genome.fa.s24.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  49  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6928854--6928896	10	4.1	10	82	8	50	81	0	11	6	0.87
6928854--6928935	30	2.8	29	76	8	87	75	0	14	9	1.04
6931739--6931780	11	3.8	11	87	0	66	19	0	30	50	1.48
6931738--6931780	22	2.0	22	95	0	77	20	0	30	48	1.50
6931805--6931950	52	2.8	52	84	2	168	43	7	21	27	1.80
6932751--6932792	22	2.0	22	85	4	59	61	0	7	30	1.22
6935229--6935263	15	2.3	15	90	0	52	62	14	5	17	1.49
6944856--6945233	185	2.0	183	85	5	503	33	18	13	33	1.90
6944559--6945515	477	2.0	480	81	7	1121	32	16	15	35	1.91
6945295--6945331	17	2.2	17	90	0	56	24	0	27	48	1.51
6945028--6945611	310	1.9	309	86	2	841	32	16	15	35	1.90
6948886--6948935	21	2.4	21	74	16	50	20	8	6	66	1.40
6949769--6949902	62	2.2	63	82	10	161	35	11	14	38	1.82
6949953--6950210	124	2.1	125	85	2	358	34	12	18	35	1.88
6949991--6950210	62	3.6	63	72	11	186	33	12	18	35	1.88
6953776--6953820	24	1.9	24	86	4	65	20	8	4	66	1.36
6955092--6955152	22	2.8	22	80	14	72	31	9	24	34	1.88
6955115--6955742	104	6.0	105	73	9	467	34	14	15	35	1.88
6956048--6956088	18	2.3	18	86	0	55	46	17	14	21	1.84
6957111--6957144	11	3.1	11	91	0	50	8	8	0	82	0.85
6957117--6957147	11	2.8	11	95	0	53	12	3	0	83	0.75
6957288--6957331	19	2.3	19	84	11	54	0	15	4	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6957745--6957773	8	3.8	8	95	4	51	10	0	0	89	0.48
6963034--6963058	11	2.3	11	100	0	50	0	20	0	80	0.72
6967029--6968052	161	6.4	160	82	1	958	31	9	15	43	1.79
6967113--6968052	321	2.9	319	83	2	1085	31	9	15	43	1.79
6971314--6971340	14	1.9	14	100	0	54	40	0	0	59	0.98
6971269--6971350	31	2.5	32	76	11	87	37	1	0	60	1.04
6971543--6971583	21	2.0	21	90	0	64	51	0	0	48	1.00
6971552--6971600	21	2.3	20	82	6	53	48	0	0	51	1.00
6972737--6972801	32	2.1	31	88	2	94	49	9	12	29	1.71
6972737--6972801	31	2.1	32	85	8	89	49	9	12	29	1.71
6974109--6974157	3	16.3	3	95	0	89	67	2	0	30	1.02
6974603--6974675	36	2.0	36	89	0	110	39	10	21	27	1.87
6977524--6977586	15	4.0	16	69	10	58	79	0	19	1	0.82
6980481--6980529	23	2.2	23	88	3	73	42	12	18	26	1.85
6980758--6980800	18	2.6	15	82	17	50	72	11	2	13	1.22
6981290--6981348	25	2.4	25	94	5	104	20	11	0	67	1.21
6981290--6981363	15	5.1	15	79	11	57	18	10	1	68	1.26
6981302--6981379	38	2.1	38	83	6	99	23	7	2	66	1.30
6981895--6981997	50	2.0	52	81	7	122	38	4	14	41	1.67
6989686--6989743	28	2.1	28	93	0	98	29	6	25	37	1.82
6993894--6994164	41	6.8	40	78	6	248	26	14	16	42	1.86
6993982--6994056	34	2.2	34	87	0	105	28	17	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6993945--6994184	74	3.1	74	78	10	250	26	14	17	42	1.87
6993901--6994124	115	1.9	115	88	1	333	27	14	16	41	1.87
6994021--6994177	81	1.9	81	83	5	201	26	14	17	42	1.87
6993895--6994184	155	1.9	155	85	2	404	26	14	16	42	1.87
6998942--6998990	26	1.9	25	83	4	62	8	2	12	77	1.07
6999382--6999455	22	3.4	22	73	12	71	31	12	24	32	1.92
6999260--6999571	148	2.1	148	82	4	362	32	14	17	34	1.91
6999405--6999697	126	2.3	125	83	5	349	33	13	17	35	1.89
6999671--6999733	22	2.9	22	87	0	90	28	12	25	33	1.92
6999533--6999801	148	1.8	148	84	1	369	34	14	17	33	1.90
6999702--7000005	103	3.0	103	79	8	334	32	12	18	36	1.88
7000227--7000292	29	2.3	28	82	7	71	25	3	0	71	1.01
7000279--7000383	17	6.4	17	68	20	71	21	5	1	70	1.18
7000224--7000350	30	4.1	30	75	14	91	24	4	0	70	1.12
7000279--7000383	47	2.1	52	80	16	125	21	5	1	70	1.18
