genome.fa.s24.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  107  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17797131--17797162	17	1.9	17	93	6	57	56	3	3	37	1.31
17798811--17798850	21	1.9	21	94	0	71	57	17	0	25	1.40
17799995--17800031	15	2.5	15	90	0	56	21	8	21	48	1.76
17800048--17800080	11	3.1	11	82	8	50	54	12	0	33	1.37
17801413--17801453	17	2.4	18	80	12	50	39	4	2	53	1.35
17809934--17809966	17	1.9	17	93	0	57	75	0	9	15	1.03
17815677--17815727	12	4.2	12	78	7	50	78	5	11	3	1.06
17829075--17829499	210	2.0	211	97	0	798	40	9	17	32	1.82
17833942--17833990	22	2.3	22	96	3	91	22	4	32	40	1.73
17837853--17837921	30	2.3	29	82	4	84	53	0	0	46	1.00
17837848--17837906	16	3.9	16	74	12	54	50	0	0	49	1.00
17837867--17837915	14	3.4	14	78	10	53	55	0	0	44	0.99
17839245--17839289	22	2.0	22	86	4	63	51	11	6	31	1.63
17839234--17839289	23	2.5	23	82	2	69	50	8	5	35	1.57
17839299--17839352	28	1.9	28	84	0	72	57	12	9	20	1.63
17839287--17839369	40	2.1	39	81	4	94	57	15	7	19	1.61
17840878--17840932	24	2.3	23	81	9	65	54	16	3	25	1.58
17840927--17841007	38	2.1	40	83	4	103	60	8	8	22	1.53
17840967--17841016	26	1.9	26	84	8	66	56	14	6	24	1.60
17841227--17841277	18	2.9	18	79	2	68	68	13	3	13	1.34
17841228--17841278	5	8.7	6	79	16	54	68	13	3	13	1.34
17841251--17841284	13	2.8	12	82	8	50	76	8	5	8	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17842320--17842362	17	2.6	17	85	10	54	74	4	0	20	1.00
17844849--17844885	18	2.1	18	94	0	65	51	8	21	18	1.72
17851206--17851259	18	3.0	18	86	5	74	75	7	0	16	1.01
17851213--17851272	15	3.7	17	80	10	65	76	5	0	18	0.96
17860271--17860323	14	3.5	15	82	15	65	11	24	3	60	1.47
17864593--17865175	49	12.0	49	78	8	496	28	12	21	37	1.89
17864593--17864963	146	2.6	146	83	9	458	27	11	23	37	1.89
17864623--17864958	96	3.5	96	81	8	380	28	11	23	37	1.89
17864598--17865179	99	6.0	97	77	8	492	28	12	21	38	1.89
17868351--17868405	20	2.7	19	79	20	67	36	0	0	63	0.95
17868806--17868848	20	2.3	19	84	8	52	74	0	16	9	1.06
17868903--17868935	17	1.9	17	93	0	57	24	0	3	72	0.98
17881146--17881198	18	2.8	18	88	8	70	33	0	0	66	0.92
17881155--17881203	11	4.8	11	73	19	52	32	0	0	67	0.91
17885922--17885978	30	1.9	30	96	0	105	49	7	1	42	1.40
17886108--17886204	14	7.2	14	71	18	64	47	3	1	48	1.24
17887116--17887159	20	2.3	18	92	7	70	31	0	2	65	1.05
17887528--17887561	11	3.2	11	91	4	52	29	0	0	70	0.87
17887586--17887615	7	4.3	7	91	0	51	30	0	0	70	0.88
17887694--17887732	10	3.7	10	86	6	51	79	0	0	20	0.73
17887694--17887735	21	2.0	22	85	4	59	76	0	0	23	0.79
17888691--17888738	4	11.8	4	80	12	53	77	0	20	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17888686--17888755	25	2.8	25	81	12	65	78	0	14	7	0.95
17888695--17888746	16	3.2	16	91	2	77	78	0	17	3	0.89
17888738--17888777	14	2.7	14	84	7	53	75	0	2	22	0.93
17888720--17888770	16	3.1	16	86	8	59	78	0	3	17	0.90
17888843--17888894	20	2.6	21	85	14	74	63	1	5	28	1.28
17888938--17888985	22	2.2	21	82	14	53	58	0	0	41	0.98
17890841--17890899	30	2.0	30	83	6	75	45	6	15	32	1.72
17891001--17891035	14	2.6	13	86	8	52	17	2	0	80	0.84
17891355--17891474	65	1.9	63	86	6	170	39	13	13	34	1.83
17891743--17891859	63	1.9	62	82	7	148	37	11	16	35	1.84
17891809--17892527	64	11.2	63	70	15	237	39	11	11	37	1.78
17892000--17892476	126	3.8	125	74	11	361	40	11	12	35	1.80
17892254--17892513	126	2.0	128	82	2	310	40	10	12	36	1.78
17892166--17892589	191	2.2	192	81	4	464	39	10	13	37	1.78
17902120--17902145	2	13.0	2	100	0	52	50	0	50	0	1.00
