genome.fa.s24.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  80  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12739964--12740010	15	3.2	14	80	17	51	31	0	6	61	1.21
12739971--12740012	14	2.9	15	83	13	52	30	0	4	64	1.14
12741512--12741544	16	2.1	16	100	0	66	24	36	12	27	1.91
12751608--12751726	62	1.9	61	81	1	139	36	7	8	47	1.62
12751754--12751866	4	28.2	4	70	13	54	69	7	3	19	1.26
12751764--12751868	27	4.0	25	71	19	81	71	7	2	18	1.22
12751764--12751868	14	8.0	12	73	17	68	71	7	2	18	1.22
12751820--12751879	22	2.7	22	82	12	61	71	3	5	20	1.19
12752671--12752695	10	2.5	10	100	0	50	0	8	0	92	0.40
12754305--12754400	30	3.2	30	86	2	104	53	3	5	38	1.39
12754576--12754629	23	2.2	25	83	12	67	46	0	3	50	1.19
12755027--12755058	16	1.9	17	93	6	57	68	0	3	28	1.04
12755025--12755058	17	1.9	17	88	5	50	67	0	2	29	1.05
12755325--12755349	12	2.1	12	100	0	50	40	0	0	60	0.97
12755335--12755406	30	2.3	31	80	7	83	45	0	1	52	1.09
12756257--12756324	28	2.4	27	82	4	73	48	4	0	47	1.22
12756707--12756820	18	7.0	18	72	18	90	55	1	0	42	1.10
12756713--12756859	15	9.6	15	70	19	90	55	1	0	42	1.13
12756728--12756851	11	11.5	11	64	23	50	55	1	0	41	1.15
12756709--12756860	23	6.3	23	74	17	103	56	1	0	41	1.12
12756890--12756933	19	2.3	18	84	7	52	43	2	0	54	1.12
12756915--12756945	14	2.3	13	94	5	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12756888--12756980	16	5.3	16	73	14	51	45	1	0	53	1.07
12764900--12764939	22	1.9	20	85	10	53	52	2	5	40	1.37
12767661--12767783	23	5.0	24	75	18	105	50	0	0	47	1.12
12767664--12767844	38	4.8	37	74	14	124	49	1	0	48	1.15
12767660--12767838	96	1.9	96	81	10	222	48	1	0	49	1.15
12777472--12777517	2	23.0	2	95	0	83	47	0	52	0	1.00
12781429--12781753	163	2.0	161	93	3	553	19	28	12	39	1.88
12783007--12783069	26	2.4	26	84	5	74	53	1	12	31	1.48
12783468--12783509	16	2.6	16	88	7	59	57	7	0	35	1.26
12784044--12784073	14	2.1	15	93	6	53	63	0	0	36	0.95
12784363--12784425	18	3.6	18	72	22	53	50	1	4	42	1.32
12784422--12784473	26	2.0	26	84	3	68	53	1	3	40	1.30
12785419--12785485	32	2.1	32	83	5	82	43	0	0	56	0.99
12785796--12785859	28	2.4	28	86	5	87	60	0	1	37	1.06
12786684--12786730	18	2.7	18	77	9	53	57	0	0	42	0.98
12786705--12786744	19	2.2	18	86	4	53	62	0	0	37	0.95
12787889--12787951	18	3.8	17	73	10	58	39	0	1	58	1.07
12791726--12791792	35	1.9	35	81	3	82	40	4	2	52	1.37
12791806--12791889	38	2.2	39	87	8	118	38	0	3	58	1.16
12791844--12791938	27	3.5	27	77	14	79	35	0	6	57	1.24
12791992--12792053	21	2.9	20	78	9	61	37	1	3	58	1.24
12813156--12813208	16	3.5	15	73	12	54	50	0	3	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12813263--12813334	28	2.7	28	71	26	66	48	0	4	47	1.21
12813683--12813722	2	20.0	2	94	0	71	47	0	52	0	1.00
12815602--12815671	12	6.0	11	74	14	61	41	1	5	51	1.34
12817735--12818059	163	2.0	161	93	3	553	19	29	12	39	1.88
12819737--12819778	16	2.6	16	88	7	59	57	7	0	35	1.26
12820311--12820340	14	2.1	15	93	6	53	63	0	0	36	0.95
12820630--12820696	19	3.7	19	69	15	61	52	5	2	38	1.41
12820598--12820695	34	2.8	36	82	8	98	51	5	4	39	1.43
12824313--12824396	28	3.1	28	80	13	70	63	1	1	34	1.10
12824352--12824404	25	2.2	24	83	10	63	58	3	0	37	1.16
12825529--12825574	22	2.1	22	84	4	58	36	4	6	52	1.47
12825987--12826026	18	2.3	17	86	4	53	45	2	0	52	1.14
12835679--12835703	12	2.1	12	100	0	50	44	0	0	56	0.99
12836199--12836241	2	21.5	2	100	0	86	51	0	48	0	1.00
12837829--12837895	6	11.3	6	70	12	50	41	1	4	52	1.31
12840043--12840367	163	2.0	161	93	3	562	19	28	12	39	1.88
