genome.fa.s24.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  32  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4335252--4338456	899	3.6	901	89	1	4745	24	25	24	26	2.00
4338025--4338075	26	2.0	26	96	0	93	25	25	19	29	1.99
4339633--4339685	26	2.0	26	96	0	97	26	24	22	26	2.00
4343146--4343196	26	2.0	26	84	0	66	23	29	17	29	1.97
4344889--4344941	26	2.0	26	100	0	106	26	26	20	26	1.99
4347501--4347550	26	1.9	26	91	0	82	30	28	14	28	1.95
4340510--4348142	886	8.7	876	83	7	8634	25	24	24	25	2.00
4348281--4348333	26	2.0	26	100	0	106	26	26	20	26	1.99
4349172--4349224	26	2.0	26	88	0	79	22	24	24	28	2.00
4350542--4350692	79	1.9	79	91	0	248	41	16	17	24	1.90
4354134--4354186	26	2.0	26	92	0	88	26	26	20	26	1.99
4353263--4357530	875	4.9	873	85	5	5412	25	25	23	25	2.00
4356744--4356793	25	2.0	25	88	0	73	30	26	20	24	1.98
4355885--4357544	895	1.8	893	88	2	2438	26	24	24	25	2.00
4356773--4358254	716	2.1	713	89	2	2237	26	24	23	25	2.00
4358353--4358408	26	2.2	26	90	0	85	30	21	17	30	1.96
4357497--4367717	903	11.3	900	85	3	12819	25	24	24	25	2.00
4360160--4360212	26	2.0	26	100	0	106	26	26	20	26	1.99
4364650--4364700	26	2.0	26	92	0	84	19	27	19	33	1.96
4365395--4365473	26	3.0	26	92	0	140	29	25	17	27	1.98
4365606--4365658	26	2.0	26	88	0	79	26	20	22	30	1.98
4366504--4366556	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4367406--4367457	26	2.0	26	92	0	86	25	25	19	30	1.98
4368220--4368272	26	2.0	26	88	0	79	28	22	24	24	2.00
4371804--4371855	26	2.0	26	96	0	95	25	26	19	28	1.98
4369123--4374495	904	6.0	901	85	3	6913	25	24	23	25	2.00
4372708--4372760	26	2.0	26	92	0	88	28	24	18	28	1.98
4375164--4375216	26	2.0	26	92	0	88	28	24	18	28	1.98
4376787--4376839	26	2.0	26	96	0	97	26	20	22	30	1.98
4377679--4377731	26	2.0	26	88	0	79	26	24	20	28	1.99
4378581--4378633	26	2.0	26	96	0	97	26	24	20	28	1.99
4379477--4379534	26	2.2	26	93	3	98	29	25	18	25	1.98
4375548--4385632	901	11.3	899	86	3	12315	26	24	23	25	2.00
4380383--4380435	26	2.0	26	92	0	88	30	22	18	28	1.98
4381284--4381336	26	2.0	26	96	0	97	32	26	16	24	1.97
4381521--4381552	12	2.7	12	95	0	55	12	34	18	34	1.89
4382196--4382248	26	2.0	26	96	0	97	26	24	22	26	2.00
4382421--4382452	12	2.7	12	95	0	55	12	34	18	34	1.89
4383095--4383147	26	2.0	26	96	0	97	26	24	22	26	2.00
4383979--4384031	26	2.0	26	88	0	79	26	26	20	26	1.99
4384866--4387051	711	3.1	707	88	3	3206	25	23	24	26	2.00
4388181--4388232	26	2.0	26	84	0	68	51	13	11	23	1.73
4388441--4388493	26	2.0	26	88	0	79	32	26	15	26	1.95
4389041--4389093	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4389937--4389989	26	2.0	26	100	0	106	26	26	20	26	1.99
4390837--4390889	26	2.0	26	92	0	88	30	24	18	26	1.98
4391741--4391792	26	2.0	26	88	0	77	28	23	17	30	1.97
4388640--4396005	900	8.2	901	87	2	9967	25	24	23	25	2.00
4392643--4392693	26	2.0	26	92	0	84	25	23	19	31	1.98
4393545--4393595	26	2.0	26	92	0	84	25	25	17	31	1.97
4395326--4395378	26	2.0	26	92	0	88	28	24	18	28	1.98
4395258--4396739	732	2.0	732	88	1	2231	26	23	23	25	2.00
4395984--4398626	898	3.0	890	86	4	3653	25	24	23	25	2.00
4397866--4399261	719	1.9	716	88	1	2116	26	23	23	26	2.00
4400325--4400375	26	2.0	26	88	0	75	33	27	11	27	1.92
4402094--4402146	26	2.0	26	96	0	97	26	24	20	28	1.99
4399447--4404475	888	5.7	891	82	7	5886	26	24	23	25	2.00
4403827--4403879	26	2.0	26	88	0	79	28	24	20	26	1.99
4407175--4407230	26	2.2	26	96	0	103	28	23	19	28	1.98
4407953--4407988	15	2.4	15	100	0	72	33	22	38	5	1.77
