genome.fa.s24.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  38  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5127120--5127172	26	2.0	26	96	0	97	28	26	18	26	1.98
5127146--5128472	706	1.9	711	87	2	1995	27	23	23	25	2.00
5128751--5129148	57	6.7	58	85	9	518	34	12	8	44	1.72
5128751--5129150	123	3.4	117	84	8	526	34	12	8	45	1.72
5129187--5129247	16	3.8	16	82	4	70	78	1	6	13	1.01
5129189--5129265	6	12.8	6	74	15	52	76	1	7	14	1.06
5129170--5129251	27	3.1	25	81	15	85	76	1	7	14	1.05
5129189--5129264	11	6.9	11	73	13	59	76	1	7	14	1.07
5129211--5129264	27	2.0	28	89	10	85	77	1	7	12	1.05
5129287--5129344	4	14.8	4	80	10	66	75	5	0	18	0.98
5129298--5129336	12	3.2	12	100	0	78	76	7	0	15	0.99
5130194--5130235	21	2.0	22	85	4	59	66	0	7	26	1.17
5130217--5130285	18	4.1	17	76	12	63	75	1	0	23	0.89
5130217--5130320	7	13.9	8	67	22	57	71	0	0	27	0.93
5130217--5130320	4	27.8	4	70	21	57	71	0	0	27	0.93
5130217--5130317	30	3.5	30	70	12	86	71	0	0	27	0.93
5130217--5130317	28	3.6	27	69	21	66	71	0	0	27	0.93
5130335--5130369	6	5.8	6	90	10	54	80	0	0	20	0.72
5130558--5130893	123	2.7	122	87	6	466	28	14	13	44	1.82
5130750--5130794	1	45.0	1	81	0	54	0	0	8	91	0.43
5130750--5130794	10	4.7	10	89	10	76	0	0	8	91	0.43
5130750--5130794	18	2.4	18	92	7	72	0	0	8	91	0.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5130902--5131368	42	10.7	42	72	12	325	33	24	18	23	1.97
5131121--5131174	28	1.9	28	88	0	81	31	33	12	22	1.92
5131079--5131284	69	3.0	69	94	0	349	33	27	16	22	1.95
5131190--5131243	28	1.9	28	92	0	90	29	33	14	22	1.94
5131000--5131423	222	1.9	222	99	0	830	35	25	16	23	1.95
5131149--5131504	153	2.3	153	89	4	545	34	25	16	23	1.96
5131343--5131396	28	1.9	28	88	0	81	31	33	12	22	1.92
5131759--5131840	43	1.9	42	87	7	121	36	17	9	36	1.82
5133161--5133203	10	4.7	9	80	13	52	4	16	0	79	0.90
5133151--5133237	46	2.0	46	86	11	128	6	18	0	74	1.03
5133153--5133200	18	2.7	18	84	12	71	6	14	0	79	0.92
5133151--5133230	27	3.1	25	76	20	76	6	18	0	75	1.01
5133151--5133237	43	2.0	41	82	14	104	6	18	0	74	1.03
5137928--5137977	26	1.9	26	95	0	91	32	20	26	22	1.98
5138846--5138898	26	2.0	26	96	0	97	28	16	24	30	1.97
5139750--5139802	26	2.0	26	100	0	106	26	16	26	30	1.97
5139559--5140020	244	1.9	244	83	3	599	21	32	26	19	1.97
5142634--5142686	26	2.0	26	92	0	88	26	20	26	26	1.99
5139994--5145501	892	6.2	889	88	3	7297	25	23	25	26	2.00
5143526--5143578	26	2.0	26	92	0	88	26	20	26	26	1.99
5145280--5145332	26	2.0	26	88	0	79	28	18	22	30	1.98
5147401--5147453	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5149104--5149204	33	3.1	33	98	0	193	32	25	30	10	1.90
5149245--5149297	26	2.0	26	88	0	79	26	18	24	30	1.98
5150984--5151033	25	2.0	25	88	0	73	34	16	24	26	1.95
5153154--5153509	176	2.0	177	90	1	563	30	19	23	27	1.98
5153612--5153651	17	2.4	17	91	0	62	30	45	17	7	1.76
5153620--5153656	17	2.2	17	100	0	74	21	40	24	13	1.89
5153683--5153735	26	2.0	26	85	0	70	32	20	16	30	1.95
5154246--5154778	177	3.0	177	94	0	917	30	18	23	27	1.98
5154610--5155292	345	2.0	344	88	1	1019	25	26	25	22	2.00
5155281--5155331	26	2.0	26	92	0	84	29	19	21	29	1.98
5156194--5156245	25	2.0	26	92	3	88	26	19	25	28	1.98
5154955--5160720	892	6.5	892	83	6	6725	25	24	24	25	2.00
5157987--5158039	26	2.0	26	96	0	97	28	20	24	26	1.99
5158868--5158920	26	2.0	26	96	0	97	26	18	26	28	1.98
5160595--5160647	26	2.0	26	96	0	97	26	22	24	26	2.00
5162039--5162068	14	2.1	14	93	0	51	20	33	30	16	1.94
