genome.fa.s24.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  108  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18023521--18023549	14	2.0	15	93	6	51	68	0	3	27	1.05
18032732--18033330	150	4.0	150	87	2	857	37	13	25	23	1.91
18032732--18033326	297	2.0	298	88	3	885	37	13	26	23	1.91
18037511--18037580	28	2.5	29	79	6	74	62	0	0	37	0.95
18038902--18038933	3	10.7	3	100	0	64	65	0	0	34	0.93
18044385--18044413	10	2.9	10	100	0	58	48	10	0	41	1.37
18045824--18045849	9	2.9	9	100	0	52	0	0	34	65	0.93
18046229--18047421	357	3.3	353	84	4	1491	35	11	15	37	1.83
18057042--18057096	22	2.5	22	85	2	76	40	7	7	45	1.60
18057418--18057561	22	6.6	22	70	4	67	34	9	4	51	1.55
18060455--18060496	15	3.1	14	83	12	52	76	4	7	11	1.15
18072124--18072248	18	6.9	18	72	13	105	28	4	34	32	1.78
18072123--18072221	33	2.9	35	83	4	139	27	5	32	35	1.79
18072202--18072242	21	2.0	21	90	0	64	31	2	36	29	1.71
18075983--18076031	25	1.9	26	91	4	82	40	10	2	46	1.49
18076257--18076294	20	2.0	20	89	5	60	60	5	0	34	1.19
18076500--18076595	39	2.5	38	88	5	147	21	62	2	13	1.41
18078943--18078987	22	2.1	21	87	4	63	22	4	6	66	1.33
18079850--18080142	160	1.8	159	82	2	381	26	15	11	46	1.81
18080108--18080241	55	2.4	55	79	0	151	29	8	13	48	1.73
18080347--18080393	24	2.0	24	83	8	60	42	2	0	55	1.12
18080525--18080553	15	1.9	15	100	0	58	68	17	0	13	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18082952--18083118	60	2.9	58	85	6	189	32	8	7	50	1.62
18082990--18083367	58	6.2	58	72	20	229	35	9	5	48	1.60
18083115--18083367	58	4.3	58	84	6	287	37	10	5	47	1.61
18083524--18083561	3	12.7	3	100	0	76	68	0	0	31	0.90
18084241--18084339	19	5.3	19	73	19	75	68	0	3	28	1.04
18084243--18084334	3	31.0	3	71	20	61	68	0	3	28	1.05
18084242--18084334	34	2.9	30	76	21	98	68	0	3	27	1.04
18084242--18084323	34	2.5	33	83	16	102	69	0	2	28	1.01
18084239--18084339	30	3.5	29	75	15	93	68	0	3	27	1.07
18084656--18084807	45	3.5	43	82	8	175	40	16	14	28	1.87
18084656--18084891	45	5.2	45	73	13	171	40	17	15	26	1.89
18096515--18096625	59	1.9	59	83	5	145	38	12	3	45	1.60
18096392--18096632	131	1.8	132	84	5	337	37	9	4	48	1.57
18096737--18096769	14	2.3	15	89	5	50	33	0	3	63	1.10
18096678--18096892	73	2.9	74	89	6	296	35	10	4	49	1.57
18096864--18096893	15	1.9	16	93	6	53	40	10	0	50	1.36
18096938--18096966	11	2.7	11	94	5	51	79	0	0	20	0.74
18097724--18097797	4	18.5	4	72	10	62	74	0	2	22	0.95
18097736--18097822	33	2.7	33	84	8	115	72	1	4	21	1.09
18097724--18097813	12	8.6	11	70	22	61	73	1	2	23	1.01
18098468--18098512	23	2.0	23	82	8	56	53	4	11	31	1.56
18099805--18099860	16	3.4	16	79	13	69	19	0	30	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18099809--18099868	15	3.8	15	79	12	57	20	0	30	50	1.49
18099879--18099914	10	3.9	10	79	20	51	11	0	44	44	1.39
18099835--18100069	92	2.6	92	92	2	384	22	3	29	43	1.70
18099879--18100047	17	9.6	17	71	19	105	21	1	32	44	1.63
18100115--18100213	16	6.1	16	74	6	92	18	2	35	44	1.61
18100098--18100211	33	3.5	33	79	8	108	18	2	34	44	1.64
18101606--18101652	3	16.7	3	78	12	55	31	0	0	68	0.90
18105541--18105588	20	2.2	23	78	14	57	25	8	14	52	1.69
18106764--18106822	22	2.6	22	81	10	57	37	11	13	37	1.82
18108355--18108395	6	6.8	6	79	20	50	0	12	2	85	0.70
18108355--18108398	11	3.7	11	88	11	61	0	11	2	86	0.66
18108735--18108764	13	2.4	13	94	5	53	6	0	6	86	0.70
18114647--18114684	20	2.0	20	89	5	60	26	0	5	68	1.11
18118895--18118941	23	2.1	22	85	14	62	46	0	4	48	1.21
18119329--18119373	22	2.0	22	86	0	63	66	0	4	28	1.11
