genome.fa.s24.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  93  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15215289--15215336	14	3.3	15	85	8	64	62	6	0	31	1.20
15215491--15215521	13	2.3	14	94	5	55	41	25	0	32	1.56
15219515--15219630	50	2.3	49	82	10	128	32	10	3	53	1.52
15219756--15219802	24	1.9	25	86	4	69	29	6	8	55	1.55
15220906--15220946	8	5.2	8	88	5	66	12	0	2	85	0.70
15220906--15220946	15	2.6	16	88	7	66	12	0	2	85	0.70
15227886--15227923	14	2.8	14	84	4	51	28	5	2	63	1.30
15229856--15229947	32	2.8	31	79	12	87	53	6	1	39	1.34
15230057--15230113	28	2.0	28	82	0	69	61	5	1	31	1.28
15232396--15232469	30	2.5	30	80	10	98	48	4	8	39	1.52
15233274--15233311	18	2.1	18	95	0	67	57	0	0	42	0.98
15233277--15233318	18	2.3	18	87	0	57	61	0	0	38	0.96
15235551--15235594	20	2.2	20	84	8	54	45	0	2	52	1.13
15235748--15235831	25	3.5	24	67	14	66	67	2	0	29	1.03
15236089--15236113	13	1.9	13	100	0	50	36	0	0	64	0.94
15241953--15242104	79	1.9	78	86	5	218	48	12	17	21	1.79
15245066--15245112	19	2.5	19	86	6	60	31	2	6	59	1.34
15245496--15245529	16	2.1	17	88	5	52	58	20	0	20	1.39
15247063--15247096	9	3.8	9	84	0	50	55	11	0	32	1.36
15247333--15247381	11	4.3	11	82	7	53	42	2	0	55	1.11
15255471--15255512	15	2.7	16	85	7	59	50	4	0	45	1.23
15256069--15256811	371	2.0	371	100	0	1486	35	18	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15258036--15258086	26	2.0	25	84	3	66	49	7	0	43	1.32
15262551--15262610	20	2.9	20	80	11	59	48	1	1	48	1.21
15263185--15263218	18	1.9	17	88	5	50	58	0	0	41	0.98
15273060--15273089	2	15.5	2	93	6	53	50	0	0	50	1.00
15273089--15273119	2	15.5	2	93	0	53	51	45	0	3	1.17
15273226--15273250	11	2.3	11	100	0	50	44	0	0	56	0.99
15274427--15274459	2	17.0	2	93	6	59	48	0	0	51	1.00
15277680--15277728	14	3.4	14	83	11	64	73	0	0	26	0.83
15277683--15277738	14	4.0	14	77	9	60	75	0	0	25	0.81
15277703--15277742	21	2.0	20	85	5	53	72	0	0	27	0.85
15277682--15277744	25	2.5	25	76	16	67	73	0	0	26	0.84
15277683--15277736	28	2.0	28	88	3	83	75	0	0	24	0.80
15280411--15280444	2	17.0	2	87	0	50	50	5	0	44	1.26
15285708--15285760	18	3.0	17	83	10	63	49	7	1	41	1.42
15288981--15289045	25	2.8	24	82	15	82	44	7	4	43	1.53
15289409--15289455	20	2.3	20	96	0	85	21	8	29	40	1.83
15290119--15290153	17	2.1	17	88	0	52	51	2	17	28	1.59
15290285--15290332	14	3.3	14	77	11	51	39	0	2	58	1.10
15290282--15290346	30	2.2	30	85	0	85	43	0	1	55	1.09
15291399--15291445	18	2.5	19	75	10	51	36	4	2	57	1.30
15302013--15302048	15	2.4	15	90	0	54	36	27	2	33	1.72
15308478--15308516	11	3.5	11	82	0	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15321098--15321155	10	5.8	10	87	0	71	1	51	0	46	1.11
15321098--15321155	4	14.5	4	88	0	71	1	51	0	46	1.11
15321106--15321161	10	5.8	10	87	8	53	1	55	1	41	1.21
15322606--15322652	2	24.5	2	85	8	62	0	44	4	51	1.21
15324594--15324654	32	1.9	32	83	6	79	59	9	3	27	1.45
15325438--15325462	13	1.9	13	100	0	50	92	0	8	0	0.40
15326488--15326528	17	2.4	18	80	12	50	34	2	4	58	1.32
15336074--15336397	160	2.0	160	98	0	621	41	17	19	21	1.90
15342397--15342421	8	3.1	8	100	0	50	36	12	40	12	1.79
15347728--15347766	20	2.0	20	85	10	53	41	10	0	48	1.37
15361052--15361198	74	2.0	75	93	4	253	23	15	27	33	1.95
15365363--15365656	147	2.0	147	94	0	516	37	24	10	26	1.89
15366250--15366283	2	17.0	2	100	0	68	0	50	0	50	1.00
15378858--15378897	19	2.0	20	90	9	64	35	0	5	60	1.19
15378867--15378933	25	2.8	24	86	8	91	29	1	5	62	1.28
15381578--15381634	27	2.1	27	87	3	80	47	14	8	29	1.74