7000326--7000364	20	1.9	21	85	15	55	20	7	2	69	1.26
7000253--7000387	24	5.7	23	70	17	73	22	5	1	71	1.14
7001225--7001310	11	7.8	11	71	20	56	20	1	2	75	0.98
7001214--7001317	5	19.8	5	73	18	54	19	1	1	76	0.97
7001268--7001316	25	2.0	25	88	8	73	18	2	0	79	0.83
7001330--7001414	44	1.9	45	88	7	129	42	8	12	36	1.73
7001374--7001647	116	2.4	114	85	11	387	41	8	15	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7001385--7001650	58	4.6	57	85	6	333	40	8	15	34	1.78
7001442--7001532	32	3.1	28	65	23	71	40	6	17	35	1.76
7001374--7001650	59	4.8	55	82	9	274	41	9	15	34	1.78
7002803--7002838	5	7.0	5	87	6	54	80	16	2	0	0.83
7002803--7002860	16	3.6	16	80	13	64	82	12	5	0	0.82
7002803--7002860	10	5.9	10	78	11	57	82	12	5	0	0.82
7003083--7003208	16	8.4	16	74	20	87	23	5	0	70	1.13
7003051--7003166	27	4.4	25	72	18	94	24	4	0	71	1.04
7003110--7003209	43	2.3	43	84	8	123	23	6	1	70	1.16
7003112--7003211	31	3.2	31	77	8	87	22	6	2	70	1.20
7004088--7004135	5	9.8	5	80	13	55	18	2	0	79	0.84
7004152--7004367	58	3.7	58	86	3	292	43	7	13	35	1.73
7005246--7005309	26	2.5	26	79	5	76	31	15	15	37	1.89
7006261--7006566	148	2.1	148	83	0	378	20	16	9	52	1.71
7013991--7014015	13	1.9	13	100	0	50	72	4	8	16	1.24
7014071--7014135	24	2.6	25	76	9	71	67	3	21	7	1.30
7016010--7016051	17	2.3	18	88	8	59	35	11	14	38	1.83
7022211--7022245	18	1.9	18	94	0	61	71	2	25	0	1.00
7025079--7025127	3	16.7	3	95	4	91	69	0	0	30	0.89
7025380--7025418	16	2.4	16	82	4	51	66	0	2	30	1.05
7026330--7027148	272	3.0	272	99	0	1620	41	7	13	37	1.74
7027492--7027538	3	15.7	3	90	0	76	65	2	2	29	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7031453--7031708	123	2.1	123	82	7	306	48	8	18	23	1.76
7031575--7032096	152	3.5	145	77	11	432	50	10	18	20	1.75
7031719--7032088	155	2.4	155	81	8	399	50	10	18	19	1.75
7033434--7033466	13	2.3	15	90	10	52	81	0	18	0	0.68
7033620--7033693	12	6.0	12	80	4	85	83	0	10	5	0.79
7033621--7033695	17	4.6	16	80	12	82	84	0	9	6	0.79
7033621--7033673	18	2.9	19	83	10	67	84	0	9	5	0.76
7033621--7033706	24	3.5	24	80	10	93	82	0	10	6	0.84
7033620--7033691	29	2.4	30	84	9	85	83	0	11	5	0.80
7033621--7033703	19	4.7	18	75	20	77	83	0	9	7	0.82
7034509--7034585	37	2.1	36	85	9	102	28	14	18	38	1.89
7034753--7034816	4	16.5	4	78	12	53	71	4	3	20	1.17
7034751--7034799	11	4.4	11	79	5	62	67	6	2	24	1.24
7034787--7034836	8	6.4	8	79	9	50	82	4	2	12	0.90
7034787--7034836	23	2.1	24	85	3	66	82	4	2	12	0.90
7035825--7035859	11	3.3	11	92	4	54	85	0	5	8	0.73
7035822--7035860	10	3.8	10	83	6	51	84	0	7	7	0.77
7036932--7036974	19	2.3	19	84	11	54	65	0	11	23	1.25
7042157--7042186	3	10.3	3	92	7	53	66	0	0	33	0.92
7042158--7042187	14	2.1	14	100	0	60	63	0	0	36	0.95
7045535--7045571	18	2.0	19	89	5	58	45	10	8	35	1.69
7045776--7045825	22	2.3	21	82	3	55	52	12	0	36	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7045875--7045908	17	2.0	17	88	11	52	47	8	8	35	1.66
7047261--7047303	10	4.6	9	77	11	50	2	13	0	83	0.74
7052035--7052084	22	2.3	22	82	6	57	64	10	4	22	1.41
7052147--7052183	8	4.5	8	90	6	56	67	0	10	21	1.21
7053166--7053207	13	3.3	12	84	15	50	66	2	0	30	1.04
7053841--7053991	81	1.9	80	84	6	207	60	7	5	26	1.47
7058301--7058359	22	2.7	22	81	0	73	37	16	11	33	1.86
7058381--7058551	56	3.0	55	77	7	164	46	11	14	28	1.78
7058440--7058530	18	5.0	18	77	2	83	49	12	10	27	1.73
7058433--7058551	37	3.2	37	78	4	123	49	10	12	26	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129