genome.fa.s24.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  20  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2821496--2827544	873	6.8	872	83	6	7196	25	24	23	25	2.00
2829265--2829316	26	2.0	26	92	3	88	28	25	19	26	1.98
2828395--2831699	892	3.7	888	85	4	4375	26	24	24	24	2.00
2831493--2831542	25	2.0	25	88	4	73	60	14	4	22	1.51
2831751--2831803	26	2.0	26	92	0	88	30	22	16	30	1.96
2833183--2833235	26	2.0	26	96	0	97	26	24	20	28	1.99
2835818--2836184	159	2.3	159	87	1	495	19	28	29	22	1.98
2836160--2836210	26	2.0	26	92	0	84	27	21	19	31	1.97
2837961--2838013	26	2.0	26	88	0	79	32	24	16	26	1.97
2835967--2840633	895	5.2	887	84	5	5826	25	24	24	25	2.00
2839714--2839766	26	2.0	26	88	0	79	26	26	22	24	2.00
2840189--2840247	26	2.2	26	79	8	66	59	5	8	27	1.48
2840443--2840795	159	2.2	159	88	1	519	20	28	28	22	1.98
2839018--2840633	893	1.8	890	86	2	2089	27	23	23	25	2.00
2841641--2841693	26	2.0	26	96	0	97	28	26	18	26	1.98
2843291--2844843	709	2.2	712	88	1	2263	25	24	24	25	2.00
2846552--2846604	26	2.0	26	92	0	88	30	26	18	24	1.98
2847455--2847507	26	2.0	26	100	0	106	26	26	20	26	1.99
2846211--2852674	903	7.3	901	84	4	8118	25	24	24	25	2.00
2849203--2849255	26	2.0	26	88	0	79	30	24	16	28	1.97
2850104--2850153	26	1.9	26	95	0	91	26	28	20	26	1.99
2850984--2851034	26	2.0	26	92	0	84	31	25	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2850587--2852664	902	2.3	900	87	3	3006	25	24	23	25	2.00
2851884--2851936	26	2.0	26	100	0	106	26	26	20	26	1.99
2854158--2854208	26	2.0	26	92	0	84	27	25	17	29	1.98
2856790--2856868	26	3.0	26	94	0	140	27	25	18	27	1.98
2858613--2858665	26	2.0	26	88	0	79	28	24	20	26	1.99
2855562--2861978	903	7.1	893	84	5	7858	25	24	23	25	2.00
2860385--2860436	26	2.0	26	92	0	86	28	25	17	28	1.97
2859511--2861974	901	2.7	901	88	1	3637	26	24	23	25	2.00
2861475--2863000	512	3.0	510	91	2	2386	30	22	19	27	1.98
2863205--2863252	25	1.9	25	91	0	78	27	27	18	27	1.98
2864795--2864847	26	2.0	26	85	7	72	28	28	16	26	1.97
2865683--2865735	26	2.0	26	96	0	97	24	26	20	28	1.99
2864155--2867500	897	3.7	897	88	2	4771	26	25	23	25	2.00
2866579--2866631	26	2.0	26	92	0	88	30	28	15	26	1.96
2869177--2869229	26	2.0	26	88	0	79	26	24	20	28	1.99
2870957--2871009	26	2.0	26	92	0	88	26	26	20	26	1.99
2868304--2872097	894	4.2	895	85	4	4948	25	24	24	25	2.00
2872536--2872588	26	2.0	26	89	7	81	28	26	15	30	1.96
2872099--2874756	889	3.0	887	88	2	3851	25	24	23	25	2.00
2875150--2875202	26	2.0	26	92	0	88	28	22	20	28	1.99
2873930--2875559	816	2.0	822	87	4	2396	23	25	25	25	2.00
2876053--2876105	26	2.0	26	85	0	70	30	22	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2876764--2877146	159	2.4	159	86	3	520	20	30	27	21	1.98
2877114--2877166	26	2.0	26	92	0	88	26	22	20	30	1.98
2878013--2878061	26	1.9	26	95	4	91	24	24	20	30	1.98
2878901--2878953	26	2.0	26	96	0	97	26	24	20	28	1.99
2879804--2879856	26	2.0	26	100	0	106	30	26	16	26	1.97
2876931--2882398	903	6.1	901	86	2	7222	25	24	23	25	2.00
2881612--2881664	26	2.0	26	96	0	97	28	26	18	26	1.98
2883225--2883277	26	2.0	26	96	0	97	28	26	18	26	1.98
2882350--2892464	902	11.2	902	78	9	9416	25	24	24	25	2.00
2885507--2885563	25	2.2	26	81	3	62	61	8	8	21	1.52
2886608--2887013	159	2.6	159	82	0	481	19	28	29	22	1.98
2891347--2891399	26	2.0	26	92	0	88	28	24	18	28	1.98
2888740--2892464	898	4.2	876	83	7	4157	26	24	24	25	2.00
2892245--2892297	26	2.0	26	88	0	79	28	26	18	26	1.98
2893344--2893396	26	2.0	26	96	0	97	26	24	20	28	1.99
