genome.fa.s24.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  41  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5566367--5566419	26	2.0	26	92	0	88	26	26	20	26	1.99
5566567--5576190	902	10.8	899	84	4	11330	26	25	23	25	2.00
5570737--5570767	16	1.9	16	93	0	53	3	48	19	29	1.64
5571820--5571872	26	2.0	26	92	0	88	28	24	20	26	1.99
5570061--5576190	903	6.9	902	83	5	7352	26	24	23	25	2.00
5572711--5572763	26	2.0	26	92	0	88	28	24	18	28	1.98
5573609--5573661	26	2.0	26	88	0	79	28	24	16	30	1.97
5575382--5575434	26	2.0	26	85	0	70	30	22	16	30	1.96
5576132--5579528	869	3.9	864	86	5	4248	26	24	23	25	2.00
5580174--5580226	26	2.0	26	100	0	106	26	26	20	26	1.99
5578633--5580797	726	3.0	725	80	7	2554	27	23	23	25	2.00
5581068--5581117	26	1.9	26	95	0	91	26	24	20	30	1.98
5580050--5583946	895	4.4	895	84	4	5039	25	25	24	25	2.00
5584836--5584885	26	1.9	26	87	0	73	26	28	16	30	1.96
5585735--5585787	26	2.0	26	96	0	97	26	24	20	28	1.99
5583985--5587372	899	3.8	893	83	7	3905	25	24	23	26	2.00
5586161--5586211	24	2.1	24	89	7	77	47	23	13	15	1.82
5589067--5589119	26	2.0	26	96	0	97	28	26	18	26	1.98
5589943--5589995	26	2.0	26	92	7	90	28	26	16	28	1.97
5590840--5590892	26	2.0	26	96	0	97	28	26	18	26	1.98
5591745--5591797	26	2.0	26	92	0	88	26	26	18	28	1.98
5592646--5592698	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5589566--5599319	897	11.0	899	83	4	11743	25	24	24	25	2.00
5596154--5596206	26	2.0	26	92	0	88	28	24	18	28	1.98
5598840--5598892	26	2.0	26	88	0	79	30	24	15	30	1.95
5601290--5601342	26	2.0	26	100	0	106	26	26	20	26	1.99
5600414--5602065	898	1.8	895	87	2	2220	26	24	23	26	2.00
5602913--5602963	26	2.0	26	96	0	93	27	21	21	29	1.99
5604513--5604564	25	2.0	26	92	3	88	26	25	19	28	1.98
5607686--5607716	12	2.6	12	94	0	53	6	64	25	3	1.33
5607900--5607952	26	2.0	26	92	0	88	28	24	18	28	1.98
5611254--5611306	26	2.0	26	92	7	90	26	20	22	30	1.98
5612144--5612196	26	2.0	26	96	0	97	24	26	22	26	2.00
5609495--5614350	892	5.4	896	85	4	6050	25	25	24	25	2.00
5613041--5613098	26	2.2	27	87	3	82	27	25	18	27	1.98
5613947--5614025	26	3.0	26	96	0	140	27	24	18	29	1.98
5614765--5614817	26	2.0	26	100	0	106	26	26	20	26	1.99
5614847--5614951	51	2.1	51	92	0	174	13	26	29	30	1.94
5615688--5615737	26	1.9	26	91	0	82	26	22	20	32	1.98
5616580--5616632	26	2.0	26	88	0	79	24	22	22	30	1.99
5618163--5618197	16	2.2	16	100	0	70	0	5	5	88	0.63
5618276--5618319	1	44.0	1	86	0	61	2	0	4	93	0.42
5618276--5618319	22	2.0	21	95	4	79	2	0	4	93	0.42
5618052--5618425	122	3.1	118	85	6	473	26	12	12	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5618430--5618624	83	2.3	83	92	1	329	33	23	18	24	1.97
5618430--5618624	42	4.7	41	89	2	309	33	23	18	24	1.97
5618627--5618711	42	2.0	41	86	6	118	34	25	17	22	1.96
5618911--5619047	43	3.2	42	76	13	136	34	16	13	36	1.87
5620359--5620413	20	2.8	20	84	13	78	5	12	0	81	0.84
5620370--5620449	22	3.6	22	80	16	85	6	15	1	77	1.02
5620356--5620445	22	4.0	23	77	16	73	7	15	1	75	1.08
5624360--5624812	59	7.7	57	85	7	604	34	12	7	44	1.72
5624458--5624813	124	3.0	120	86	8	419	34	12	8	44	1.72
5624850--5624912	16	3.9	15	76	12	63	77	1	6	14	1.03
5624845--5624930	6	14.3	6	73	17	54	76	1	6	15	1.05
5624876--5624929	27	2.0	28	89	10	85	77	1	7	12	1.05
5624838--5625006	12	14.8	11	68	16	62	73	3	4	17	1.14
5625880--5625952	8	9.0	8	70	19	53	76	1	0	21	0.86
5625880--5625945	25	2.7	24	73	17	64	75	1	0	22	0.88
5625828--5625972	27	5.2	27	73	15	100	69	1	3	25	1.12
