genome.fa.s24.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  8  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1321516--1329367	870	8.9	874	85	5	9388	25	25	24	25	2.00
1324491--1324543	26	2.0	26	92	0	88	28	24	18	28	1.98
1325384--1325434	26	2.0	26	92	0	84	31	25	15	27	1.96
1326274--1326326	26	2.0	26	88	0	79	30	24	16	28	1.97
1323616--1329367	891	6.4	899	86	4	7549	25	24	24	25	2.00
1327180--1327232	26	2.0	26	88	0	79	26	24	18	30	1.98
1328948--1329000	26	2.0	26	92	0	88	26	22	20	30	1.98
1329654--1329706	26	2.0	26	100	0	106	30	26	16	26	1.97
1328673--1330053	706	2.0	686	85	5	1850	21	26	25	26	1.99
1330517--1330569	26	2.0	26	100	0	106	26	26	20	26	1.99
1331416--1331468	26	2.0	26	96	0	97	26	33	13	26	1.93
1332303--1332355	26	2.0	26	88	0	79	26	24	22	26	2.00
1332871--1332930	29	2.1	29	100	0	120	33	11	21	33	1.90
1333239--1333291	26	2.0	26	100	0	106	26	26	20	26	1.99
1334144--1334196	26	2.0	26	100	0	106	26	26	20	26	1.99
1336815--1336867	26	2.0	26	100	0	106	26	22	20	30	1.98
1337708--1337760	26	2.0	26	96	0	97	28	24	20	26	1.99
1329778--1348853	901	21.5	897	83	5	22750	25	24	23	25	2.00
1340378--1340430	26	2.0	26	92	0	88	30	26	18	24	1.98
1342106--1342158	26	2.0	26	85	0	70	30	22	15	32	1.94
1344688--1344739	26	2.0	26	88	0	77	28	26	17	26	1.97
1346451--1346505	26	2.1	26	89	0	83	36	23	9	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1347337--1347389	26	2.0	26	85	7	72	32	24	18	24	1.97
1350479--1352429	733	2.7	717	86	4	2606	28	22	22	27	1.99
1352634--1352686	26	2.0	26	92	0	88	26	26	20	26	1.99
1353058--1353110	26	2.0	26	85	0	70	32	28	16	22	1.96
1355600--1355650	26	2.0	26	100	0	102	25	27	19	27	1.99
1356495--1356545	26	2.0	26	96	0	93	23	27	19	29	1.98
1353800--1367001	896	14.7	899	86	3	16965	25	24	24	25	2.00
1360964--1361014	26	2.0	26	92	0	84	27	25	19	27	1.99
1361864--1361916	26	2.0	26	96	0	97	28	26	18	26	1.98
1362762--1362814	26	2.0	26	96	0	97	26	26	18	28	1.98
1363658--1363709	26	2.0	26	92	0	86	28	25	17	28	1.97
1364561--1364612	26	2.0	26	92	0	86	25	28	21	25	1.99
1366368--1366420	26	2.0	26	96	0	97	28	26	18	26	1.98
1367479--1367699	57	3.8	58	93	3	374	33	12	9	44	1.74
1367715--1367766	15	3.4	14	82	12	59	76	0	7	15	0.99
1367755--1367810	21	2.5	23	77	8	62	73	1	8	16	1.17
1367832--1367881	4	12.5	4	78	16	50	78	4	0	18	0.91
1367832--1367889	28	2.1	28	87	6	82	81	3	0	15	0.83
1367835--1367884	24	2.1	24	89	10	77	80	4	0	16	0.87
1368729--1368770	21	2.0	22	85	4	59	66	0	7	26	1.17
1368755--1368850	26	3.4	29	66	24	71	69	2	0	28	0.99
1368866--1368894	11	2.5	12	94	5	51	79	0	0	20	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1369161--1369194	9	3.8	9	84	0	50	0	5	5	88	0.64
1369161--1369195	10	3.7	10	85	14	56	0	5	5	88	0.63
1369153--1369194	18	2.3	18	91	0	66	2	7	4	85	0.80
1369161--1369196	18	2.0	18	100	0	72	0	5	5	88	0.61
1369082--1369349	123	2.3	120	83	9	342	27	15	12	44	1.82
1369274--1369316	1	43.0	1	95	0	77	0	0	2	97	0.16
1369343--1369413	36	2.0	36	94	2	126	38	19	18	23	1.93
1369390--1369470	26	3.0	26	89	3	108	33	32	14	19	1.92
1369398--1369477	28	2.9	27	87	3	99	31	32	15	21	1.94
1369416--1369587	69	2.5	69	98	0	326	31	27	16	23	1.96
1369493--1369546	28	1.9	28	96	0	99	29	35	14	20	1.93
1369521--1369606	41	2.1	42	93	2	147	32	23	18	25	1.97
1369804--1369940	43	3.2	42	76	13	136	34	16	13	36	1.87
1370066--1370100	18	1.9	18	88	0	52	37	14	5	42	1.69
1370124--1370182	22	2.7	22	84	7	75	33	18	8	38	1.81
1371271--1371308	10	3.8	10	85	0	58	2	13	0	84	0.73