18119931--18119967	14	2.4	16	78	17	51	48	0	2	48	1.15
18119931--18119989	30	1.9	31	86	3	84	49	3	3	44	1.36
18120182--18120228	15	3.0	15	81	15	51	57	0	0	42	0.98
18120182--18120228	14	3.0	16	81	15	53	57	0	0	42	0.98
18121448--18121491	16	2.8	16	100	0	88	68	4	0	27	1.09
18123964--18123988	12	2.1	12	100	0	50	56	0	0	44	0.99
18124128--18124162	15	2.5	15	90	9	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18134893--18134935	21	2.0	21	91	8	70	67	0	0	32	0.91
18138878--18138923	12	3.9	12	72	16	51	54	19	6	19	1.66
18138928--18139081	20	7.8	20	76	7	125	54	11	5	27	1.59
18138959--18138997	19	2.1	19	90	0	60	51	10	10	28	1.68
18140779--18140889	43	2.6	43	81	7	118	41	12	12	33	1.81
18140872--18141112	37	6.4	36	76	12	175	42	11	10	34	1.76
18140872--18141039	75	2.2	73	84	8	203	41	10	11	36	1.76
18140919--18141072	75	2.0	75	83	6	195	45	11	8	34	1.71
18140896--18141109	112	1.9	111	83	2	277	41	12	11	35	1.78
18140944--18141151	112	1.9	112	80	6	251	42	13	10	32	1.79
18141235--18141329	48	2.0	48	89	4	147	38	21	10	29	1.86
18143893--18144137	44	5.6	44	76	8	198	47	15	10	26	1.78
18143887--18144137	88	2.9	88	78	9	232	46	15	11	27	1.79
18143905--18144216	44	7.2	44	77	9	166	49	15	9	25	1.75
18144075--18144172	42	2.3	43	84	7	128	52	13	10	24	1.71
18144668--18144744	21	3.6	21	84	3	91	41	16	6	35	1.75
18144683--18144747	22	3.0	22	90	2	96	44	18	3	33	1.65
18145779--18145856	28	2.5	32	84	12	110	10	20	0	69	1.17
18145763--18145868	8	13.8	8	69	21	57	11	17	0	70	1.15
18150197--18150542	191	1.8	192	82	3	455	34	9	8	47	1.66
18151504--18151551	13	3.7	14	78	10	50	72	6	2	18	1.15
18151741--18151774	7	5.1	7	92	7	54	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18151796--18151921	4	33.2	4	70	13	63	28	3	2	65	1.20
18151796--18151923	10	11.6	11	70	17	88	28	3	2	65	1.20
18151796--18151921	26	4.9	25	76	13	105	28	3	2	65	1.20
18151804--18151932	47	2.7	49	80	11	133	29	3	1	65	1.20
18151860--18151930	26	2.7	26	77	16	76	30	2	2	63	1.23
18151937--18151988	20	2.6	19	73	8	59	21	5	3	69	1.26
18151972--18152034	22	2.9	22	76	19	69	20	7	1	69	1.22
18152887--18152922	18	1.9	19	88	5	56	11	2	5	80	0.98
18152883--18152941	14	4.1	14	78	10	57	13	1	5	79	0.97
18152962--18153018	19	2.9	19	80	12	62	17	3	0	78	0.88
18153056--18153519	59	7.7	58	77	13	413	45	6	12	35	1.68
18153130--18153519	120	3.3	118	83	9	472	45	6	12	35	1.69
18155321--18155363	23	1.9	23	90	4	70	0	9	4	86	0.71
18158255--18158290	17	2.0	19	89	10	58	61	2	0	36	1.11
18158303--18158383	31	2.7	30	80	3	99	44	1	2	51	1.22
18158321--18158383	15	4.1	15	79	4	63	46	1	3	49	1.27
18158346--18158384	19	2.1	19	90	0	60	48	2	0	48	1.15
18160416--18160449	17	1.9	17	88	5	50	35	29	8	26	1.87
18161499--18161634	56	2.4	56	79	2	148	31	15	20	32	1.94
18162528--18162590	32	2.0	32	83	0	81	52	1	0	46	1.10
18170677--18170717	20	2.1	19	86	4	55	58	12	19	9	1.61
18173373--18173414	2	21.0	2	100	0	84	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18173414--18173443	2	15.0	2	100	0	60	50	50	0	0	1.00
18179844--18179871	7	4.0	7	100	0	56	28	42	14	14	1.84
18179835--18179870	14	2.6	14	90	0	54	30	41	11	16	1.83
18192872--18192908	15	2.5	15	90	0	56	72	0	2	24	0.97
18196601--18196632	12	2.8	12	95	4	57	65	0	0	34	0.93
18204112--18204145	17	1.9	18	94	5	61	85	0	0	14	0.60
18213742--18213770	13	2.3	13	94	5	51	41	0	3	55	1.17
18215981--18216009	10	2.9	10	100	0	58	10	37	41	10	1.73
18216144--18216198	22	2.5	20	77	16	56	49	1	9	40	1.45
18222769--18222810	15	2.8	15	82	7	50	14	9	0	76	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129