5625883--5625951	30	2.4	30	81	13	83	76	1	0	21	0.86
5625880--5625954	23	3.1	23	73	22	66	76	1	0	22	0.87
5625880--5626005	53	2.4	53	80	12	136	69	2	1	26	1.09
5625894--5625972	7	10.7	7	71	15	52	69	1	0	29	0.96
5625985--5626013	11	2.5	12	94	5	51	79	0	0	20	0.74
5626840--5627182	159	2.2	159	87	2	474	20	28	30	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5627156--5627208	26	2.0	26	96	0	97	28	24	20	26	1.99
5628918--5628985	26	2.6	26	97	0	127	29	25	17	27	1.97
5632507--5632557	26	2.0	26	92	0	84	27	25	17	29	1.98
5633415--5633467	26	2.0	26	96	0	97	28	26	18	26	1.98
5627230--5636826	904	10.8	883	85	5	10844	25	24	24	25	2.00
5637714--5637766	26	2.0	26	96	0	97	28	24	20	26	1.99
5638615--5638667	26	2.0	26	96	0	97	26	24	20	28	1.99
5636953--5639184	901	2.5	900	87	2	3167	26	24	23	25	2.00
5639247--5639297	26	2.0	26	92	0	84	29	23	17	29	1.97
5638563--5639798	614	2.0	621	88	4	1832	25	23	24	27	2.00
5641794--5641844	26	2.0	26	96	0	93	29	25	17	27	1.98
5642020--5642071	26	2.0	26	100	0	104	30	23	19	26	1.98
5641718--5642234	226	2.3	226	86	2	716	17	29	27	24	1.97
5642912--5644395	715	2.1	717	87	2	2178	26	24	22	26	2.00
5644527--5644577	26	2.0	26	96	0	93	33	23	15	27	1.95
5644553--5644942	200	2.0	200	85	1	530	17	28	28	25	1.98
5645641--5645693	26	2.0	26	92	7	90	26	22	20	30	1.98
5645667--5647857	712	3.1	714	87	2	3137	26	24	23	25	2.00
5647969--5648021	26	2.0	26	85	0	70	26	26	18	28	1.98
5647092--5649595	902	2.8	902	87	1	3505	26	24	23	25	2.00
5648871--5648923	26	2.0	26	100	0	106	30	26	16	26	1.97
5650521--5654853	720	6.1	716	87	2	5894	26	24	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5655814--5659390	685	5.1	685	88	5	4897	26	24	23	25	2.00
5659495--5659547	26	2.0	26	88	0	79	30	22	20	26	1.98
5660388--5665996	699	7.9	700	88	3	7464	26	24	23	25	2.00
5665274--5665317	8	5.6	8	97	2	81	0	63	27	9	1.24
5666212--5666264	26	2.0	26	96	0	97	28	26	18	26	1.98
5667111--5667163	26	2.0	26	92	0	88	26	22	20	30	1.98
5665340--5667569	898	2.5	896	87	1	3178	25	24	24	25	2.00
5668472--5668524	26	2.0	26	96	0	97	26	28	20	24	1.99
5670274--5670326	26	2.0	26	88	0	79	30	24	16	28	1.97
5671172--5671222	26	2.0	26	96	0	93	29	25	17	27	1.98
5667606--5674643	893	7.9	893	86	3	9321	25	24	23	25	2.00
5672059--5672111	26	2.0	26	96	0	97	30	24	16	28	1.97
5672956--5673008	26	2.0	26	96	0	97	26	20	24	28	1.99
5673850--5673896	24	1.9	25	95	4	87	23	25	23	27	2.00
5674618--5674671	28	1.9	28	88	0	81	25	18	38	16	1.92
5673874--5676170	717	3.2	713	85	6	3119	27	23	23	25	2.00
5678586--5678637	26	2.0	26	92	0	86	25	25	19	30	1.98
5681339--5681391	26	2.0	26	92	0	88	26	26	20	26	1.99
5681763--5681815	26	2.0	26	92	0	88	28	28	18	24	1.98
5681148--5681989	424	2.0	424	85	1	1123	20	26	30	22	1.98
5681572--5700981	902	21.6	904	83	5	22419	25	25	24	25	2.00
5683568--5683620	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5684040--5684090	26	2.0	26	88	0	75	54	13	9	21	1.67
5685372--5685424	26	2.0	26	96	0	97	24	26	22	26	2.00
5688039--5688091	26	2.0	26	88	0	79	30	24	16	28	1.97
5691605--5691655	26	2.0	26	96	0	93	29	25	17	27	1.98
5692504--5692556	26	2.0	26	96	0	97	28	26	18	26	1.98
5693306--5693341	12	3.0	12	100	0	72	8	66	16	8	1.42
5693519--5693571	26	2.0	26	96	0	97	26	24	20	28	1.99
5696158--5696210	26	2.0	26	96	0	97	26	24	20	28	1.99
5697062--5697114	26	2.0	26	96	0	97	28	26	18	26	1.98
5698829--5698879	26	2.0	26	88	7	77	31	27	13	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129