1371263--1371337	20	3.7	20	78	16	82	6	17	0	76	1.00
1371250--1371304	19	3.1	18	85	12	69	5	16	0	78	0.93
1371284--1371341	31	1.9	31	85	3	82	8	20	0	70	1.13
1374784--1374834	26	2.0	26	92	0	84	27	19	27	25	1.99
1375679--1375731	26	2.0	26	92	0	88	24	18	28	28	1.98
1378315--1378367	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1381827--1381879	26	2.0	26	96	0	97	26	18	26	28	1.98
1380561--1383082	902	2.8	891	83	5	3073	25	24	25	24	2.00
1385544--1385596	26	2.0	26	88	0	79	30	18	22	28	1.98
1387347--1387399	26	2.0	26	96	0	97	26	18	26	28	1.98
1384796--1392724	899	8.9	896	85	4	9959	25	24	24	25	2.00
1388246--1388298	26	2.0	26	92	0	88	26	16	26	30	1.97
1390860--1390912	25	2.1	26	92	3	90	28	18	26	26	1.98
1391764--1391814	26	2.0	26	100	0	102	27	19	27	25	1.99
1389927--1392729	891	3.1	891	86	4	3937	25	24	24	25	2.00
1392663--1392715	26	2.0	26	96	0	97	24	22	26	26	2.00
1393498--1393550	26	2.0	26	92	0	88	30	20	22	26	1.98
1395275--1395325	26	2.0	26	96	0	93	27	17	25	29	1.98
1396168--1396220	26	2.0	26	92	0	88	24	18	28	28	1.98
1399739--1399791	26	2.0	26	96	0	97	24	20	28	26	1.99
1394401--1400762	895	7.1	897	85	4	8016	25	24	25	25	2.00
1400634--1400684	26	2.0	26	96	0	93	29	19	23	27	1.98
1400762--1403374	890	2.9	883	86	4	3424	25	23	24	26	2.00
1402867--1402891	12	2.1	12	100	0	50	8	28	64	0	1.22
1403212--1403254	21	2.0	21	100	0	86	37	9	18	34	1.83
1402915--1403823	469	2.0	452	87	6	1328	28	17	21	33	1.96
1403994--1404045	26	2.0	26	92	0	86	28	21	26	23	1.99
1405722--1405825	26	4.0	26	92	1	165	26	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1405733--1405842	52	2.1	52	81	3	123	29	20	23	27	1.99
1408023--1408073	26	2.0	26	92	0	84	27	25	19	27	1.99
1408918--1408970	26	2.0	26	96	0	97	28	26	18	26	1.98
1407381--1411245	896	4.3	893	86	4	5172	26	25	23	25	2.00
1409814--1409866	26	2.0	26	96	0	97	26	26	18	28	1.98
1410709--1410760	26	2.0	26	92	0	86	28	25	17	28	1.97
1414685--1414737	26	2.0	26	88	0	79	30	24	16	28	1.97
1413808--1415887	887	2.3	892	84	4	2680	25	24	24	25	2.00
1415889--1420804	906	5.6	856	82	8	5367	25	25	24	25	2.00
1418970--1419022	26	2.0	26	92	0	88	30	26	16	26	1.97
1419877--1419927	26	2.0	26	100	0	102	33	27	11	27	1.92
1420628--1421044	185	2.3	185	88	2	633	21	25	28	23	1.99
1421508--1421560	26	2.0	26	92	0	88	28	26	20	24	1.99
1422412--1422464	26	2.0	26	96	0	97	26	24	20	28	1.99
1423308--1423360	26	2.0	26	88	0	79	30	24	16	28	1.97
1424209--1424261	26	2.0	26	92	0	88	28	24	18	28	1.98
1421237--1424979	901	4.2	901	84	4	4675	25	24	24	24	2.00
1424953--1425003	26	2.0	26	92	0	84	27	25	17	29	1.98
1426354--1426404	26	2.0	26	100	0	102	31	25	15	27	1.96
1427217--1427266	26	1.9	26	87	0	73	26	20	24	30	1.98
1425318--1430689	873	6.1	879	84	6	6258	25	24	23	25	2.00
1432223--1432275	26	2.0	26	88	0	79	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431352--1433914	902	2.8	897	87	2	3590	26	24	23	25	2.00
1434716--1434768	26	2.0	26	96	0	97	28	26	18	26	1.98
1435616--1435668	26	2.0	26	96	0	97	28	26	18	26	1.98
1437400--1437452	26	2.0	26	88	0	79	28	26	20	24	1.99
1433859--1438190	886	4.8	890	86	4	5794	25	24	24	25	2.00
1438925--1438981	26	2.3	26	78	6	64	28	21	15	35	1.94
1439820--1439872	26	2.0	26	92	0	88	24	24	22	28	2.00
1438435--1440958	890	2.8	891	88	4	3645	25	24	24	25	2.00
1440716--1440768	26	2.0	26	96	0	97	28	24	20	26	1.99
1440716--1441198	240	2.0	245	82	3	602	19	22	33	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129