genome.fa.s24.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  37  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4992054--4995539	899	3.8	900	87	3	4599	26	25	23	24	2.00
4997243--4997293	26	2.0	26	96	0	93	25	25	19	29	1.99
4996366--4998917	883	2.8	893	86	4	3452	26	24	24	25	2.00
4998152--4998204	26	2.0	26	92	0	88	26	26	20	26	1.99
4998178--5000126	710	2.8	709	87	3	2663	26	23	23	26	2.00
5000132--5002489	906	2.6	899	87	3	3410	25	23	24	26	2.00
5003830--5003882	26	2.0	26	92	0	88	28	24	18	28	1.98
5005625--5005677	26	2.0	26	92	0	88	26	24	20	28	1.99
5003492--5006353	905	3.2	899	87	3	4144	25	25	23	25	2.00
5006133--5006584	238	1.9	237	87	2	656	32	24	18	24	1.97
5006767--5006819	26	2.0	26	89	7	81	26	26	18	28	1.98
5008233--5008285	26	2.0	26	89	7	81	30	24	16	28	1.97
5010923--5010975	26	2.0	26	92	0	88	28	22	20	28	1.99
5008111--5011332	892	3.6	896	85	3	4290	25	24	24	25	2.00
5012402--5012453	26	2.0	25	89	10	79	26	23	21	28	1.99
5013290--5013341	26	2.0	26	92	0	86	28	25	17	28	1.97
5011532--5014188	902	3.0	896	86	2	3761	24	24	24	25	2.00
5013677--5014697	509	2.0	508	89	1	1546	26	26	22	23	2.00
5014700--5014752	26	2.0	26	92	0	88	26	28	18	26	1.98
5014185--5017449	897	3.7	895	88	4	4631	25	25	24	24	2.00
5016490--5016542	26	2.0	26	96	0	97	26	24	20	28	1.99
5017376--5017427	26	2.0	26	96	0	95	28	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5017216--5017614	184	2.2	185	88	0	575	21	27	27	23	1.99
5019176--5019228	26	2.0	26	100	0	106	26	26	20	26	1.99
5022550--5022925	157	2.4	158	82	6	442	21	29	26	22	1.99
5023762--5023813	25	2.0	26	88	3	79	25	23	21	30	1.99
5024579--5024631	26	2.0	26	100	0	106	26	26	20	26	1.99
5025532--5025587	26	2.2	26	96	0	103	26	17	19	35	1.94
5026422--5028656	717	3.1	716	85	5	3038	27	23	22	26	2.00
5029184--5029235	26	2.0	26	92	0	86	26	26	21	25	1.99
5029765--5033128	872	3.8	870	85	4	4496	25	24	24	25	2.00
5033102--5033154	26	2.0	26	92	0	88	28	24	18	28	1.98
5035624--5035674	26	2.0	26	84	7	68	31	19	21	27	1.97
5037411--5037463	26	2.0	26	100	0	106	26	26	20	26	1.99
5035019--5039096	895	4.6	894	88	2	5783	26	24	23	25	2.00
5038307--5038359	26	2.0	26	96	0	97	26	24	20	28	1.99
5039910--5039962	26	2.0	26	96	0	97	24	26	20	28	1.99
5041318--5041343	8	3.2	8	100	0	52	0	61	26	11	1.30
5040785--5043695	849	3.4	840	82	9	2732	25	24	23	25	2.00
5042329--5042381	26	2.0	26	96	0	97	26	24	20	28	1.99
5041623--5043633	874	2.3	884	87	4	2815	25	24	23	26	2.00
5043228--5043284	26	2.1	27	83	6	80	24	24	19	31	1.98
5043235--5043287	26	2.0	26	92	0	88	28	24	18	28	1.98
5045138--5045189	26	2.0	26	88	3	79	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5046029--5046080	25	2.0	26	96	3	97	26	25	21	26	1.99
5046495--5051360	887	5.5	886	86	3	6376	26	24	23	25	2.00
5048810--5048861	26	2.0	26	92	3	88	28	23	21	26	1.99
5049710--5049762	26	2.0	26	92	0	88	30	26	16	26	1.97
5050677--5052001	716	1.9	704	87	3	1969	27	22	22	26	1.99
5051308--5052972	874	1.9	878	86	3	2415	25	24	24	25	2.00
5052205--5053699	719	2.1	714	88	3	2187	26	24	23	25	2.00
5052901--5054532	865	1.9	865	87	3	2393	26	24	23	25	2.00
5053784--5055271	713	2.1	702	86	3	2072	26	23	22	26	2.00
5055380--5055432	26	2.0	26	88	0	79	26	24	18	30	1.98
5055855--5055913	26	2.2	27	78	3	66	57	10	8	23	1.59
5054505--5058841	893	4.9	895	82	5	4963	25	24	23	25	2.00
5056283--5056335	26	2.0	26	96	0	97	28	26	18	26	1.98
5057037--5057358	173	1.9	173	82	3	416	20	22	32	24	1.97
5058058--5059483	724	2.0	718	90	1	2246	26	24	22	26	2.00
