genome.fa.s24.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  46  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6171425--6171718	119	2.5	118	90	7	463	33	13	8	44	1.74
6171809--6171847	20	1.9	21	94	5	71	76	5	12	5	1.11
6172157--6172201	20	2.3	20	80	3	56	26	20	24	28	1.99
6190271--6190355	37	2.3	37	97	0	161	24	29	11	34	1.91
6201378--6201419	22	1.9	22	95	0	75	26	40	14	19	1.89
6227227--6228065	129	6.5	127	73	12	414	38	16	7	37	1.76
6228241--6228482	132	1.8	132	88	3	371	40	14	7	37	1.75
6228605--6229413	128	6.3	127	76	8	610	37	17	8	36	1.80
6228604--6229304	130	5.4	126	77	7	402	37	18	7	36	1.79
6229544--6229841	130	2.3	130	77	8	320	40	18	4	35	1.72
6230129--6230451	130	2.5	130	79	5	339	36	16	8	38	1.79
6230542--6231143	129	4.7	127	73	13	444	38	18	7	36	1.78
6230627--6230900	128	2.1	129	81	6	306	38	18	8	34	1.81
6231117--6231263	75	2.0	75	90	4	237	48	21	2	28	1.61
6231791--6232128	132	2.6	127	76	11	290	39	14	6	39	1.72
6232260--6232800	128	4.2	128	76	8	395	38	19	8	33	1.81
6233550--6233945	129	3.1	128	78	6	419	37	16	8	36	1.80
6233985--6234621	130	4.9	130	78	4	601	38	17	8	35	1.81
6236968--6237087	53	2.3	51	88	2	168	40	16	4	38	1.68
6236967--6237050	25	3.2	25	69	21	73	40	16	3	39	1.66
6237393--6238187	128	6.3	128	72	10	494	39	17	7	35	1.78
6238025--6238269	121	2.1	118	81	5	280	37	18	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6238590--6239051	129	3.6	128	80	5	493	40	15	7	36	1.76
6239080--6239166	41	2.1	41	93	2	158	37	11	4	45	1.61
6239144--6239497	115	3.0	113	76	11	320	39	18	6	35	1.75
6239264--6239495	122	1.9	122	85	3	324	40	19	6	34	1.76
6239640--6240359	129	5.6	129	74	9	468	38	16	8	36	1.80
6240008--6240361	130	2.7	129	78	3	392	39	18	9	32	1.82
6240426--6241784	130	10.5	128	76	7	926	38	18	7	35	1.79
6240108--6240798	369	1.9	369	78	4	768	40	18	8	32	1.80
6240446--6241784	259	5.2	260	76	5	944	38	18	7	35	1.80
6241855--6244320	129	19.0	128	73	10	1335	38	16	8	36	1.79
6244548--6244799	129	1.9	130	86	2	355	36	16	9	37	1.81
6244918--6245384	258	1.8	257	78	4	537	41	17	7	33	1.78
6244931--6245743	129	6.3	126	74	8	387	39	17	6	35	1.77
6245958--6246263	126	2.4	126	79	8	296	36	20	8	34	1.82
6246245--6246662	132	3.2	129	76	9	361	39	15	6	38	1.73
6245872--6248226	259	9.1	255	72	11	895	38	17	8	35	1.79
6246961--6248226	130	9.9	130	73	10	665	38	17	8	35	1.80
6248529--6250179	129	12.8	131	78	6	1186	38	17	7	36	1.79
6248548--6250179	389	4.2	388	80	4	1567	38	17	7	36	1.79
6248531--6250194	258	6.4	257	80	4	1426	38	17	7	36	1.79
6251245--6252471	129	9.6	129	74	9	846	38	17	7	35	1.78
6252567--6253395	130	6.4	132	75	8	521	38	17	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6253756--6254987	129	9.4	129	72	6	654	38	16	8	36	1.79
6255251--6255559	130	2.4	128	77	4	307	39	17	8	34	1.80
6255779--6256383	129	4.7	128	75	9	451	40	15	7	36	1.76
6255029--6256297	570	2.2	573	79	8	1352	39	17	7	35	1.78
6255974--6257213	130	9.5	125	74	11	769	39	17	7	36	1.78
6256769--6258312	571	2.7	566	76	10	1302	38	17	8	35	1.80
6257953--6258312	128	2.8	129	84	6	385	37	17	9	35	1.82
6258021--6258312	128	2.3	128	88	4	419	39	17	8	34	1.80
6259545--6261259	180	9.6	181	74	7	747	41	8	8	40	1.66
6260117--6260156	21	2.0	19	85	9	53	32	17	10	40	1.83
6259379--6262644	536	6.1	534	77	8	2317	42	9	7	41	1.66
6259379--6263062	181	20.6	178	73	10	2063	42	9	7	40	1.65
6262265--6262589	167	1.9	167	81	4	388	42	7	8	41	1.63
6276593--6277599	522	1.9	522	81	4	1215	35	12	16	35	1.86
6278110--6278715	159	3.8	161	78	7	608	39	12	18	29	1.88
