genome.fa.s24.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  83  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13394124--13394285	18	9.2	18	72	21	121	55	1	0	43	1.07
13394120--13394305	31	6.3	30	71	19	149	56	1	0	42	1.06
13394193--13394315	60	2.0	60	87	3	176	59	1	0	38	1.13
13394103--13394291	103	1.9	100	82	11	242	55	1	0	43	1.06
13394394--13394467	9	8.6	9	70	19	59	47	0	0	52	1.00
13394391--13394431	16	2.7	15	85	7	55	46	0	0	53	1.00
13394399--13394466	25	2.7	27	91	8	108	47	0	0	52	1.00
13394399--13394466	26	2.7	24	86	13	100	47	0	0	52	1.00
13397428--13397460	11	3.0	11	86	13	50	63	0	0	36	0.95
13399446--13399506	30	2.0	30	90	0	95	16	14	22	45	1.84
13399476--13399733	139	1.9	139	90	3	421	27	14	23	34	1.94
13401992--13402016	12	2.1	12	100	0	50	64	0	0	36	0.94
13404820--13404868	19	2.6	19	75	12	55	42	14	10	32	1.79
13404903--13404951	24	2.0	26	84	8	66	71	8	2	18	1.21
13408813--13408918	24	4.5	24	76	5	99	48	26	3	21	1.67
13408861--13409046	8	22.8	8	71	9	90	48	26	3	22	1.65
13408813--13409014	16	12.7	16	71	9	126	49	24	3	22	1.67
13408861--13409032	39	4.3	39	69	18	111	50	25	3	21	1.65
13409885--13409933	21	2.3	20	76	10	53	36	10	4	48	1.56
13411443--13411482	3	13.3	3	100	0	80	32	0	0	67	0.91
13411553--13411625	22	3.4	21	78	12	67	9	5	4	80	0.99
13411578--13411627	19	2.8	18	88	8	75	4	8	6	82	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13411573--13411626	28	2.0	27	82	10	65	5	7	3	83	0.91
13412508--13412537	14	2.1	14	93	0	51	13	0	3	83	0.77
13412682--13412723	12	3.4	12	75	18	50	80	0	2	16	0.81
13412682--13412719	18	2.1	18	95	0	67	81	0	2	15	0.80
13416639--13416718	42	1.9	42	86	0	115	36	13	11	38	1.81
13417740--13417773	17	1.9	18	88	5	52	2	11	2	82	0.89
13417778--13417829	20	2.5	21	81	3	61	13	1	13	71	1.24
13417825--13417877	3	17.7	3	84	7	72	28	1	3	66	1.20
13417879--13417917	17	2.3	17	86	8	53	74	2	5	17	1.12
13418194--13418230	3	12.7	3	94	5	67	67	0	0	32	0.91
13421363--13421461	49	2.0	49	96	0	180	47	13	13	26	1.79
13429524--13429550	13	2.1	13	100	0	54	62	7	0	29	1.22
13431226--13431265	19	2.1	19	90	0	62	37	7	7	47	1.60
13431617--13431666	23	2.2	23	89	7	75	42	16	16	26	1.88
13443261--13443287	11	2.5	11	100	0	54	62	0	0	37	0.95
13444091--13444151	33	1.9	32	86	6	88	36	8	22	32	1.84
13444112--13444232	33	3.6	33	80	6	120	44	9	19	26	1.80
13444336--13444465	32	4.0	31	77	9	109	53	10	16	20	1.71
13444371--13444493	32	3.8	32	79	7	115	53	10	16	19	1.71
13444550--13444650	33	3.1	33	81	1	105	57	9	14	17	1.64
13444550--13444632	32	2.6	32	84	1	103	57	10	14	16	1.64
13444640--13444861	59	3.8	58	78	7	225	45	13	18	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13445134--13445194	23	2.7	23	97	0	113	42	9	21	26	1.84
13445126--13445192	18	3.7	18	75	11	57	41	7	22	28	1.80
13445843--13445881	15	2.7	14	85	14	53	12	15	0	71	1.14
13445852--13445908	15	3.7	15	84	15	73	14	12	0	73	1.09
13445852--13445918	9	8.2	9	78	17	51	13	11	0	74	1.07
13445842--13445917	31	2.5	31	77	16	86	13	13	0	73	1.09
13445852--13445909	7	7.5	8	81	18	70	13	12	0	74	1.08
13446799--13446825	10	2.7	10	100	0	54	48	0	18	33	1.49
13450578--13450602	12	2.1	12	100	0	50	32	0	0	68	0.90
13450862--13450930	24	3.0	23	79	8	68	72	4	2	20	1.15
13456459--13456522	6	10.8	6	74	15	53	29	3	1	65	1.17
13456465--13456523	12	4.9	12	76	15	59	28	5	1	64	1.24
13456459--13456522	18	3.6	18	77	10	69	29	3	1	65	1.17
13456685--13456732	22	2.2	22	82	17	57	50	0	0	50	1.00
13456654--13456728	27	2.9	27	69	18	70	52	1	0	46	1.09
13458662--13458726	33	2.0	33	90	6	105	46	4	1	47	1.32