12841625--12841689	26	2.5	26	85	5	78	53	1	12	32	1.47
12842700--12842729	14	2.1	15	93	6	53	63	0	0	36	0.95
12843036--12843133	46	2.1	45	81	10	110	48	2	6	42	1.39
12844073--12844139	32	2.1	32	83	5	82	43	0	0	56	0.99
12844452--12844516	28	2.3	27	82	10	69	61	0	1	36	1.05
12845326--12845372	18	2.7	18	77	9	53	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12846529--12846591	18	3.8	17	73	10	58	39	0	1	58	1.07
12850447--12850527	38	2.1	39	86	9	112	37	0	3	59	1.15
12850482--12850576	27	3.5	27	77	14	79	35	0	6	57	1.24
12850559--12850645	37	2.4	37	82	7	106	39	2	0	58	1.11
12850629--12850690	21	2.9	20	78	9	61	37	1	3	58	1.24
12862426--12862451	2	13.0	2	100	0	52	0	50	0	50	1.00
12867438--12867470	12	2.8	12	90	4	50	18	0	3	78	0.87
12867666--12867700	17	2.1	17	88	0	52	20	8	2	68	1.29
12869793--12870028	121	2.0	121	90	0	373	38	12	13	35	1.83
12871390--12871428	20	2.0	20	100	0	78	38	15	15	30	1.88
12873057--12873083	2	13.5	2	100	0	54	51	0	0	48	1.00
12885979--12886141	43	3.7	43	73	12	114	31	8	11	48	1.69
12885966--12886141	92	1.9	92	82	6	223	30	8	10	50	1.67
12886461--12886579	48	2.4	48	79	4	132	31	10	13	44	1.77
12889187--12889239	21	2.4	22	84	9	72	49	0	0	50	1.00
12889966--12890006	19	2.2	19	86	8	57	53	0	0	46	1.00
12890018--12890111	42	2.3	42	82	10	117	52	1	2	44	1.20
12890469--12890505	18	2.1	18	89	0	56	43	13	2	40	1.58
12896806--12896840	17	2.1	17	94	0	61	31	28	0	40	1.57
12910620--12910725	41	2.6	42	84	13	132	42	0	0	56	1.05
12910626--12910729	42	2.3	45	79	15	126	42	0	0	56	1.05
12910641--12910715	22	3.5	22	66	26	61	44	0	1	54	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12910723--12910768	16	2.9	16	75	15	51	50	0	0	50	1.00
12911354--12911408	27	2.0	27	96	0	101	56	0	5	38	1.23
12911510--12911632	63	1.9	66	81	5	153	38	6	6	48	1.55
12911615--12911920	72	4.3	71	78	8	255	40	8	5	45	1.58
12911559--12911914	71	5.0	73	75	9	266	40	7	6	45	1.58
12912344--12912391	23	2.1	23	85	11	64	31	0	2	66	1.03
12913422--12913465	14	3.3	13	82	14	54	38	0	0	61	0.96
12913422--12913465	12	3.3	14	85	14	58	38	0	0	61	0.96
12914218--12914252	2	17.5	2	100	0	70	51	0	0	48	1.00
12914486--12914523	12	2.8	14	81	18	53	23	7	39	28	1.83
12915499--12915542	23	1.9	23	90	9	72	45	0	2	52	1.13
12916755--12916824	31	2.3	31	85	5	88	48	8	4	38	1.53
12918477--12918532	16	3.4	16	74	11	51	28	0	3	67	1.07
12919233--12919278	20	2.4	19	85	3	56	13	10	6	69	1.35
12926460--12926501	15	2.8	15	78	10	50	45	0	0	54	0.99
12927516--12927561	20	2.3	20	88	0	74	54	0	0	45	0.99
12927568--12927617	16	3.4	16	78	18	63	66	0	0	34	0.92
12927567--12927617	14	3.6	14	74	12	50	64	0	0	35	0.94
12927549--12927606	18	3.4	17	80	9	64	65	0	0	34	0.93
12927687--12927780	41	2.3	40	80	10	111	52	7	4	36	1.49
12928650--12928705	26	2.1	26	83	6	67	57	5	0	37	1.22
12934566--12934623	26	2.2	27	76	20	68	22	3	5	68	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12940418--12940451	17	2.0	17	88	0	50	82	0	17	0	0.67
12941621--12941653	15	2.1	16	88	5	50	21	0	3	75	0.93
12943729--12943767	11	3.5	11	86	13	62	71	0	0	28	0.86
12944398--12944427	2	15.5	2	93	6	53	50	0	0	50	1.00
12945255--12945323	29	2.4	28	83	11	79	43	2	2	50	1.32
12945277--12945335	29	2.0	31	90	6	95	47	3	1	47	1.29
12945956--12945980	2	12.5	2	100	0	50	52	0	0	48	1.00
12946036--12946086	19	2.5	22	81	12	56	49	3	3	43	1.39
12946571--12946633	32	2.0	32	100	0	126	31	9	26	31	1.88
12954585--12954659	29	2.5	30	82	8	91	34	1	4	60	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129