genome.fa.s24.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  92  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14932347--14932631	129	2.2	126	81	6	308	42	4	9	44	1.56
14932458--14932686	127	1.8	127	83	3	309	41	5	10	42	1.62
14932440--14932709	127	2.1	128	79	6	287	40	5	10	44	1.61
14947936--14947961	12	2.2	12	100	0	52	23	0	15	61	1.33
14948538--14948581	22	1.9	23	81	9	54	54	2	4	38	1.33
14956946--14957072	62	2.1	60	83	5	157	39	16	5	38	1.72
14957689--14957721	12	2.6	13	90	4	50	54	0	0	45	0.99
14961166--14961208	21	2.0	21	81	0	50	32	16	0	51	1.45
14961195--14961241	23	2.0	23	87	0	67	34	29	2	34	1.70
14962303--14962351	23	2.1	23	88	7	73	38	2	26	32	1.68
14962638--14962691	27	2.0	27	85	3	72	46	1	3	48	1.30
14962793--14962862	30	2.3	31	78	11	74	60	1	5	32	1.29
14962946--14962979	16	2.0	17	88	11	52	29	0	0	70	0.87
14962968--14963002	13	2.7	13	91	8	54	37	0	0	62	0.95
14963912--14963960	16	2.9	16	84	6	53	69	0	2	28	1.00
14964145--14964187	21	2.1	20	91	4	68	46	0	0	53	1.00
14964159--14964247	27	3.5	26	68	18	71	44	1	0	53	1.07
14964332--14964385	26	2.0	27	89	3	83	38	1	5	53	1.35
14965134--14965182	21	2.3	21	89	0	71	26	4	28	40	1.74
14969589--14969794	104	2.0	101	91	4	333	29	2	16	50	1.60
14985923--14985948	7	3.7	7	100	0	52	57	11	15	15	1.65
14993420--14993485	33	2.0	32	82	2	78	62	3	7	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14993445--14993589	64	2.2	64	84	6	186	60	4	10	24	1.49
14993498--14993643	32	4.5	32	74	6	118	58	2	8	29	1.42
14993563--14993751	32	5.8	31	67	19	91	58	2	8	30	1.39
14995963--14995988	12	2.2	12	100	0	52	61	7	23	7	1.49
14996462--14996500	12	3.4	11	83	13	51	30	0	2	66	1.05
14997644--14997670	1	27.0	1	100	0	54	100	0	0	0	0.00
14998060--14998100	14	2.9	15	89	7	59	65	4	0	29	1.13
14998065--14998111	15	3.2	14	90	6	67	63	8	0	27	1.23
14998184--14998217	11	3.1	11	82	0	50	70	14	2	11	1.27
14999173--14999227	20	2.7	21	80	11	60	47	0	0	52	1.00
14999183--14999231	20	2.6	19	82	17	66	46	0	0	53	1.00
14999336--14999414	36	2.2	36	84	4	97	62	13	1	22	1.39
15006347--15006378	15	2.1	15	94	0	55	34	0	3	62	1.11
15006487--15006539	14	4.0	14	76	14	58	66	0	0	33	0.92
15006474--15006547	25	3.0	25	91	0	112	63	1	0	35	1.03
15007690--15007756	18	3.8	18	69	21	52	55	2	0	41	1.15
15013618--15013665	24	2.0	24	88	8	71	58	4	0	37	1.18
15013607--15013666	22	2.6	23	80	17	63	58	3	0	38	1.15
15013939--15013968	3	10.0	3	92	0	51	63	0	0	36	0.95
15014229--15014263	17	2.1	17	88	0	52	54	0	0	45	0.99
15014243--15014288	21	2.2	21	88	7	67	60	0	2	36	1.09
15014255--15014298	21	2.1	21	87	8	63	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15016798--15016857	30	2.0	30	83	0	75	41	13	1	43	1.54
15022593--15022632	3	13.3	3	94	0	71	32	0	2	65	1.06
15032057--15032100	21	2.1	21	84	16	56	45	2	2	50	1.27
15032075--15032109	15	2.4	14	86	9	52	51	2	0	45	1.16
15040283--15040356	18	4.1	17	74	17	51	48	2	1	47	1.24
15044274--15044329	22	2.5	22	77	13	62	42	0	0	57	0.99
15044287--15044342	18	2.8	21	70	27	57	44	0	0	55	0.99
15047054--15047111	19	3.0	20	77	10	66	36	0	3	60	1.14
15049785--15049835	26	2.0	26	84	7	68	64	3	0	31	1.11
15050112--15050192	42	1.9	42	82	9	103	46	1	1	50	1.17
15054033--15054070	19	2.1	19	85	5	51	57	0	2	39	1.12
15054097--15054136	19	2.0	20	85	4	55	45	0	5	50	1.23
15054046--15054211	54	3.1	52	78	10	158	53	0	6	39	1.32
15066171--15066227	25	2.3	25	84	0	69	54	0	0	45	0.99
15066189--15066245	29	1.9	30	82	10	73	57	0	0	42	0.98
15066915--15067111	106	1.9	106	85	2	279	45	2	2	50	1.24