15381930--15381972	3	14.3	3	100	0	86	67	0	0	32	0.91
15397020--15397063	3	14.7	3	90	0	70	63	0	36	0	0.95
15398677--15398727	21	2.3	23	83	12	72	29	0	0	70	0.87
15403638--15403862	112	2.0	112	96	0	414	19	20	19	41	1.90
15413935--15413985	26	2.0	25	81	14	59	35	7	13	43	1.73
15414056--15414101	23	2.1	21	84	8	56	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15414054--15414110	26	2.2	26	81	12	64	35	1	0	63	1.05
15414239--15414288	11	4.4	11	80	7	55	54	4	0	42	1.19
15422205--15422235	2	15.5	2	100	0	62	48	0	0	51	1.00
15423999--15424074	35	2.2	34	82	15	86	39	1	0	59	1.06
15426341--15426366	2	13.0	2	100	0	52	50	0	0	50	1.00
15427168--15427193	2	13.0	2	100	0	52	50	0	0	50	1.00
15436477--15436538	30	2.1	30	81	3	72	48	1	3	46	1.28
15438807--15438836	2	15.0	2	100	0	60	50	0	50	0	1.00
15440577--15440612	16	2.1	18	90	10	58	69	0	2	27	1.02
15440781--15440809	7	4.3	7	91	8	51	86	0	0	13	0.58
15440781--15440815	13	2.7	13	95	0	61	85	2	0	11	0.69
15457615--15457672	31	1.9	30	82	3	71	50	1	0	48	1.11
15457593--15457674	36	2.3	37	85	8	107	48	1	1	48	1.17
15457857--15457908	18	2.7	19	76	8	61	42	1	1	53	1.23
15464726--15464751	10	2.6	10	100	0	52	42	0	7	50	1.31
15471159--15471215	27	2.1	27	83	6	71	21	0	5	73	1.02
15472168--15472228	21	2.6	22	73	16	52	27	6	4	60	1.42
15482299--15482405	55	1.9	55	90	0	169	23	15	13	47	1.81
15483550--15483586	3	12.7	3	94	5	67	64	0	0	35	0.94
15485363--15485388	3	8.7	3	100	0	52	69	0	30	0	0.89
15491279--15491360	6	13.7	6	71	19	64	63	0	1	35	1.02
15491258--15491363	41	2.6	40	83	5	124	62	0	0	36	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15491280--15491361	13	6.2	13	72	18	71	64	0	1	34	1.01
15491280--15491363	41	2.1	41	88	2	125	65	0	1	33	1.00
15492908--15492938	16	1.9	16	93	0	53	29	0	0	70	0.87
15494430--15494500	23	3.1	23	69	18	58	46	0	2	50	1.16
15496493--15496551	18	3.3	18	85	0	82	38	11	37	11	1.79
15496508--15496548	15	2.7	15	80	0	55	36	12	36	14	1.84
15496514--15496575	27	2.3	27	80	0	70	38	8	38	14	1.76
15496631--15496679	12	4.1	12	78	0	53	36	12	40	10	1.77
15507964--15508120	52	3.0	53	85	7	205	26	24	8	40	1.84
15508145--15508175	11	2.8	11	100	0	62	51	29	0	19	1.47
15508998--15509154	52	3.0	52	82	5	192	26	24	8	40	1.84
15509179--15509209	11	2.8	11	100	0	62	51	29	0	19	1.47
15517210--15517250	17	2.7	15	82	17	50	65	0	4	29	1.13
15532817--15532861	23	2.0	23	86	8	65	68	0	31	0	0.89
15535272--15535319	21	2.3	21	82	10	55	58	0	8	33	1.28
15537295--15537334	21	1.9	21	100	0	80	20	25	15	40	1.90
15565776--15565839	26	2.5	26	76	0	65	46	1	7	43	1.42
15566135--15566176	9	4.8	9	88	5	68	73	2	0	23	0.94
15566138--15566174	17	2.2	17	95	0	65	75	2	0	21	0.92
15566133--15566192	26	2.3	27	82	8	79	73	1	1	23	1.01
15566499--15566536	20	1.9	20	88	0	58	60	13	7	18	1.56
15567044--15567085	4	10.8	4	84	5	59	71	0	4	23	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15567044--15567085	16	2.7	15	88	3	66	71	0	4	23	1.05
15567381--15567749	45	8.3	43	74	14	220	44	12	10	32	1.75
15567381--15567799	45	9.5	43	73	13	203	45	12	10	31	1.75
15567484--15567613	43	3.2	41	84	10	151	47	8	10	33	1.67
15567484--15567743	84	3.0	84	78	10	231	44	12	10	32	1.77
15567480--15567768	90	3.3	90	77	7	274	44	12	10	31	1.76
15567589--15567796	90	2.3	87	78	8	229	45	14	9	30	1.77
15568362--15568394	11	3.0	11	90	0	57	27	6	0	66	1.15
15576202--15576268	8	7.6	9	75	20	52	8	8	0	82	0.86
15576202--15576268	16	3.7	19	80	13	63	8	8	0	82	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129