5060533--5060585	26	2.0	26	92	0	88	28	24	18	28	1.98
5059661--5065687	885	6.8	878	82	7	6872	25	24	23	25	2.00
5062278--5062327	26	1.9	26	91	0	82	26	28	18	28	1.98
5064936--5064986	26	2.0	26	96	0	93	33	29	9	27	1.89
5066485--5066536	26	2.0	26	92	3	88	26	23	21	28	1.99
5068090--5068142	26	2.0	26	100	0	106	26	26	20	26	1.99
5068980--5069032	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5071427--5071479	26	2.0	26	88	0	79	28	22	18	30	1.98
5072314--5072366	26	2.0	26	92	0	88	26	26	20	26	1.99
5070998--5089828	901	20.7	896	74	11	12360	25	24	24	25	2.00
5073221--5073273	26	2.0	26	92	0	88	28	24	18	28	1.98
5075000--5075052	26	2.0	26	88	0	79	22	24	22	30	1.99
5075902--5075951	26	1.9	26	100	0	100	22	24	22	32	1.98
5076797--5076849	26	2.0	26	96	0	97	28	22	20	28	1.99
5077696--5077748	26	2.0	26	92	0	88	28	24	20	26	1.99
5081494--5081546	26	2.0	26	96	0	97	28	26	18	26	1.98
5082358--5082410	26	2.0	26	92	0	88	28	24	18	28	1.98
5083249--5083301	26	2.0	26	96	0	97	28	26	20	24	1.99
5084140--5084195	26	2.2	26	83	0	67	33	23	14	28	1.94
5085025--5085077	26	2.0	26	92	0	88	26	26	22	24	2.00
5086507--5086559	26	2.0	26	88	0	79	28	26	18	26	1.98
5085573--5086721	579	2.0	577	86	2	1601	22	27	27	23	1.99
5086913--5086963	26	2.0	26	92	0	84	29	27	17	25	1.98
5087394--5087423	15	2.1	15	93	6	53	70	6	3	20	1.25
5088711--5088763	26	2.0	26	96	0	97	26	28	20	24	1.99
5089616--5089668	26	2.0	26	92	0	88	28	26	20	24	1.99
5090518--5090569	26	2.0	26	88	0	77	51	15	11	21	1.74
5090941--5090993	26	2.0	26	92	0	88	24	28	22	24	2.00
5089864--5092708	894	3.2	892	87	2	3917	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5091835--5091885	26	2.0	26	92	0	84	33	27	11	27	1.92
5092720--5095562	884	3.2	881	85	5	3636	26	24	23	26	2.00
5095900--5095951	26	2.0	26	88	0	77	26	21	21	30	1.98
5094770--5096351	790	2.0	790	85	3	2146	22	25	25	26	2.00
5096803--5096855	26	2.0	26	88	0	79	26	22	22	28	1.99
5095560--5102823	891	8.2	893	84	5	8602	25	24	23	25	2.00
5098597--5098649	26	2.0	26	92	0	88	30	26	16	26	1.97
5099496--5099551	26	2.2	26	96	0	103	30	25	17	26	1.97
5101259--5101312	26	2.1	26	89	0	81	24	24	22	29	1.99
5104549--5104601	26	2.0	26	96	0	97	28	26	20	24	1.99
5105458--5105510	26	2.0	26	92	0	88	26	26	18	28	1.98
5103680--5108593	877	5.5	899	86	3	6328	25	24	24	25	2.00
5106361--5106413	26	2.0	26	85	0	70	24	22	22	30	1.99
5108130--5108182	26	2.0	26	100	0	106	26	26	20	26	1.99
5109122--5109174	26	2.0	26	92	0	88	28	24	18	28	1.98
5109148--5110641	720	2.1	718	88	2	2208	26	24	23	25	2.00
5110745--5110795	26	2.0	26	96	0	93	23	27	19	29	1.98
5111651--5111703	26	2.0	26	96	0	97	28	26	20	24	1.99
5109866--5123676	906	15.2	899	81	7	14608	25	24	24	25	2.00
5112537--5112589	26	2.0	26	100	0	106	26	26	20	26	1.99
5109866--5123676	894	15.2	894	81	7	14759	25	24	24	25	2.00
5114462--5114512	26	2.0	26	92	0	84	25	23	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5115365--5115417	26	2.0	26	100	0	106	26	26	20	26	1.99
5117146--5117198	26	2.0	26	96	0	97	26	28	18	26	1.98
5118935--5118985	26	2.0	26	96	0	93	27	27	15	29	1.96
5114315--5123676	898	10.4	900	85	4	11644	25	24	24	25	2.00
5119832--5119884	26	2.0	26	92	0	88	30	26	16	26	1.97
5120733--5120837	26	4.0	26	93	0	174	28	24	18	28	1.98
5121685--5121737	26	2.0	26	96	0	97	26	24	20	28	1.99
5122545--5122597	26	2.0	26	92	0	88	28	24	18	28	1.98
5123442--5123494	26	2.0	26	88	0	79	26	22	18	32	1.97
5123820--5123898	26	3.0	26	90	0	104	29	22	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129