genome.fa.s24.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  111  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18618599--18618639	18	2.3	18	87	4	66	17	2	0	80	0.82
18618653--18619115	59	7.7	58	77	12	409	43	5	12	38	1.66
18618641--18619115	182	2.6	179	84	5	629	44	5	12	37	1.65
18618641--18619114	121	3.9	118	79	12	380	44	5	12	37	1.65
18620587--18620617	16	1.9	16	93	0	53	35	16	0	48	1.46
18624368--18624411	22	2.1	20	87	8	61	20	0	4	75	0.98
18624445--18624492	23	2.0	23	84	8	60	35	2	10	52	1.48
18624579--18624655	19	3.8	19	77	13	66	76	3	2	16	1.05
18624595--18624665	5	13.8	5	72	25	51	77	1	4	16	1.00
18624592--18624666	22	3.3	21	77	14	78	78	1	4	16	0.96
18625552--18625634	15	5.8	15	73	17	70	55	7	2	34	1.41
18626465--18626562	51	1.9	51	81	6	119	41	12	14	31	1.82
18626499--18626564	17	3.9	17	78	5	62	45	12	12	30	1.78
18626430--18626791	82	4.3	81	77	9	300	36	12	17	33	1.87
18626430--18626791	168	2.2	167	83	3	433	36	12	17	33	1.87
18627662--18627711	8	5.9	8	81	11	55	2	14	0	84	0.72
18627663--18627702	13	2.9	14	85	7	64	0	15	0	85	0.61
18627662--18627700	15	2.7	14	88	4	51	0	12	0	87	0.55
18627663--18627719	27	2.1	27	83	6	71	1	15	1	80	0.87
18627699--18627736	14	2.6	15	88	12	53	5	15	5	73	1.19
18631706--18631743	20	1.9	20	89	10	60	26	0	2	71	1.00
18633812--18634244	59	7.3	57	75	10	327	47	6	11	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18634312--18634339	5	5.6	5	100	0	56	35	0	0	64	0.94
18638301--18638419	8	14.5	8	73	23	56	79	0	11	8	0.92
18638315--18638419	9	12.4	9	71	18	59	80	0	10	9	0.92
18638300--18638426	58	2.2	57	79	16	147	78	0	13	7	0.95
18638304--18638425	42	3.0	40	80	17	133	79	0	12	8	0.93
18638300--18638425	16	7.8	15	76	12	74	79	0	12	7	0.93
18639560--18639616	21	2.6	22	86	2	71	36	5	17	40	1.72
18640108--18640256	42	3.6	42	84	11	207	25	11	21	41	1.86
18640108--18640363	84	3.0	81	81	8	239	25	13	20	40	1.89
18640177--18640548	44	8.6	44	79	8	311	25	12	17	44	1.84
18642702--18643128	59	7.2	59	74	10	304	47	5	11	35	1.65
18642702--18643079	116	3.2	117	74	12	288	47	5	11	34	1.64
18643789--18643831	19	2.3	19	87	0	59	76	4	4	13	1.10
18644717--18644781	26	2.7	26	81	11	77	53	7	3	35	1.45
18645806--18645835	3	10.0	3	92	0	51	30	0	36	33	1.58
18647493--18647928	158	2.8	158	83	0	541	31	5	21	41	1.76
18652973--18653011	8	4.5	8	84	15	51	84	0	12	2	0.72
18652981--18653015	18	2.0	17	94	5	61	85	0	14	0	0.59
18652974--18653015	21	2.0	21	86	9	59	83	0	14	2	0.75
18652973--18653012	9	4.4	9	84	12	55	85	0	12	2	0.71
18653001--18653056	23	2.5	22	82	8	76	62	0	10	26	1.28
18656283--18656577	31	9.4	31	73	10	190	32	13	18	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18658549--18658731	87	2.1	87	95	1	332	22	14	15	46	1.82
18668203--18668808	58	10.7	57	74	12	357	49	4	10	35	1.58
18668210--18668710	116	4.4	113	77	12	408	49	4	10	35	1.56
18668497--18668809	59	5.5	54	76	13	178	49	5	9	35	1.58
18668669--18668832	53	3.0	54	81	7	154	43	4	12	39	1.63
18668734--18668849	53	2.2	53	82	3	126	44	4	11	39	1.60
18669885--18669926	17	2.5	17	96	0	75	23	30	4	40	1.75
18674823--18674867	23	2.0	23	86	8	65	33	24	8	33	1.86
18677482--18677815	56	6.0	55	74	13	222	50	3	9	37	1.52
18679336--18679425	3	29.7	3	80	10	76	61	1	7	30	1.31
18679408--18679432	13	1.9	13	100	0	50	72	0	0	28	0.86
18679424--18679462	18	2.2	18	90	0	60	74	2	10	12	1.17
18682712--18682755	23	1.9	23	95	0	79	22	20	2	54	1.56
18682855--18682928	20	3.7	20	79	16	80	74	2	2	20	1.07
18683394--18683450	20	2.7	22	76	15	57	77	1	15	5	1.03
18684114--18684863	34	22.3	34	72	8	329	33	19	13	33	1.91
