15	28	1.96
6055392--6055444	26	2.0	26	88	0	79	28	26	18	26	1.98
6056217--6056269	26	2.0	26	92	0	88	26	22	20	30	1.98
6056964--6057013	26	1.9	26	91	0	82	28	24	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6056185--6059693	741	4.8	741	88	3	4792	26	24	23	26	2.00
6062029--6062081	26	2.0	26	92	0	88	28	18	24	28	1.98
6060704--6072942	902	13.8	903	83	6	14589	25	24	24	25	2.00
6064705--6064755	26	2.0	26	96	0	93	27	17	27	27	1.98
6066462--6066514	26	2.0	26	92	0	88	30	20	22	26	1.98
6067368--6067420	26	2.0	26	88	0	79	28	11	26	33	1.91
6070017--6070069	26	2.0	26	92	0	88	30	16	24	28	1.97
6070919--6070971	26	2.0	26	100	0	106	26	20	26	26	1.99
6071820--6071872	26	2.0	26	85	0	70	24	22	22	30	1.99
6073697--6075166	718	2.1	710	87	3	2076	26	23	23	26	2.00
6075987--6076039	26	2.0	26	89	7	81	30	22	20	26	1.98
6076893--6076943	26	2.0	26	88	0	75	33	19	21	25	1.97
6075328--6080366	900	5.8	890	85	6	6150	25	23	24	25	2.00
6079635--6082505	714	4.0	709	86	4	3713	26	23	24	26	2.00
6082479--6082531	26	2.0	26	88	0	79	24	18	28	28	1.98
6083381--6083432	26	2.0	26	92	0	86	28	17	25	28	1.97
6083763--6083815	26	2.0	26	89	7	81	26	15	28	30	1.96
6085736--6085788	26	2.0	26	100	0	106	26	20	26	26	1.99
6089723--6089775	26	2.0	26	92	0	88	26	26	20	26	1.99
6090704--6092788	721	2.9	712	87	4	2943	27	24	23	25	2.00
6092899--6092951	26	2.0	26	88	0	79	28	22	18	30	1.98
6093097--6093502	214	1.9	217	92	2	694	23	23	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6095450--6095502	26	2.0	26	92	0	88	30	24	20	24	1.99
6093887--6095940	902	2.3	879	87	3	2846	26	24	23	26	2.00
6096201--6096253	26	2.0	26	92	0	88	26	22	22	28	1.99
6097080--6097132	26	2.0	26	92	7	90	30	26	16	26	1.97
6097979--6098030	26	2.0	26	96	0	95	25	26	19	28	1.98
6098874--6098926	26	2.0	26	96	0	97	24	26	20	28	1.99
6095950--6101614	903	6.3	901	84	4	6878	25	24	24	25	2.00
6100522--6100598	26	3.0	26	92	0	127	28	25	16	28	1.97
6100872--6102349	738	2.0	739	90	0	2357	26	24	22	25	2.00
6101612--6110789	892	10.4	897	83	6	10850	26	24	23	25	2.00
6107628--6107680	26	2.0	26	85	0	70	28	24	20	26	1.99
6108524--6108576	26	2.0	26	96	0	97	26	24	22	26	2.00
6109222--6109247	4	6.5	4	100	0	52	0	73	26	0	0.84
6109430--6109480	26	2.0	26	96	0	93	27	21	19	31	1.97
6113571--6117872	881	4.9	874	85	5	5667	25	25	24	25	2.00
6116061--6116112	26	2.0	25	88	3	77	30	25	17	26	1.97
6117846--6117898	26	2.0	26	88	0	79	24	26	20	28	1.99
6117464--6118411	476	2.0	475	87	1	1362	24	27	24	23	2.00
6118317--6118373	26	2.2	26	87	0	87	29	22	17	29	1.97
6117940--6125681	891	8.6	894	82	7	8640	25	24	24	25	2.00
6120103--6120153	26	2.0	26	96	0	93	27	23	21	27	1.99
6121863--6121915	26	2.0	26	92	0	88	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6122754--6122805	25	2.0	26	88	3	79	26	25	21	26	1.99
6125472--6125527	26	2.2	26	100	0	112	28	25	19	26	1.99
6126520--6126572	26	2.0	26	85	7	72	32	22	16	28	1.96
6127573--6127625	26	2.0	26	88	0	79	28	22	18	30	1.98
6128620--6128672	26	2.0	26	96	0	97	28	24	20	26	1.99
6127781--6131128	905	3.7	902	86	3	4605	26	24	23	25	2.00
6130515--6131754	635	2.0	635	93	0	2115	27	22	22	26	1.99
6131947--6131999	26	2.0	26	96	0	97	26	24	20	28	1.99
6132859--6132937	26	3.0	26	96	3	142	30	26	16	26	1.97
6133316--6133352	16	2.3	16	95	0	65	37	27	18	16	1.92
6131150--6156984	900	28.8	898	83	5	28866	25	24	24	25	2.00
6136488--6136538	26	2.0	26	92	0	84	27	23	19	29	1.98
6139958--6140088	26	5.0	26	87	3	192	29	25	17	27	1.97
6140931--6141034	26	4.0	26	89	1	165	29	25	16	28	1.97
6141901--6141953	26	2.0	26	96	0	97	26	24	20	28	1.99
6148171--6148221	26	2.0	26	92	0	84	29	27	17	25	1.98
6149947--6149999	26	2.0	26	88	0	79	28	22	18	30	1.98
6151752--6151804	26	2.0	26	88	0	79	28	24	20	26	1.99
6152632--6152684	26	2.0	26	100	0	106	30	26	16	26	1.97
6154409--6154460	26	2.0	26	92	3	88	28	25	19	26	1.98
6155309--6155360	26	2.0	26	100	0	104	26	26	19	26	1.99
6156183--6156235	26	2.0	26	88	0	79	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6156973--6159535	876	2.9	873	89	3	3817	25	25	23	25	2.00
6160366--6160416	26	2.0	26	96	0	93	27	23	21	27	1.99
6160840--6160898	26	2.2	27	81	3	66	61	11	6	20	1.53
6161265--6161320	26	2.2	26	93	0	94	28	25	19	26	1.99
6162163--6162215	26	2.0	26	100	0	106	26	26	20	26	1.99
6163053--6163104	26	2.0	26	92	0	86	26	23	19	30	1.98
6163955--6164009	25	2.2	26	93	3	94	29	21	20	29	1.98
6159507--6164344	904	5.4	902	86	3	6500	25	24	24	25	2.00
6171425--6171711	59	4.9	58	87	7	409	33	13	8	43	1.75
6171425--6171711	117	2.4	117	93	3	479	33	13	8	43	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129