genome.fa.s24.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  95  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15783913--15784426	59	8.7	58	86	4	645	45	6	11	35	1.67
15783912--15784430	174	2.9	174	87	6	713	45	6	11	36	1.67
15789935--15789973	15	2.5	16	83	4	53	61	7	25	5	1.44
15791256--15792413	180	6.4	179	77	6	968	39	8	9	42	1.67
15791255--15792324	361	3.0	357	78	7	1069	40	8	9	41	1.67
15792265--15792584	156	2.1	156	81	1	381	40	8	8	42	1.66
15792582--15792797	119	1.8	120	86	5	321	49	6	9	34	1.63
15793004--15794003	181	5.6	176	73	10	553	42	6	8	42	1.62
15793623--15793660	18	2.1	19	95	5	69	42	7	5	44	1.56
15794137--15799066	180	27.4	180	75	7	3504	40	8	9	41	1.67
15797066--15797116	18	2.8	19	80	17	72	43	3	11	41	1.60
15797798--15797839	16	2.6	16	100	0	84	45	7	11	35	1.69
15794137--15799067	361	13.7	359	75	9	2067	40	8	9	41	1.67
15799082--15799135	18	3.0	19	78	10	60	42	9	1	46	1.46
15799090--15799734	181	3.6	178	78	7	561	39	9	8	42	1.67
15799761--15802316	181	14.3	180	76	6	1902	40	9	8	40	1.69
15799283--15800208	481	1.9	482	81	2	1128	38	10	8	41	1.71
15799885--15801757	537	3.5	537	77	8	1467	41	9	8	39	1.69
15799731--15802316	361	7.2	357	74	8	1671	40	10	8	40	1.69
15801190--15801513	171	1.9	171	82	5	413	41	10	6	41	1.66
15802320--15804438	358	6.0	353	73	10	1355	40	7	10	41	1.68
15802321--15803794	181	8.2	180	75	8	1089	39	7	10	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15802460--15803823	537	2.5	533	80	5	1442	39	7	10	42	1.67
15802404--15804447	361	5.8	359	73	10	1079	40	7	10	41	1.68
15802404--15803823	361	4.0	357	75	8	1139	39	7	10	42	1.67
15803980--15804447	181	2.6	181	80	3	496	42	8	9	39	1.67
15804319--15804589	145	1.9	146	86	4	397	40	8	8	42	1.65
15803993--15804931	505	1.9	506	81	3	1158	41	8	9	40	1.67
15804462--15806046	180	8.9	181	76	6	1265	40	8	8	41	1.67
15804142--15804769	325	1.9	326	83	4	820	40	9	8	41	1.68
15804462--15805671	529	2.3	536	80	6	1341	41	8	8	42	1.65
15804462--15805839	709	1.9	709	79	4	1539	41	8	8	41	1.66
15806092--15807494	180	7.8	178	77	9	1115	41	7	10	40	1.68
15806080--15807382	538	2.4	537	80	5	1361	41	7	10	40	1.68
15806095--15807355	361	3.5	355	76	10	1119	41	7	10	40	1.67
15807423--15807592	87	2.0	87	89	2	261	38	7	5	47	1.56
15807557--15816432	181	49.8	176	72	9	3853	39	8	10	41	1.69
15807511--15814190	181	37.3	179	74	8	3964	39	8	9	41	1.69
15807511--15817907	539	19.4	538	70	11	4231	39	8	10	41	1.69
15810528--15810560	17	2.0	17	88	5	50	51	0	9	39	1.34
15807548--15816269	358	24.5	358	71	11	868	39	8	10	41	1.69
15814033--15814345	158	2.0	156	82	3	378	37	10	8	42	1.71
15814191--15817919	181	20.7	180	69	10	1072	39	8	10	42	1.69
15815409--15815765	180	2.0	180	84	2	466	42	7	10	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15818050--15818383	177	1.9	177	84	3	456	37	8	11	43	1.70
15818954--15820100	180	6.4	176	73	10	557	39	7	10	41	1.68
15818870--15820564	181	9.4	181	75	8	1209	39	8	11	40	1.70
15820495--15820625	66	2.0	67	82	7	160	46	10	9	32	1.72
15820562--15821681	181	6.3	178	77	8	815	42	6	8	41	1.63
15821696--15825438	181	20.9	180	72	10	553	41	9	8	40	1.67
15822405--15826316	181	21.9	179	74	9	2044	41	9	7	40	1.67
15822370--15826325	362	11.1	359	75	8	2587	41	9	7	40	1.67
15822402--15826329	539	7.3	536	77	8	2773	41	9	7	40	1.67
15824931--15824963	16	2.0	17	88	5	50	45	9	3	42	1.51
15821680--15826318	897	5.2	888	74	8	2948	41	9	8	40	1.67
15829454--15829483	3	10.0	3	100	0	60	33	0	0	66	0.92
15833572--15833597	2	13.0	2	100	0	52	50	0	0	50	1.00
15834669--15834701	16	2.1	16	94	0	57	57	3	0	39	1.14
15834970--15835022	27	2.0	26	82	13	65	47	5	1	45	1.37
15838852--15839095	120	2.0	120	98	0	470	35	19	15	30	1.92
