genome.fa.s24.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  22  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3048692--3048867	29	6.1	28	74	17	116	72	1	2	24	1.03
3048763--3048918	6	25.0	6	69	19	63	71	1	1	25	1.03
3048771--3048913	22	6.5	21	68	16	78	70	2	1	25	1.06
3048693--3048867	58	2.9	58	79	13	169	72	1	2	24	1.04
3048738--3048917	46	3.9	46	74	15	140	71	1	1	25	1.04
3048741--3048931	14	13.8	13	67	19	61	71	1	2	24	1.08
3051550--3051602	26	2.0	26	92	0	88	28	24	18	28	1.98
3052415--3054462	710	2.9	716	88	2	3065	27	23	22	26	2.00
3055554--3055606	26	2.0	26	96	0	97	28	26	18	26	1.98
3053795--3058451	894	5.1	889	78	11	4367	25	24	23	26	2.00
3058311--3058360	26	1.9	26	95	0	91	22	26	24	28	1.99
3060858--3060910	26	2.0	26	96	0	97	26	24	20	28	1.99
3065261--3065313	26	2.0	26	100	0	106	26	22	20	30	1.98
3060523--3070218	895	11.1	888	83	7	10703	26	24	24	25	2.00
3072534--3072812	57	4.7	57	84	10	373	33	12	7	45	1.72
3072696--3072810	59	2.0	58	87	5	169	36	13	8	41	1.75
3072534--3072813	121	2.4	118	86	7	399	33	12	7	45	1.71
3072848--3072987	5	27.4	5	70	19	51	74	3	4	17	1.13
3072851--3072912	16	3.8	16	84	2	79	77	1	6	14	1.04
3072838--3072924	32	2.7	32	82	8	104	74	1	8	16	1.10
3072876--3072929	27	2.0	28	89	10	85	77	1	7	12	1.05
3072838--3072989	10	13.9	11	68	20	63	74	3	4	17	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3073805--3073843	20	2.0	20	84	0	51	69	0	7	23	1.14
3073862--3073916	22	2.6	22	77	5	60	72	1	0	25	0.94
3073888--3073935	16	2.9	17	81	12	64	79	4	0	16	0.89
3073892--3073932	15	2.8	15	85	10	50	80	4	0	14	0.87
3073863--3073966	52	1.9	55	83	11	135	70	1	0	27	0.98
3073979--3074007	11	2.5	12	94	5	51	79	0	0	20	0.74
3074172--3074213	7	5.7	7	83	10	57	0	0	11	88	0.53
3074171--3074213	8	5.6	8	83	10	63	0	0	11	88	0.52
3074170--3074213	23	2.0	23	95	4	81	0	0	11	88	0.51
3074286--3074333	10	4.7	10	77	12	53	2	6	6	85	0.81
3074163--3074559	121	3.2	122	85	7	509	24	12	12	50	1.75
3074411--3074454	1	44.0	1	86	0	52	4	0	4	90	0.53
3074408--3074432	13	1.9	13	100	0	50	16	0	0	84	0.63
3074564--3074841	41	6.7	41	97	1	502	33	24	19	22	1.97
3074564--3074841	84	3.4	82	96	2	502	33	24	19	22	1.97
3074816--3074869	28	1.9	28	96	0	99	29	35	14	20	1.93
3074844--3074928	41	2.0	42	95	2	154	32	24	18	23	1.97
3074774--3074910	69	2.0	70	95	1	249	32	28	16	21	1.96
3075128--3075264	43	3.2	42	76	13	136	34	16	13	36	1.87
3075448--3075506	22	2.7	22	81	7	66	32	18	10	38	1.84
3076578--3076628	8	5.8	9	80	11	61	5	13	0	80	0.89
3076576--3076661	19	4.2	20	80	10	93	6	16	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3080536--3080570	14	2.6	14	90	4	54	65	20	0	14	1.26
3080602--3080887	59	4.7	56	79	14	275	33	12	8	45	1.74
3080641--3080880	124	1.9	123	89	4	367	32	12	8	45	1.73
3080641--3080889	122	2.0	122	87	5	360	31	12	8	47	1.71
3080974--3081058	16	5.1	16	68	25	52	71	5	2	20	1.18
3083117--3083175	31	1.9	31	82	0	73	37	23	15	23	1.93
3083512--3083673	30	5.6	27	71	17	103	70	0	3	25	1.05
3083565--3083673	4	28.8	4	70	20	65	73	0	0	25	0.89
3083503--3083671	27	5.6	30	74	21	108	71	1	2	24	1.08
3083568--3083642	22	3.3	23	74	17	77	78	1	0	20	0.82
3083686--3083720	16	2.1	17	94	5	63	77	0	0	22	0.78
3084027--3085457	717	2.0	716	87	2	2097	26	23	24	25	2.00
3084744--3087028	865	2.6	865	85	6	2921	25	24	24	25	2.00
3086520--3086569	26	1.9	26	95	0	91	24	24	22	30	1.99
3090388--3090437	26	1.9	26	100	0	100	24	26	22	28	1.99
3088614--3095520	892	7.8	900	84	5	8381	25	24	23	25	2.00