18684115--18684799	102	6.8	101	75	7	513	33	19	13	33	1.90
18684524--18684863	166	2.0	166	82	3	407	34	18	13	33	1.90
18684467--18684798	32	10.0	32	71	13	156	33	19	13	33	1.91
18684751--18684881	68	1.9	68	84	3	174	30	19	16	33	1.94
18685365--18685407	18	2.4	18	84	0	50	27	18	6	46	1.75
18685522--18686096	299	1.9	301	89	2	906	44	9	15	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18686057--18686115	22	2.7	22	86	0	82	32	23	15	28	1.95
18686102--18686274	82	2.1	83	84	3	233	38	15	12	34	1.85
18686314--18686505	37	5.2	36	79	4	206	28	15	19	36	1.92
18687851--18687913	26	2.4	26	97	0	117	52	14	25	7	1.68
18689489--18689890	63	6.4	60	75	13	248	41	8	14	36	1.75
18691005--18691055	21	2.4	21	100	0	102	39	15	7	37	1.77
18694970--18695028	22	2.7	22	84	5	66	38	8	18	33	1.81
18695571--18696118	41	13.4	40	83	8	634	24	15	20	39	1.91
18696234--18696378	43	3.4	42	82	3	173	26	15	20	37	1.93
18696253--18696383	44	3.0	43	77	10	133	27	13	18	40	1.88
18696604--18696727	3	37.7	3	75	16	88	32	4	1	61	1.27
18697111--18697224	27	4.3	27	72	13	74	22	0	6	71	1.08
18697133--18697253	6	18.8	6	72	17	75	18	0	4	76	0.99
18697135--18697268	8	15.8	8	71	20	69	17	1	3	76	1.00
18697143--18697262	19	5.9	19	71	21	77	18	0	4	76	0.99
18697133--18697263	14	9.4	14	68	17	78	18	0	3	77	0.97
18697107--18697262	81	1.9	80	87	8	228	20	0	5	73	1.06
18697135--18697263	21	6.1	21	70	22	76	17	0	3	77	0.96
18697288--18697880	58	10.2	58	82	7	691	43	6	12	37	1.69
18697314--18697879	117	4.9	116	86	6	727	43	6	13	36	1.70
18697290--18697876	59	10.1	58	82	7	663	43	6	12	36	1.69
18697729--18697818	27	3.2	27	64	22	67	42	5	14	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18699609--18699636	1	28.0	1	100	0	56	100	0	0	0	0.00
18700110--18700147	2	19.0	2	100	0	76	50	0	0	50	1.00
18703530--18703561	15	2.1	16	94	5	57	15	3	0	81	0.82
18703722--18703756	14	2.5	14	85	0	52	65	17	2	14	1.38
18707525--18707561	2	18.5	2	100	0	74	48	0	0	51	1.00
18708060--18708418	126	2.8	128	92	3	580	29	18	15	36	1.92
18711004--18711284	58	4.8	58	81	9	327	44	7	11	35	1.70
18713513--18713565	27	2.0	27	85	7	72	50	3	3	41	1.38
18714219--18714416	61	3.3	61	77	7	154	39	15	15	29	1.88
18714331--18714584	125	2.0	126	84	4	338	33	16	12	37	1.87
18720729--18720831	41	2.5	42	80	1	127	34	21	15	28	1.94
18721142--18721171	13	2.3	13	94	0	51	50	0	20	30	1.49
18721131--18721157	9	3.0	9	100	0	54	55	0	11	33	1.35
18721133--18721176	22	2.0	22	86	0	61	50	2	18	29	1.59
18722246--18722310	26	2.4	27	82	7	78	7	21	0	70	1.11
18723070--18723124	4	14.5	4	75	11	53	27	0	1	70	0.97
18739186--18739421	79	3.0	79	81	2	303	35	6	25	33	1.81
18739189--18739452	79	3.3	79	79	2	296	34	6	25	33	1.82
18739739--18739782	23	1.9	23	85	0	61	43	2	13	40	1.57
18740090--18740446	43	8.2	43	82	5	369	26	11	15	46	1.80
18740090--18740461	87	4.3	87	79	9	366	27	11	16	45	1.81
18740698--18740750	4	14.2	4	73	15	51	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18740698--18740750	18	2.9	18	86	8	72	26	0	0	73	0.83
18740698--18740748	20	2.5	20	81	18	70	27	0	0	72	0.85
18740702--18740746	14	3.4	14	84	9	58	26	0	0	73	0.84
18741402--18741440	17	2.3	17	90	0	60	69	0	30	0	0.89
18741394--18741452	29	2.0	29	83	0	73	66	1	30	1	1.12
18742154--18742257	45	2.3	45	88	1	145	54	9	8	26	1.62
18746942--18747026	41	2.1	41	84	4	109	23	14	10	51	1.72
18748653--18749153	42	12.1	42	78	10	372	41	19	13	25	1.88
18748653--18749153	82	6.0	81	78	10	451	41	19	13	25	1.88
18748653--18749153	124	4.0	123	79	10	527	41	19	13	25	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129