6279677--6280856	159	7.5	158	78	7	1096	39	12	16	31	1.85
6279710--6280856	321	3.7	308	78	9	973	40	12	16	31	1.85
6280907--6282019	158	7.0	158	79	5	1045	39	12	17	30	1.87
6280907--6284863	316	12.2	317	68	14	1229	39	12	17	30	1.86
6282019--6283129	158	7.1	156	74	9	733	40	12	16	30	1.85
6281665--6282383	397	1.8	396	79	6	853	39	12	17	30	1.86
6281561--6282574	555	1.8	553	79	6	1170	40	12	16	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6282087--6282775	157	4.3	155	76	10	488	41	12	16	29	1.84
6282180--6282770	317	1.9	316	82	3	740	41	11	16	29	1.84
6283209--6284863	158	10.4	158	77	5	1337	39	12	17	30	1.87
6283209--6284863	317	5.2	315	77	7	1363	39	12	17	30	1.87
6284936--6286425	159	9.5	158	74	8	1021	38	11	18	32	1.86
6310375--6310468	44	2.1	45	82	5	111	26	19	30	23	1.98
6349331--6349433	45	2.3	45	87	0	143	29	24	28	18	1.98
6349351--6349458	45	2.4	45	82	0	117	28	23	27	20	1.99
6359727--6359983	44	5.7	46	77	5	206	45	15	12	25	1.82
6359753--6360019	44	6.0	46	75	9	171	46	16	11	25	1.81
6359719--6360008	44	6.5	44	76	10	166	45	15	12	26	1.82
6359727--6360017	43	6.6	43	75	10	192	46	15	12	25	1.81
6359998--6360089	23	3.9	23	72	13	78	50	18	8	22	1.74
6359976--6360080	49	2.1	50	91	1	167	48	16	11	23	1.78
6360066--6360166	47	2.1	47	87	0	139	52	16	11	18	1.74
6360154--6360457	43	6.9	44	80	3	283	42	17	14	25	1.87
6360706--6360776	33	2.2	33	86	0	97	36	23	14	25	1.92
6361491--6361529	14	2.8	13	81	11	51	2	12	0	84	0.72
6361489--6361529	21	2.0	21	90	4	66	2	12	0	85	0.70
6369255--6369308	4	13.2	4	79	11	56	74	3	0	22	0.98
6369255--6369308	13	4.4	12	79	9	56	74	3	0	22	0.98
6369255--6369308	25	2.2	24	90	3	81	74	3	0	22	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6374615--6374707	45	2.1	45	85	4	125	33	24	23	18	1.97
6374632--6374718	45	1.9	45	83	4	113	33	26	21	18	1.96
6393995--6394055	27	2.3	26	85	2	77	65	4	1	27	1.22
6416374--6416398	6	4.2	6	100	0	50	20	16	32	32	1.94
6416383--6416452	29	2.4	29	78	0	77	21	18	24	35	1.95
6417501--6417728	113	2.0	113	91	0	366	32	9	27	30	1.89
6451342--6451884	144	3.8	142	80	5	565	31	15	13	39	1.87
6454197--6454253	3	19.0	3	88	0	51	66	12	0	21	1.23
6464823--6464864	13	3.3	12	87	9	57	88	7	2	2	0.69
6466015--6466073	22	2.7	22	84	10	84	25	18	23	32	1.97
6466268--6466381	22	5.2	22	86	0	147	34	25	13	27	1.93
6465960--6466326	126	2.9	127	84	3	490	32	17	16	33	1.92
6466332--6466544	106	2.0	106	84	1	275	30	17	15	35	1.92
6466698--6466754	11	5.1	11	75	10	53	84	8	1	5	0.84
6466698--6466752	17	3.2	18	82	10	71	85	7	1	5	0.80
6466790--6466918	49	2.7	49	82	1	152	27	15	20	35	1.93
6466922--6467052	37	3.6	37	77	9	142	31	17	13	37	1.89
6467087--6467219	37	3.6	37	84	0	158	27	16	17	38	1.91
6466896--6467342	166	2.7	166	82	5	530	31	16	16	36	1.90
6467254--6467343	37	2.5	36	85	5	110	34	16	13	35	1.88
6467914--6468405	145	3.4	145	78	4	476	31	13	12	42	1.81
6475475--6475581	45	2.4	45	77	3	117	24	17	30	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6485108--6485143	18	2.0	18	100	0	72	44	11	22	22	1.84
6496095--6496164	33	2.1	33	86	5	97	22	34	21	21	1.97
6496112--6496183	33	2.2	33	85	9	94	29	34	20	15	1.93
6498573--6498741	82	2.1	82	89	0	257	28	23	14	33	1.93
6510123--6510207	43	2.0	43	88	0	125	30	9	28	31	1.88
6517697--6517735	20	2.0	19	90	5	60	25	0	2	71	0.98
6517985--6518030	4	11.0	4	90	9	74	73	2	0	23	0.94
6517985--6518039	18	3.2	17	90	10	85	74	1	1	21	1.01
6528809--6528865	23	2.5	23	88	0	78	19	26	28	26	1.99
6528830--6528882	23	2.3	23	83	0	70	22	20	24	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129