13459367--13459391	2	12.5	2	100	0	50	48	0	0	52	1.00
13459630--13459662	12	2.8	12	90	4	50	0	0	9	90	0.44
13459630--13459661	16	2.0	16	100	0	64	0	0	6	93	0.34
13460273--13460342	35	2.0	35	100	0	140	31	8	17	42	1.79
13466032--13466075	22	2.0	23	86	13	65	40	0	18	40	1.50
13466615--13467071	59	7.7	58	84	7	566	33	13	7	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13466910--13467000	27	3.2	27	63	19	67	36	15	6	41	1.73
13467105--13467163	10	6.1	10	79	16	63	79	0	3	16	0.86
13467098--13467168	17	4.0	17	73	10	61	78	0	4	16	0.90
13467098--13467168	6	11.5	6	74	15	56	78	0	4	16	0.90
13467105--13467226	21	5.4	24	72	18	75	75	3	3	18	1.08
13468045--13468077	6	5.7	6	89	3	50	84	0	0	15	0.61
13468165--13468201	14	2.4	17	86	13	53	75	2	5	16	1.10
13468223--13468311	12	7.4	12	69	19	53	64	6	0	29	1.19
13468248--13468312	16	4.3	15	74	18	55	63	6	0	30	1.19
13468180--13468322	65	2.2	63	78	8	155	63	5	2	28	1.28
13471042--13471079	12	2.8	13	84	15	51	23	2	0	73	0.95
13472252--13472392	68	2.1	68	85	5	187	32	11	13	42	1.80
13472252--13472398	34	4.3	34	81	10	156	33	10	13	42	1.79
13474826--13474864	19	2.0	20	95	5	71	82	5	12	0	0.83
13474829--13474916	22	4.3	18	72	21	59	76	3	15	4	1.09
13474828--13474872	22	2.1	22	91	4	74	84	4	11	0	0.76
13475168--13475224	16	3.7	15	77	13	55	77	3	12	7	1.10
13475301--13475329	2	15.0	2	92	7	51	48	0	0	51	1.00
13478501--13478541	16	2.6	16	80	0	55	21	4	2	70	1.18
13479510--13479568	2	30.0	2	93	3	102	47	0	0	52	1.00
13480029--13480096	29	2.3	29	82	9	77	52	1	5	39	1.34
13480047--13480111	30	2.2	30	86	5	87	56	1	3	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13480338--13480428	3	31.7	3	82	8	100	32	1	4	61	1.23
13480677--13480734	23	2.5	24	86	5	84	37	1	20	39	1.63
13480797--13480844	20	2.3	21	85	3	62	25	2	22	50	1.60
13481177--13481225	13	3.7	13	76	15	55	14	6	2	77	1.05
13481158--13481199	18	2.4	17	88	11	66	11	4	0	83	0.79
13481158--13481228	33	2.2	33	80	16	87	14	5	1	78	0.99
13481175--13481235	27	2.2	27	80	16	72	16	4	3	75	1.11
13482194--13482235	22	1.9	22	85	0	57	4	11	2	80	0.95
13487237--13487414	92	1.9	91	79	3	196	30	16	16	36	1.91
13492440--13492493	15	3.6	16	76	19	53	59	0	0	40	0.98
13492433--13492491	23	2.6	23	74	15	59	61	0	0	38	0.96
13492433--13492495	16	4.1	16	76	12	60	60	0	0	39	0.97
13493203--13493585	131	2.9	129	76	10	371	43	6	10	39	1.65
13493709--13493767	22	2.7	22	86	0	82	35	25	16	22	1.95
13493919--13493943	10	2.5	10	100	0	50	84	8	0	8	0.79
13494016--13494099	30	2.8	30	81	3	98	19	42	8	29	1.80
13498528--13498601	38	2.0	38	86	2	105	40	1	6	51	1.37
13498872--13498904	16	1.9	18	88	11	52	33	6	6	54	1.50
13500145--13500184	2	21.0	2	85	10	57	47	0	2	50	1.14
13500414--13500444	15	2.1	15	100	0	62	0	0	6	93	0.35
13501053--13501121	35	2.0	35	100	0	138	31	8	15	43	1.78
13506820--13506864	22	2.0	23	83	12	58	42	0	17	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13509556--13509593	3	12.7	3	83	10	51	26	0	0	73	0.83
13509556--13509593	18	2.1	18	90	9	60	26	0	0	73	0.83
13510755--13510862	35	3.2	33	75	12	103	33	11	11	44	1.75
13510758--13510886	34	3.8	34	78	6	134	34	10	10	43	1.75
13510758--13510886	69	1.9	69	82	9	165	34	10	10	43	1.75
13513670--13513717	15	3.4	14	83	13	55	79	0	10	10	0.95
13513636--13513709	16	4.8	15	75	16	55	74	2	16	6	1.15
13517569--13517618	27	1.9	25	88	8	73	46	2	0	52	1.12
13518537--13518577	2	21.0	2	90	5	66	46	0	0	53	1.00
13519040--13519103	30	2.2	29	86	8	85	54	0	6	39	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129