15067548--15067623	33	2.3	33	80	13	86	60	0	0	39	0.97
15067569--15067622	8	7.2	8	74	14	53	62	0	0	37	0.95
15068088--15068131	20	2.2	19	84	15	54	50	2	0	47	1.13
15069862--15069921	24	2.5	24	82	10	70	56	0	3	40	1.16
15069863--15069913	24	2.1	25	88	3	77	58	0	3	37	1.16
15071227--15071267	20	2.0	21	85	4	57	70	0	4	24	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15071348--15071414	29	2.4	27	81	11	82	49	1	5	43	1.36
15072859--15072890	17	1.9	16	93	6	55	40	3	6	50	1.43
15074781--15074811	15	2.1	15	100	0	62	32	0	6	61	1.21
15076078--15076124	22	2.1	22	88	0	67	51	0	0	48	1.00
15076188--15076219	12	2.6	13	85	14	50	71	0	0	28	0.86
15077436--15077619	58	3.1	58	71	16	183	45	11	19	24	1.83
15090549--15090644	34	2.8	34	82	0	120	31	9	20	38	1.85
15098632--15099136	185	2.7	184	84	3	651	36	12	10	39	1.78
15099029--15099275	124	2.0	124	90	1	388	35	12	11	40	1.79
15099036--15099227	61	3.1	61	65	14	149	35	11	10	42	1.76
15104992--15105024	17	2.0	16	94	5	57	39	12	0	48	1.40
15106743--15106781	13	2.9	13	88	3	60	71	2	0	25	0.98
15106976--15107001	12	2.2	12	100	0	52	38	0	0	61	0.96
15108366--15108397	17	1.9	16	93	6	55	43	3	3	50	1.33
15110037--15110104	25	2.7	26	72	9	68	33	2	0	63	1.10
15111832--15111865	16	2.1	16	89	10	52	47	0	2	50	1.16
15115643--15115671	14	2.1	14	100	0	58	44	6	13	34	1.71
15115834--15116017	58	3.1	58	71	16	183	45	11	19	24	1.83
15135455--15135485	1	31.0	1	93	0	53	0	0	3	96	0.21
15135595--15135688	34	2.8	34	71	0	89	31	9	20	38	1.85
15143588--15143811	120	1.9	122	82	5	285	36	12	12	37	1.83
15143663--15144184	186	2.8	185	84	3	647	36	12	10	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15143662--15144185	187	2.8	184	84	2	665	36	12	10	40	1.77
15144066--15144308	124	2.0	124	89	1	371	34	12	12	39	1.81
15144069--15144260	61	3.1	61	67	14	158	33	12	11	41	1.80
15150043--15150074	16	2.0	16	100	0	64	37	12	0	50	1.41
15151054--15151117	24	2.7	24	71	9	67	43	1	0	54	1.09
15153271--15153314	24	1.9	23	86	9	63	54	0	2	43	1.12
15153271--15153317	22	2.1	22	84	7	60	51	0	2	46	1.13
15154435--15154473	19	2.1	19	90	9	62	23	5	0	71	1.05
15154436--15154492	29	2.0	29	86	13	82	22	7	0	70	1.11
15154505--15154569	11	5.9	11	70	12	53	72	1	3	23	1.07
15155593--15155632	16	2.5	17	88	8	57	15	7	0	77	0.98
15155592--15155660	31	2.4	28	81	13	79	18	8	0	72	1.10
15155712--15155785	30	2.4	30	74	17	71	67	2	8	21	1.29
15158507--15158572	11	5.9	11	81	16	82	30	1	0	68	0.99
15158507--15158551	20	2.2	21	96	4	83	26	0	0	73	0.84
15158554--15158588	13	2.5	15	90	9	56	40	0	0	60	0.97
15158472--15158595	46	2.7	45	73	12	110	37	1	0	61	1.06
15159765--15159838	34	2.2	33	83	4	87	43	1	4	51	1.29
15159785--15159836	22	2.3	23	83	3	61	46	0	3	50	1.20
15160392--15160435	22	2.0	22	86	8	63	45	0	4	50	1.22
15169116--15169144	2	14.5	2	100	0	58	51	0	0	48	1.00
15169322--15169357	2	18.0	2	88	0	54	44	0	5	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15170157--15170217	15	4.1	14	74	14	59	39	0	6	54	1.27
15170239--15170284	21	2.1	22	84	4	58	45	0	0	54	0.99
15170285--15170315	16	2.0	15	93	6	53	38	0	0	61	0.96
15194090--15194160	29	2.4	28	72	23	65	35	4	2	57	1.33
15199594--15199633	20	2.0	21	90	5	64	57	0	0	42	0.98
15200805--15200857	19	2.7	18	78	21	61	47	0	0	52	1.00
15200810--15200854	21	2.1	21	95	4	81	48	0	0	51	1.00
15201076--15201139	27	2.5	25	75	20	69	60	4	3	31	1.32
15214446--15214489	13	2.9	16	77	19	58	59	6	0	34	1.24
15215292--15215350	15	3.9	15	76	14	59	62	6	0	30	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129