genome.fa.s24.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  13  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1936797--1936849	26	2.0	26	89	7	81	32	20	20	26	1.98
1937677--1937729	26	2.0	26	96	0	97	26	15	26	32	1.95
1938579--1938631	26	2.0	26	96	0	97	26	18	26	28	1.98
1939471--1939523	26	2.0	26	88	0	79	26	16	24	32	1.97
1926608--1942571	890	17.7	901	81	7	16109	25	24	24	25	2.00
1940375--1940427	26	2.0	26	96	0	97	28	20	24	26	1.99
1941248--1941305	26	2.3	26	87	3	91	25	18	22	32	1.97
1942137--1942189	26	2.0	26	92	0	88	28	18	24	28	1.98
1942614--1942668	26	2.1	27	89	3	85	34	20	25	20	1.96
1942097--1943046	475	2.0	474	88	2	1408	22	24	27	24	2.00
1943504--1943556	26	2.0	26	92	0	88	28	18	24	28	1.98
1943978--1944030	26	2.0	26	92	0	88	30	20	24	24	1.99
1946456--1946505	26	1.9	26	91	0	82	28	14	28	30	1.95
1947349--1947401	26	2.0	26	92	0	88	26	16	26	30	1.97
1944819--1947897	894	3.4	891	86	3	4158	25	23	24	26	2.00
1950433--1950485	26	2.0	26	96	0	97	28	20	24	26	1.99
1951319--1951371	26	2.0	26	92	0	88	26	20	24	28	1.99
1953255--1954704	716	2.0	715	88	2	2142	27	22	23	26	2.00
1955570--1955622	26	2.0	26	88	0	79	28	16	24	30	1.97
1955596--1955963	158	2.3	159	86	2	481	22	29	28	19	1.98
1956632--1956684	26	2.0	26	96	0	97	28	20	26	24	1.99
1956905--1956957	26	2.0	26	92	0	88	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1956545--1957056	273	1.9	274	84	1	686	25	28	27	18	1.98
1957810--1957862	26	2.0	26	96	0	97	28	20	24	26	1.99
1958700--1958752	26	2.0	26	96	0	97	28	20	24	26	1.99
1960415--1960467	26	2.0	26	88	0	79	28	26	18	26	1.98
1961328--1961380	26	2.0	26	96	0	97	28	26	18	26	1.98
1959866--1969304	898	10.6	882	84	5	10179	26	24	23	25	2.00
1963999--1964051	26	2.0	26	88	0	79	26	26	22	24	2.00
1964887--1964939	26	2.0	26	88	0	79	28	26	18	26	1.98
1965787--1965842	26	2.2	26	96	0	103	33	25	14	26	1.94
1966689--1966741	26	2.0	26	100	0	106	26	26	20	26	1.99
1967587--1967639	26	2.0	26	88	0	79	26	28	22	22	1.99
1969154--1969447	144	2.1	142	85	1	399	20	29	29	20	1.98
1969495--1969547	26	2.0	26	92	0	88	30	20	18	30	1.97
1970394--1970446	26	2.0	26	96	0	97	28	26	18	26	1.98
1971511--1973369	900	2.1	898	88	1	2702	25	24	24	25	2.00
1974991--1975067	26	3.0	26	88	0	127	25	28	15	29	1.96
1973402--1980430	898	7.9	898	83	5	8485	25	24	24	25	2.00
1980378--1980430	26	2.0	27	92	3	90	26	24	20	28	1.99
1981109--1981159	26	2.0	26	88	0	75	27	27	15	29	1.96
1982898--1982950	26	2.0	26	92	0	88	28	24	18	28	1.98
1983058--1983110	26	2.0	26	96	0	97	26	26	18	28	1.98
1983954--1987549	894	4.1	895	84	5	4697	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1987464--1987515	25	2.0	26	88	3	79	28	25	21	25	1.99
1989181--1989231	26	2.0	26	96	0	93	29	21	17	31	1.96
1990379--1990429	26	2.0	26	88	0	75	25	27	15	31	1.96
1989937--1990645	369	1.9	367	85	4	980	16	28	28	25	1.97
1991274--1991326	26	2.0	26	100	0	106	26	26	20	26	1.99
1991823--1991875	26	2.0	26	100	0	106	26	26	20	26	1.99
1993543--1993595	26	2.0	26	92	0	88	26	22	20	30	1.98
1991882--1996338	900	5.0	896	87	4	5821	25	24	24	25	2.00
1994443--1994495	26	2.0	26	96	0	97	28	24	20	26	1.99
1995345--1995396	26	2.0	26	96	0	95	28	25	19	26	1.98
1996219--1996270	25	2.0	26	92	3	88	28	25	19	26	1.98
1997905--1999761	899	2.1	896	87	1	2655	25	24	24	25	2.00
2001384--2001460	26	3.0	26	86	0	118	25	28	16	28	1.97
2002662--2006779	896	4.6	894	84	6	5146	25	24	24	25	2.00
2006728--2006779	26	2.0	26	92	7	88	26	25	21	26	1.99
