Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  97  of  129  ( 15374 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16100647--16100677
15
2.1
15
93
0
53
32
16
16
35
1.91
16100944--16100989
24
1.9
24
95
0
83
34
4
23
36
1.75
16101582--16101627
21
2.2
21
84
7
58
28
36
19
15
1.92
16104861--16104920
21
2.8
21
68
12
50
38
3
1
56
1.26
16104847--16105258
213
1.9
217
80
6
491
31
11
6
50
1.63
16105370--16105407
20
1.9
19
85
15
51
34
5
5
55
1.45
16105744--16105786
17
2.5
17
84
3
59
20
4
2
72
1.14
16106227--16106763
210
2.5
214
77
12
505
30
10
5
54
1.56
16106283--16106893
210
2.8
215
75
11
536
31
10
5
52
1.59
16106896--16106954
18
3.3
18
77
13
50
33
1
1
62
1.15
16105296--16107910
933
2.8
927
80
8
2629
31
10
5
51
1.60
16107142--16107947
220
3.7
220
78
6
690
31
11
7
50
1.65
16107564--16108008
221
2.0
219
80
5
486
30
12
7
49
1.68
16108392--16108425
15
2.3
15
89
0
50
17
0
0
82
0.67
16109099--16109137
2
20.0
2
84
5
53
48
5
0
46
1.24
16110578--16110653
38
2.0
38
89
0
116
35
15
11
36
1.85
16112104--16112131
14
2.0
14
100
0
56
14
14
21
50
1.78
16115866--16115925
17
3.4
17
70
17
59
26
6
15
51
1.67
16115856--16115937
36
2.3
36
100
0
164
26
9
13
50
1.73
16116785--16116858
36
2.1
36
87
5
105
40
27
6
25
1.80
16120348--16120403
19
2.9
19
80
12
69
10
14
1
73
1.18
16120992--16121042
15
3.4
15
81
8
50
62
1
0
35
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16122955--16123005
20
2.6
19
84
9
66
17
9
15
56
1.65
16123042--16123097
23
2.3
23
78
12
58
32
3
10
53
1.53
16132733--16132785
20
2.6
21
82
8
65
15
18
24
41
1.89
16132844--16132897
21
2.6
20
80
11
56
20
22
29
27
1.98
16133587--16133624
18
2.0
20
85
10
53
50
0
2
47
1.15
16135007--16135110
52
2.0
51
85
5
138
27
13
7
50
1.68
16135007--16135110
51
2.0
52
85
5
140
27
13
7
50
1.68
16135868--16136413
145
3.8
145
79
6
518
30
15
13
39
1.86
16141528--16141580
14
3.7
14
81
16
56
75
1
5
16
1.08
16141528--16141606
27
2.9
29
73
19
80
72
3
5
18
1.19
16142285--16142394
37
3.0
37
85
1
141
35
21
17
25
1.95
16142430--16142525
3
32.7
3
79
12
101
62
4
2
31
1.26
16142455--16142534
41
2.0
41
85
5
108
60
6
3
30
1.39
16142496--16142535
18
2.2
18
86
8
55
62
5
5
27
1.37
16143100--16143244
65
2.2
65
81
1
157
45
16
18
19
1.86
16144711--16144737
14
1.9
14
100
0
54
0
18
7
74
1.05
16145028--16145075
1
48.0
1
80
0
51
2
4
4
89
0.64
16145028--16145075
19
2.5
19
84
15
64
2
4
4
89
0.64
16145035--16145077
17
2.6
16
92
3
68
4
2
4
88
0.70
16145745--16145828
41
2.0
41
95
0
150
23
10
26
39
1.87
16147895--16147990
47
2.1
46
96
2
174
62
4
13
19
1.47
16148812--16148890
27
2.9
29
73
19
80
73
2
2
21
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16148810--16148864
14
3.9
13
77
13
56
76
1
1
20
0.97
16148810--16148864
20
2.5
22
77
16
62
76
1
1
20
0.97
16148873--16148911
20
1.9
21
89
5
62
71
2
7
17
1.21
16149586--16149679
37
2.5
37
85
0
116
34
22
21
22
1.97
16149725--16149832
3
36.3
3
80
9
114
62
3
1
32
1.24
16150050--16150087
15
2.4
16
86
4
51
65
0
0
34
0.93
16150284--16150321
3
13.0
3
88
5
60
68
2
0
28
1.03
16151814--16151879
32
2.0
33
91
2
107
30
10
10
48
1.71
16158990--16159014
4
6.2
4
100
0
50
24
0
0
76
0.80
16164687--16164726
19
2.0
20
90
4
64
40
30
10
20
1.85
16165100--16165124
2
12.5
2
100
0
50
48
0
0
52
1.00
16165312--16165359
2
26.5
2
80
19
61
52
0
0
47
1.00
16174392--16174417
12
2.2
12
100
0
52
38
38
15
7
1.76
16175053--16175126
26
3.0
25
79
16
68
44
0
1
54
1.08
16177507--16177544
17
2.2
18
85
4
51
15
7
0
76
1.01
16178366--16178398