5163860--5163912	26	2.0	26	92	0	88	26	16	26	30	1.97
5164741--5164791	26	2.0	26	92	0	84	31	19	23	25	1.98
5166527--5166577	26	2.0	26	92	0	84	31	19	23	25	1.98
5167424--5167475	26	2.0	26	96	3	97	26	21	25	26	1.99
5168329--5168381	26	2.0	26	92	0	88	28	18	24	28	1.98
5169232--5169284	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5170035--5170067	11	3.0	11	95	0	57	18	33	27	21	1.96
5170148--5170200	26	2.0	26	96	0	97	26	22	24	26	2.00
5171048--5171103	26	2.2	26	96	0	103	26	17	25	30	1.97
5171950--5171999	26	1.9	26	91	0	82	28	22	26	24	1.99
5172862--5172914	26	2.0	26	96	0	97	28	20	22	28	1.99
5161385--5182196	904	23.3	902	83	6	23549	25	24	24	25	2.00
5173760--5173838	26	3.0	26	96	0	149	26	20	25	27	1.99
5175210--5175543	175	1.9	174	83	1	427	22	38	21	18	1.94
5175549--5175601	26	2.0	26	88	0	79	28	22	24	24	2.00
5176449--5176501	26	2.0	26	85	7	72	28	18	24	28	1.98
5178231--5178281	26	2.0	26	96	0	93	27	17	27	27	1.98
5179120--5179172	26	2.0	26	92	0	88	26	16	26	30	1.97
5181790--5181842	26	2.0	26	96	0	97	26	18	26	28	1.98
5182623--5184440	869	2.1	869	87	2	2623	25	24	24	25	2.00
5183945--5184949	509	2.0	509	92	0	1661	26	18	23	30	1.98
5185113--5185165	26	2.0	26	92	0	88	26	16	26	30	1.97
5186395--5186447	26	2.0	26	88	0	79	26	20	22	30	1.98
5187292--5187344	26	2.0	26	92	0	88	30	26	16	26	1.97
5189974--5190026	26	2.0	26	92	0	88	28	28	18	24	1.98
5191752--5191804	26	2.0	26	96	0	97	28	26	18	26	1.98
5186365--5194328	877	8.9	894	84	5	9369	25	25	24	24	2.00
5195149--5195201	26	2.0	26	88	0	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5195636--5199640	900	4.5	897	86	3	5397	25	24	24	25	2.00
5197807--5197884	26	3.0	26	92	0	129	34	24	14	26	1.93
5198719--5198771	26	2.0	26	96	0	97	28	26	22	22	1.99
5199453--5199758	159	1.9	159	82	1	380	19	30	29	21	1.97
5200915--5200967	26	2.0	26	89	7	81	30	24	16	28	1.97
5203605--5203657	26	2.0	26	96	0	97	26	24	20	28	1.99
5201817--5207509	902	6.3	897	74	9	4531	25	24	25	25	2.00
5204507--5204559	26	2.0	26	96	0	97	28	26	18	26	1.98
5204572--5204922	187	1.9	186	82	0	441	16	21	40	21	1.91
5206314--5206366	26	2.0	26	92	0	88	30	24	18	26	1.98
5207216--5207268	26	2.0	26	92	0	88	26	26	20	26	1.99
5207297--5207721	212	2.0	212	100	0	850	19	29	26	24	1.98
5208335--5208387	26	2.0	26	88	0	79	28	22	18	30	1.98
5209221--5209270	26	1.9	26	95	0	91	24	26	20	30	1.98
5211379--5211431	26	2.0	26	85	7	72	28	20	20	30	1.98
5213169--5213221	26	2.0	26	96	0	97	24	26	22	26	2.00
5210498--5216610	907	6.8	902	85	4	7882	25	24	24	25	2.00
5214071--5214123	26	2.0	26	96	0	97	26	24	20	28	1.99
5216005--5217235	621	2.0	620	89	1	1894	29	23	21	26	1.99
5217360--5217412	26	2.0	26	96	0	97	26	24	20	28	1.99
5216625--5219122	895	2.8	890	86	2	3326	27	24	23	24	2.00
5221600--5221626	8	3.4	8	100	0	54	0	59	25	14	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5220923--5226136	868	5.9	889	83	6	6260	25	24	23	25	2.00
5223597--5226133	903	2.8	870	83	6	3041	26	24	23	25	2.00
5225363--5226819	714	2.0	714	88	2	2120	27	23	22	26	2.00
5226950--5227002	26	2.0	26	96	0	97	28	26	18	26	1.98
5226081--5253339	891	29.9	891	73	12	16299	26	24	23	25	2.00
5227846--5227898	26	2.0	26	92	0	88	26	18	24	30	1.98
5228738--5228788	26	2.0	26	84	0	66	35	21	11	31	1.90
5226081--5243929	896	19.7	891	73	12	11113	26	24	24	25	2.00
5230318--5230692	159	2.4	159	85	4	490	20	30	28	21	1.98
5232382--5232434	26	2.0	26	85	0	70	26	26	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129