2006049--2007511	733	2.0	733	89	2	2220	26	25	21	26	2.00
2009224--2009276	26	2.0	26	92	0	88	28	24	18	28	1.98
2009385--2009437	26	2.0	26	96	0	97	26	26	18	28	1.98
2011096--2011148	26	2.0	26	85	0	70	26	24	16	32	1.97
2013747--2013798	28	1.9	28	88	7	81	28	25	19	26	1.98
2012883--2015788	891	3.2	884	83	6	3630	24	24	24	25	2.00
2015541--2015593	26	2.0	26	88	0	79	26	20	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2016733--2016783	26	2.0	26	88	0	75	25	27	15	31	1.96
2017617--2017669	26	2.0	26	92	0	88	24	26	18	30	1.98
2018172--2018224	26	2.0	26	89	7	81	30	24	16	28	1.97
2019957--2020009	26	2.0	26	96	0	97	28	26	18	26	1.98
2020865--2020917	26	2.0	26	96	0	97	28	26	18	26	1.98
2021769--2021820	26	2.0	26	96	0	95	28	25	19	26	1.98
2017984--2030902	891	14.4	902	87	3	17214	25	25	24	24	2.00
2022672--2022724	26	2.0	26	96	0	97	28	26	18	26	1.98
2026239--2026317	26	3.0	26	96	0	140	27	25	18	27	1.98
2027167--2027219	26	2.0	26	96	0	97	28	26	18	26	1.98
2028066--2028117	25	2.0	26	92	3	88	28	25	19	26	1.98
2028960--2029012	26	2.0	26	92	0	88	28	24	18	28	1.98
2029870--2029922	26	2.0	26	96	0	97	26	24	20	28	1.99
2030761--2030813	26	2.0	26	96	0	97	28	26	18	26	1.98
2031406--2031620	58	3.7	56	82	15	228	33	13	6	47	1.68
2034387--2034439	26	2.0	26	92	0	88	30	26	16	26	1.97
2032654--2037769	892	5.7	890	85	5	6422	26	24	24	25	2.00
2037071--2037122	26	2.0	26	96	0	95	26	26	17	28	1.97
2038561--2038702	22	7.1	18	68	21	56	65	2	2	29	1.18
2038576--2038712	55	2.5	53	74	12	127	65	3	1	29	1.18
2038628--2038715	27	3.7	23	69	21	56	68	4	1	26	1.16
2039564--2039616	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2041374--2041424	26	2.0	26	88	0	75	29	21	19	29	1.98
2038840--2050906	901	13.5	902	85	3	15493	25	24	24	25	2.00
2043139--2043189	26	2.0	26	92	0	84	29	23	15	31	1.95
2045810--2045861	26	2.0	26	92	7	88	30	25	17	26	1.97
2047615--2047667	26	2.0	26	88	0	79	28	22	18	30	1.98
2048509--2048561	26	2.0	26	88	0	79	26	24	20	28	1.99
2049414--2049466	26	2.0	26	92	0	88	30	24	15	30	1.95
2050305--2050356	26	2.0	26	92	0	86	28	25	17	28	1.97
2051136--2051188	26	2.0	26	85	7	72	28	24	16	30	1.97
2050130--2051741	835	1.9	820	86	3	2266	26	23	24	25	2.00
2051288--2053788	881	2.9	842	85	5	3309	26	25	23	24	2.00
2053762--2053814	26	2.0	26	96	0	97	26	24	20	28	1.99
2053603--2054021	185	2.3	184	87	4	576	21	27	27	24	1.99
2053788--2056947	884	3.5	882	85	5	4099	25	24	24	25	2.00
2057413--2057465	26	2.0	26	92	0	88	30	26	16	26	1.97
2056942--2062572	882	6.4	880	75	11	4453	25	24	24	25	2.00
2058997--2059033	8	4.6	8	86	0	56	0	59	27	13	1.35
2061777--2061829	26	2.0	26	100	0	106	26	22	20	30	1.98
2063196--2063228	8	4.1	8	100	0	66	0	63	24	12	1.28
2062512--2063921	722	1.9	726	88	3	2091	26	24	22	26	2.00
2064099--2064150	26	2.0	26	92	0	86	30	25	17	26	1.97
2065884--2065936	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2067681--2067732	26	2.0	26	92	7	88	26	23	19	30	1.98
2068580--2068639	26	2.4	26	86	5	88	26	21	23	28	1.99
2063250--2069509	904	7.0	900	86	3	8101	25	24	24	25	2.00
2069317--2069673	159	2.2	159	81	2	394	21	28	27	22	1.99
2069717--2072513	897	3.1	892	87	3	3848	26	24	23	24	2.00
2072684--2072762	26	3.0	26	96	0	140	27	25	18	27	1.98
2072512--2072947	211	2.1	211	89	0	665	20	28	27	22	1.99
2074266--2074318	26	2.0	26	92	0	88	28	24	18	28	1.98
2073628--2084034	884	11.8	884	83	5	11991	25	24	24	25	2.00
2077816--2077866	26	2.0	26	100	0	102	27	29	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129