17904257--17904301	2	22.5	2	86	8	65	53	0	2	44	1.13
17913441--17913467	11	2.5	11	100	0	54	29	0	0	70	0.88
17914817--17914857	18	2.3	18	100	0	82	17	9	4	68	1.35
17915080--17915147	35	1.9	35	93	0	118	20	14	33	30	1.93
17921360--17921417	6	9.7	6	96	0	107	51	15	32	0	1.44
17921660--17921774	21	5.5	21	70	19	71	38	4	9	47	1.56
17921676--17921774	41	2.4	42	77	1	101	40	4	9	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17921763--17921804	22	1.9	22	90	0	66	30	2	9	57	1.44
17922107--17922850	22	33.8	22	69	10	223	38	9	4	47	1.57
17922302--17922364	30	2.1	29	85	8	83	42	14	3	39	1.61
17922339--17922422	43	1.9	44	90	2	134	42	9	1	46	1.44
17925157--17925385	114	2.0	114	87	3	327	40	9	4	45	1.58
17929161--17929203	4	10.8	4	90	9	70	51	0	0	48	1.00
17942395--17942427	17	1.9	17	93	0	57	3	6	3	87	0.71
17942403--17942436	15	2.2	15	89	5	50	5	5	5	82	0.95
17949140--17949181	15	2.9	15	82	3	50	28	0	0	71	0.86
17950380--17950419	21	2.0	20	85	5	53	55	7	2	35	1.42
17950563--17950601	17	2.3	17	86	0	51	46	7	2	43	1.46
17950759--17950790	17	1.9	16	93	6	55	56	0	0	43	0.99
17951204--17951265	31	2.0	31	100	0	124	61	6	0	32	1.21
17951280--17951310	12	2.6	12	89	0	53	48	3	9	38	1.52
17951551--17951593	2	21.5	2	95	0	77	46	0	0	53	1.00
17952964--17952998	16	2.2	16	89	0	52	37	2	0	60	1.12
17953560--17953595	15	2.2	18	85	14	51	38	19	2	38	1.66
17962989--17963018	2	15.0	2	100	0	60	50	0	50	0	1.00
17965778--17965846	30	2.3	31	73	14	74	42	1	0	56	1.08
17969616--17969662	21	2.2	21	92	0	76	46	6	14	31	1.70
17969623--17969666	21	2.1	21	100	0	88	40	4	13	40	1.65
17969626--17969672	21	2.2	21	92	0	76	48	4	14	31	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17970611--17970647	16	2.3	16	95	0	65	29	8	21	40	1.82
17976755--17976946	101	1.9	100	90	3	305	39	12	9	38	1.76
17977640--17977664	7	3.6	7	100	0	50	76	0	0	24	0.80
17979006--17979032	11	2.5	11	100	0	54	74	0	0	25	0.83
17983188--17983250	19	3.3	19	70	24	60	52	12	6	28	1.64
17983188--17983350	34	4.5	36	81	9	165	53	12	5	28	1.60
17983261--17983316	17	3.2	17	73	12	51	58	10	3	26	1.48
17983398--17983464	24	2.8	24	88	0	80	55	8	1	34	1.40
17983406--17983467	24	2.4	27	78	18	85	56	6	1	35	1.35
17984122--17984165	21	2.0	22	95	4	81	25	13	4	56	1.56
17986569--17986611	6	7.2	6	89	0	59	27	0	6	65	1.18
17986569--17986622	24	2.2	25	87	12	76	25	0	9	64	1.23
17990460--17990484	13	1.9	13	100	0	50	88	0	8	4	0.64
17991529--17991577	22	2.2	22	85	0	62	32	4	8	55	1.48
17991501--17991627	46	2.8	47	83	4	143	33	4	12	48	1.62
17991548--17991622	22	3.4	22	70	14	55	34	5	12	48	1.63
17991969--17992036	35	1.9	35	81	0	82	35	10	13	41	1.78
17991987--17992053	17	3.9	17	72	2	53	32	7	16	43	1.76
17992007--17992105	17	5.8	17	71	7	65	40	8	12	39	1.72
17992068--17992105	18	2.1	18	90	0	58	47	7	7	36	1.62
17992119--17992185	32	2.1	32	83	8	82	35	5	11	46	1.65
17992188--17992311	35	3.6	35	89	6	182	37	18	13	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17992255--17992313	17	3.4	17	67	4	55	35	20	13	30	1.91
17992319--17992372	27	2.0	28	92	3	92	40	16	9	33	1.80
17992807--17992852	6	7.8	6	87	4	67	28	0	4	67	1.10
17992808--17992844	11	3.3	11	88	7	56	29	0	2	67	1.04
17992788--17992850	29	2.2	29	82	0	72	26	0	9	63	1.25
18009309--18009352	2	21.0	2	93	4	70	47	2	2	47	1.27
18017095--18017128	13	2.8	12	82	8	50	44	0	2	52	1.16
18019359--18019390	15	2.1	16	94	5	57	84	6	6	3	0.86
18021967--18021999	2	16.5	2	100	0	66	51	0	0	48	1.00
18023191--18023247	23	2.3	24	85	14	73	43	1	1	52	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129