3092171--3092225	26	2.1	27	89	3	85	21	25	18	34	1.96
3093944--3093996	26	2.0	26	88	0	79	30	22	18	28	1.98
3093066--3095372	893	2.6	890	86	3	3054	26	24	23	25	2.00
3095593--3095670	26	3.0	26	88	0	120	30	24	16	28	1.97
3095648--3101747	879	6.9	877	76	10	5460	26	24	23	25	2.00
3097405--3097507	26	4.0	25	92	2	161	24	26	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3102626--3102678	26	2.0	26	100	0	106	26	26	20	26	1.99
3101856--3106820	903	5.7	881	83	6	5675	26	24	23	25	2.00
3103529--3103581	26	2.0	26	96	0	97	26	24	20	28	1.99
3104204--3104234	12	2.6	12	94	0	53	3	74	19	3	1.10
3106861--3110568	907	4.1	900	86	3	4977	25	25	24	24	2.00
3110322--3110374	26	2.0	26	92	0	88	30	24	18	26	1.98
3109763--3111382	814	2.0	811	84	4	2136	25	24	24	25	2.00
3111651--3111703	26	2.0	26	92	0	88	24	28	20	26	1.99
3113174--3113257	4	20.8	4	74	16	57	70	1	0	28	0.95
3113159--3113219	21	2.9	21	82	4	70	70	1	0	27	0.97
3113270--3113303	11	3.1	11	87	12	52	79	0	0	20	0.73
3113270--3113303	16	2.1	17	94	5	61	79	0	0	20	0.73
3113570--3113609	1	40.0	1	92	0	62	0	2	2	95	0.34
3113492--3113852	123	2.9	123	86	5	496	26	13	11	48	1.76
3113687--3113732	1	46.0	1	91	0	74	2	0	2	95	0.30
3113856--3114176	42	7.7	41	87	4	464	34	23	17	23	1.96
3113856--3114176	83	3.9	83	88	3	477	34	23	17	23	1.96
3113856--3114263	125	3.4	124	85	7	513	34	24	17	23	1.96
3114151--3114204	28	1.9	28	88	0	81	29	37	12	20	1.90
3114109--3114245	69	2.0	70	94	1	240	32	28	16	22	1.95
3114179--3114263	41	2.0	41	90	2	134	32	25	17	23	1.97
3114463--3114599	43	3.2	42	76	13	136	34	16	13	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3114783--3114841	22	2.7	22	84	7	75	33	18	8	38	1.81
3115908--3115955	19	2.7	19	87	9	66	6	18	0	75	1.01
3115921--3115996	11	7.2	11	68	18	54	6	18	0	75	1.02
3115921--3115996	19	3.7	19	76	23	82	6	18	0	75	1.02
3119909--3120365	57	7.8	57	85	8	587	34	12	8	45	1.72
3119909--3120368	117	3.9	115	85	9	606	34	11	8	44	1.73
3120384--3120441	16	3.5	17	78	19	61	75	0	8	15	1.02
3120399--3120453	16	3.5	15	78	11	58	78	1	7	12	1.04
3120388--3120432	23	1.9	24	86	13	67	75	0	8	15	1.03
3120422--3120475	27	2.0	28	89	10	85	77	1	7	12	1.05
3120389--3120470	32	2.5	32	84	7	94	75	1	8	14	1.09
3120498--3120548	4	12.5	4	78	12	50	76	5	0	17	0.98
3120509--3120548	12	3.2	12	96	3	71	77	7	0	15	0.98
3120400--3120552	25	6.0	25	73	17	77	73	4	3	17	1.15
3120968--3121038	31	2.3	31	82	0	79	39	23	14	22	1.91
3121425--3121578	6	24.0	6	70	20	57	71	1	1	25	1.04
3121420--3121529	4	29.0	4	69	20	58	72	0	0	26	0.90
3121425--3121495	16	4.3	17	75	15	69	77	1	0	21	0.85
3121424--3121498	22	3.3	23	72	22	70	77	1	0	21	0.85
3121420--3121529	53	2.1	53	82	16	131	72	0	0	26	0.90
3121353--3121578	12	19.0	11	66	18	64	71	1	2	24	1.09
3121402--3121591	14	13.8	13	66	22	63	71	1	2	24	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3124368--3124417	26	1.9	26	95	0	91	24	24	22	30	1.99
3126462--3132270	877	6.5	893	83	6	6829	25	24	24	25	2.00
3128246--3128298	26	2.0	26	100	0	106	26	26	20	26	1.99
3129145--3129213	26	2.7	26	100	0	138	18	27	24	28	1.98
3130058--3130112	26	2.1	27	89	3	85	25	23	18	32	1.97
3132402--3132474	26	2.8	26	89	0	119	28	26	16	28	1.97
3134209--3134311	26	4.0	25	87	2	143	25	25	19	30	1.98
3134209--3134313	52	2.0	52	88	3	158	25	24	20	29	1.99
3135151--3135203	26	2.0	26	88	0	79	30	24	16	28	1.97
3136055--3136107	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129