6
5.5
6
92
0
57
0
18
0
81
0.68
16178361--16178398
12
3.2
12
88
0
58
0
23
0
76
0.79
16178917--16178950
16
2.0
18
88
11
54
32
2
0
64
1.08
16179935--16179995
26
2.3
26
97
0
113
42
13
13
31
1.82
16182731--16182788
24
2.4
24
79
2
71
62
12
3
22
1.45
16184786--16184842
24
2.3
24
82
11
71
66
0
1
31
1.02
16185638--16185687
19
2.7
18
78
6
55
16
6
34
44
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16185729--16185857
56
2.3
55
78
4
132
16
3
35
44
1.63
16185852--16185906
27
2.0
27
82
6
67
20
0
32
47
1.50
16185881--16186178
39
7.8
39
69
13
163
14
3
36
46
1.60
16185898--16186179
59
4.9
56
73
16
204
14
3
36
45
1.61
16185898--16186178
115
2.4
114
87
5
395
14
3
37
45
1.61
16185898--16186178
19
14.7
19
68
16
100
14
3
37
45
1.61
16185847--16186213
20
18.9
18
68
15
94
14
2
35
47
1.57
16186628--16186667
20
2.0
20
95
0
71
57
10
7
25
1.57
16186629--16186678
20
2.5
20
87
6
66
62
12
6
20
1.50
16187249--16187294
22
2.1
22
84
11
60
58
10
13
17
1.62
16189064--16189111
21
2.2
21
85
10
62
35
2
2
60
1.20
16191323--16191436
35
3.4
34
81
12
103
31
19
16
32
1.94
16198888--16198914
3
9.0
3
100
0
54
66
0
0
33
0.92
16200650--16200684
17
2.1
17
89
5
54
25
11
11
51
1.71
16202629--16202693
29
2.2
30
88
2
96
32
0
1
66
1.01
16202619--16202708
29
2.8
31
78
13
94
30
1
4
64
1.20
16205947--16205984
19
1.9
19
85
15
51
31
2
0
65
1.06
16208137--16208167
2
15.5
2
100
0
62
51
0
0
48
1.00
16220996--16221131
60
2.3
61
77
12
138
58
7
2
31
1.41
16221036--16221109
21
3.7
20
75
12
62
60
4
1
33
1.24
16221199--16221265
10
6.8
10
72
16
59
59
1
2
35
1.22
16221199--16221263
21
3.3
19
85
10
85
61
1
3
33
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16221200--16221242
9
4.6
9
80
11
50
58
2
4
34
1.32
16221388--16221424
10
3.7
10
85
0
56
56
2
0
40
1.13
16221376--16221432
20
3.0
18
82
12
69
54
8
0
36
1.32
16221552--16221586
17
2.1
17
88
0
52
71
0
0
28
0.86
16221836--16222142
10
31.0
10
66
13
116
38
4
5
52
1.44
16221839--16222008
9
17.6
9
73
16
110
37
4
3
54
1.39
16221830--16222253
10
43.3
10
67
12
80
33
3
6
56
1.41
16221868--16221983
61
1.9
61
81
10
139
38
4
3
53
1.38
16221963--16222008
19
2.5
19
89
3
67
41
2
4
52
1.33
16222063--16222121
21
2.8
21
87
5
84
47
1
3
47
1.29
16222135--16222205
18
3.8
17
78
15
70
21
2
2
73
1.09
16222135--16222205
19
3.8
18
80
9
79
21
2
2
73
1.09
16222173--16222233
19
3.3
19
79
6
63
27
0
9
62
1.27
16222217--16222258
21
2.0
22
85
4
59
19
2
11
66
1.34
16227873--16227905
17
1.9
17
93
0
57
45
0
0
54
0.99
16227917--16228007
33
2.9
33
74
9
91
59
2
2
36
1.22
16227973--16228054
29
2.8
28
79
5
92
57
0
3
39
1.16
16229213--16229267
28
2.0
28
92
0
92
41
14
9
34
1.77
16229305--16229340
18
2.0
18
89
10
56
69
0
2
27
1.02
16229763--16229806
23
2.0
22
81
4
52
38
2
2
56
1.24
16231210--16231239
6
4.8
6
92
8
51
66
0
0
33
0.92
16231210--16231239
13
2.4
13
94
5
53
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16234772--16234821
22
2.5
20
81
12
66
50
0
0
50
1.00
16234782--16234828
22
2.0
24
88
8
71
51
0
0
48
1.00
16241404--16241468
34
1.9
34
84
6
87
35
15
6
43
1.72
16242774--16242820
15
3.1
15
77
14
51
51
6
0
42
1.27
16243075--16243109
3
11.7
3
100
0
70
65
0
0
34
0.93
16243711--16243780
4
16.5
4
74
11
59
57
2
1
38
1.23
16244781--16244922
8
17.6
8
68
20
64
50
0
0
48
1.05
16244791--16244974
23
7.7
23
69
20
85
48
0
0
50
1.09
16244791--16244937
23
6.6
22
72
16
90
48
0
0
50
1.10
16244781--16244972
36
5.3
35
76
13
142
50
0
0
48
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129