2894248--2894298	26	2.0	26	100	0	102	27	25	19	27	1.99
2892637--2894739	901	2.3	901	88	1	3084	26	24	23	26	2.00
2894963--2895015	26	2.0	26	96	0	97	26	24	20	28	1.99
2894024--2895453	717	2.0	717	87	2	2057	22	25	25	25	2.00
2895838--2895888	26	2.0	26	100	0	102	27	25	19	27	1.99
2896735--2896787	26	2.0	26	92	0	88	26	22	16	33	1.96
2897602--2897654	26	2.0	26	92	0	88	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2899369--2899421	26	2.0	26	96	0	97	26	24	20	28	1.99
2900283--2900308	13	2.0	13	100	0	52	30	23	23	23	1.99
2901149--2901201	26	2.0	26	96	0	97	28	26	18	26	1.98
2902010--2902062	26	2.0	26	92	0	88	26	26	20	26	1.99
2902918--2902967	26	1.9	26	95	0	91	28	26	18	28	1.98
2901320--2914524	895	14.7	892	78	9	11431	25	24	23	25	2.00
2895862--2908276	870	14.1	876	83	6	14326	25	24	24	25	2.00
2906428--2906480	26	2.0	26	100	0	106	26	26	20	26	1.99
2908280--2908332	26	2.0	26	92	0	88	28	24	18	28	1.98
2909184--2909239	26	2.2	26	90	0	85	28	23	17	30	1.97
2910983--2911035	26	2.0	26	92	0	88	26	26	20	26	1.99
2911458--2911545	26	3.3	26	83	12	108	50	11	10	28	1.71
2911458--2911558	53	1.9	52	84	6	132	49	10	11	27	1.73
2912829--2912881	26	2.0	26	92	0	88	30	22	18	28	1.98
2913303--2913359	25	2.2	25	81	12	62	63	7	7	22	1.44
2913729--2913781	26	2.0	26	96	0	97	26	24	20	28	1.99
2913757--2915213	714	2.0	715	88	2	2174	26	23	23	26	2.00
2915359--2915407	25	1.9	26	87	4	73	24	28	16	30	1.96
2916256--2916308	26	2.0	26	85	0	70	30	24	18	26	1.98
2918047--2918096	26	1.9	26	91	0	82	30	26	18	26	1.98
2914471--2921036	902	7.3	901	85	2	8482	25	24	24	25	2.00
2919852--2919904	26	2.0	26	88	0	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2920753--2920805	26	2.0	26	96	0	97	26	24	20	28	1.99
2921635--2921682	1	48.0	1	93	0	60	91	2	0	6	0.48
2921606--2921678	26	2.8	26	83	2	85	83	5	1	9	0.86
2921603--2921680	27	2.9	27	80	7	86	83	5	1	10	0.86
2921606--2921682	28	2.6	28	79	8	82	84	5	1	9	0.82
2922069--2922109	20	2.0	20	95	0	73	4	21	31	41	1.74
2922073--2922117	20	2.2	20	84	0	54	11	22	33	33	1.89
2922649--2922683	3	11.7	3	100	0	70	68	0	0	31	0.90
2922957--2923072	1	116.0	1	77	0	97	6	0	6	87	0.68
2922958--2923072	20	5.7	19	80	12	122	6	0	6	86	0.69
2923079--2923260	41	4.4	41	91	2	285	32	25	17	23	1.96
2923079--2923260	83	2.2	82	93	1	301	32	25	17	23	1.96
2924634--2924686	26	2.0	26	96	0	97	26	20	24	28	1.99
2926412--2926462	26	2.0	26	96	0	93	29	19	25	25	1.99
2925538--2929767	886	4.7	886	87	5	5372	25	23	25	25	2.00
2927298--2927348	26	2.0	26	96	0	93	29	19	25	25	1.99
2928188--2928240	26	2.0	26	85	0	70	26	16	26	30	1.97
2929081--2929152	26	2.8	25	97	0	126	23	20	29	26	1.99
2930668--2930715	25	1.9	25	91	0	78	27	18	27	27	1.98
2931563--2931615	26	2.0	26	96	0	97	26	20	28	24	1.99
2931826--2932841	512	2.0	514	91	1	1655	27	20	22	29	1.98
2933883--2933934	26	2.0	26	92	0	86	28	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2932337--2939348	904	7.7	904	85	3	8819	25	23	24	26	2.00
2936549--2936601	26	2.0	26	96	0	97	26	20	24	28	1.99
2934785--2939348	945	5.0	901	84	3	5639	25	23	24	25	2.00
2937452--2937530	26	3.0	26	94	0	140	27	18	25	27	1.98
2934785--2939312	925	4.9	911	84	5	5377	25	23	24	25	2.00
2938377--2938427	26	2.0	26	92	0	84	25	17	27	29	1.98
2941610--2941662	26	2.0	26	92	0	88	30	20	22	26	1.98
2942484--2942536	26	2.0	26	96	0	97	26	18	26	28	1.98
2942482--2942816	173	1.9	174	85	1	467	20	27	31	20	1.98
2943564--2943616	26	2.0	26	89	7	81	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129