4408975--4409027	26	2.0	26	88	0	79	30	24	18	26	1.98
4405428--4410838	895	6.1	900	81	6	6098	26	24	23	25	2.00
4409870--4409922	26	2.0	26	92	0	88	28	24	18	28	1.98
4410765--4410817	26	2.0	26	88	0	79	30	20	16	32	1.95
4410608--4411215	185	3.3	185	85	3	780	21	28	27	22	1.99
4411135--4411187	26	2.0	26	92	7	90	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4411919--4411997	26	3.0	26	96	0	140	27	25	18	27	1.98
4412421--4412516	26	3.7	26	85	2	138	52	16	8	22	1.71
4412441--4412530	26	3.4	27	80	10	105	54	15	10	20	1.69
4412838--4412888	26	2.0	26	88	0	75	29	21	19	29	1.98
4415223--4415275	26	2.0	26	88	0	79	28	26	18	26	1.98
4415868--4415920	26	2.0	26	96	0	97	26	24	20	28	1.99
4416344--4416401	26	2.2	26	81	0	71	62	5	8	24	1.45
4417599--4417651	26	2.0	26	88	0	79	28	26	16	28	1.97
4416720--4420281	905	4.0	902	87	2	4939	24	25	24	25	2.00
4418504--4418555	26	2.0	25	92	3	86	26	23	21	28	1.99
4418975--4419020	19	2.3	21	85	11	69	56	6	13	23	1.60
4419397--4419448	25	2.0	26	96	3	97	26	26	19	26	1.99
4421141--4421193	26	2.0	26	92	0	88	26	26	20	26	1.99
4420283--4428092	901	8.9	871	84	6	8607	25	24	24	25	2.00
4424641--4424693	26	2.0	26	100	0	106	26	26	20	26	1.99
4425542--4425594	26	2.0	26	100	0	106	26	26	20	26	1.99
4426448--4426497	26	1.9	26	91	0	82	26	24	22	28	1.99
4429764--4429816	26	2.0	26	92	7	90	30	26	16	26	1.97
4431549--4431601	26	2.0	26	96	0	97	28	26	18	26	1.98
4432437--4432489	26	2.0	26	92	0	88	26	26	20	26	1.99
4433256--4433308	26	2.0	26	85	0	70	30	26	16	26	1.97
4434140--4434192	26	2.0	26	96	0	97	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4435024--4435076	26	2.0	26	85	0	70	30	24	18	26	1.98
4435919--4435971	26	2.0	26	96	0	97	28	26	18	26	1.98
4433198--4437716	884	5.1	900	85	4	5775	25	24	23	25	2.00
4440287--4440338	26	2.0	26	96	0	95	30	21	19	28	1.97
4439425--4441049	894	1.8	891	88	2	2506	26	24	23	26	2.00
4441023--4441075	26	2.0	26	96	0	97	28	26	18	26	1.98
4440222--4441787	737	2.1	737	89	2	2360	26	24	23	26	2.00
4442320--4442742	213	2.0	214	90	0	677	39	17	16	26	1.91
4444630--4444682	26	2.0	26	89	7	81	26	24	18	30	1.98
4446399--4446451	26	2.0	26	96	0	97	28	26	18	26	1.98
4445528--4456597	892	12.5	889	79	9	9445	25	24	23	25	2.00
4448131--4448180	26	1.9	26	100	0	100	26	26	20	28	1.99
4447189--4456597	845	10.7	842	73	15	5356	25	24	24	25	2.00
4447978--4456597	894	9.7	894	81	9	9157	25	24	24	25	2.00
4449897--4449949	26	2.0	26	92	0	88	28	24	18	28	1.98
4450783--4450838	26	2.1	28	90	6	89	26	23	21	28	1.99
4452583--4452634	26	2.0	26	88	0	77	28	23	17	30	1.97
4451704--4456466	841	5.4	879	78	9	4348	25	24	24	25	2.00
4453426--4453476	26	2.0	26	92	0	84	25	23	19	31	1.98
4454291--4454343	26	2.0	26	92	0	88	28	24	18	28	1.98
4457508--4457558	26	2.0	26	96	0	93	25	21	19	33	1.97
4458397--4458449	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4459288--4459338	26	2.0	26	92	0	84	25	25	17	31	1.97
4456600--4461758	902	5.8	900	86	4	6839	25	24	24	25	2.00
4464628--4469682	888	5.7	890	83	5	6059	26	24	23	25	2.00
4467276--4467328	26	2.0	26	96	0	97	26	24	20	28	1.99
4468181--4468233	26	2.0	26	92	0	88	32	24	16	26	1.97
4469035--4469087	26	2.0	26	96	0	97	26	24	20	28	1.99
4468979--4470370	689	2.0	700	85	5	1899	27	22	23	25	2.00
4471497--4471549	26	2.0	26	96	0	97	28	26	18	26	1.98
4472382--4472437	26	2.2	26	93	0	94	28	21	19	30	1.98
4473166--4473203	15	2.5	15	91	4	58	31	15	39	13	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129