15840569--15842917	181	13.1	181	76	6	1728	41	7	9	41	1.65
15840567--15844700	361	11.4	356	72	11	2080	40	7	9	42	1.66
15840619--15842917	539	4.3	530	75	8	1736	41	7	9	41	1.65
15842743--15843059	164	1.9	165	81	3	388	39	7	10	42	1.67
15843161--15843490	183	1.8	181	80	7	400	41	8	10	40	1.69
15843458--15843547	27	3.4	27	66	6	76	34	10	8	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15843458--15843576	52	2.3	52	91	4	195	33	10	7	48	1.65
15844014--15844046	16	2.0	17	88	5	50	48	3	9	39	1.50
15843533--15844708	180	6.5	180	79	5	1123	39	8	9	42	1.67
15843516--15844708	540	2.2	534	81	5	1350	39	8	9	42	1.68
15844757--15848003	181	18.2	180	75	7	2097	39	8	9	42	1.69
15844761--15847992	358	9.1	357	73	10	1791	39	8	9	41	1.69
15846268--15846315	16	2.7	18	75	12	55	45	8	8	37	1.64
15846248--15847471	179	6.8	180	73	10	445	40	8	9	41	1.68
15848079--15848177	45	2.2	45	87	7	141	33	5	18	43	1.72
15848954--15849295	162	2.1	162	80	4	366	40	8	8	42	1.66
15849119--15855818	181	37.3	181	72	9	3438	39	8	9	41	1.68
15850176--15850211	18	2.1	18	90	10	58	44	2	13	38	1.59
15849119--15855818	361	18.6	357	74	7	4197	39	8	9	41	1.68
15854475--15854549	34	2.2	35	90	4	118	44	1	13	41	1.52
15854490--15854546	18	3.3	18	72	16	57	40	1	12	45	1.52
15854508--15855815	176	7.4	179	72	9	644	40	8	10	40	1.69
15853974--15855069	574	1.9	572	79	5	1236	41	8	10	40	1.69
15855721--15855922	104	1.9	104	100	0	404	44	7	11	37	1.69
15855564--15856078	286	1.8	282	80	7	630	42	7	9	40	1.66
15855984--15857048	532	2.0	534	89	2	1617	42	9	9	39	1.69
15856766--15858060	181	7.2	179	78	7	993	39	10	9	40	1.71
15856766--15860063	363	9.3	356	73	10	1700	41	10	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15856764--15859810	544	5.7	539	74	11	1308	41	10	8	40	1.69
15858131--15860066	538	3.6	531	78	6	1667	42	10	7	39	1.68
15858137--15860065	181	10.8	179	75	7	1297	42	10	7	40	1.67
15858234--15860062	712	2.5	705	77	8	1676	42	10	7	39	1.67
15858237--15859823	356	4.4	352	75	8	1024	42	9	7	39	1.67
15861475--15861510	16	2.1	17	90	10	56	41	5	8	44	1.58
15860085--15862627	181	14.2	180	75	7	1776	41	8	8	41	1.66
15860085--15862507	893	2.7	882	77	8	2234	41	8	7	41	1.65
15860083--15862507	712	3.4	713	77	7	1727	41	8	7	41	1.65
15860085--15862535	361	6.8	357	76	8	1874	41	8	8	41	1.65
15860085--15862625	894	2.8	884	76	7	2358	41	8	8	41	1.66
15862661--15862703	22	2.0	23	86	9	63	65	2	6	25	1.30
15862899--15863315	173	2.4	172	81	7	423	43	8	8	38	1.66
15862982--15863315	173	1.9	175	84	6	446	43	9	8	38	1.68
15864893--15864925	18	1.9	17	88	11	50	39	12	6	42	1.67
15863541--15865585	182	11.4	179	72	11	1145	42	9	7	40	1.66
15864086--15866817	363	7.6	344	70	14	976	42	9	7	40	1.65
15864590--15865585	533	1.9	533	81	5	1208	43	9	7	38	1.66
15865523--15865811	160	1.8	159	83	5	386	45	6	7	40	1.59
15865675--15866828	181	6.3	181	73	11	811	42	9	7	40	1.65
15866319--15866839	179	2.9	179	79	6	568	42	9	7	41	1.64
15873179--15873275	47	2.1	47	96	0	176	34	21	8	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15875135--15882330	181	39.9	178	74	9	3524	41	9	8	40	1.68
15876088--15876133	21	2.2	21	96	0	83	41	19	0	39	1.52
15876130--15882327	181	34.5	181	76	7	4493	42	9	8	39	1.68
15875133--15882331	537	13.3	533	76	9	3550	41	9	8	40	1.68
15875133--15882357	718	10.0	715	74	9	4206	41	9	8	40	1.68
15884273--15884308	18	2.0	18	88	0	54	41	2	2	52	1.30
15884509--15884555	18	2.5	19	79	6	60	61	0	0	38	0.96
15888790--15888818	2	14.5	2	100	0	58	0	48	0	51	1.00
15889232--15889285	27	2.0	26	86	10	74	46	0	1	51	1.11
15890632--15890826	18	10.9	18	71	17	131	54	2	0	42	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129