genome.fa.s24.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  105  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17408043--17408081	20	1.9	21	85	15	55	56	7	0	35	1.28
17408173--17408211	20	2.0	19	85	5	51	41	28	12	17	1.87
17408919--17408978	28	2.1	28	84	0	75	73	3	1	21	1.07
17409429--17409457	2	14.5	2	100	0	58	48	0	0	51	1.00
17410007--17410049	16	2.6	17	85	10	63	46	2	2	48	1.27
17410410--17410442	12	2.6	13	90	4	50	75	0	6	18	1.00
17410423--17410494	35	2.1	34	81	2	81	68	6	9	15	1.39
17410801--17410848	7	6.7	7	79	13	53	83	0	8	8	0.82
17412287--17412330	20	2.1	22	83	8	56	56	0	2	40	1.11
17412586--17412621	13	2.6	13	91	8	54	88	0	5	5	0.61
17415600--17415722	63	2.0	63	80	3	140	43	13	8	35	1.73
17415782--17415811	13	2.3	13	94	0	51	23	13	0	63	1.29
17422471--17422501	7	4.4	7	100	0	62	0	25	0	74	0.82
17431491--17431904	213	1.9	214	87	3	611	41	12	9	35	1.76
17432444--17432510	21	3.1	21	71	14	57	43	7	4	44	1.52
17432838--17432891	22	2.5	22	84	6	65	40	7	3	48	1.49
17432965--17433076	22	5.0	22	75	1	107	39	12	2	45	1.56
17432965--17433240	44	6.0	44	69	14	139	39	11	4	44	1.60
17432808--17433240	185	2.3	185	91	3	710	39	10	5	45	1.61
17433156--17433253	22	4.5	22	80	3	99	40	13	4	41	1.63
17433236--17433284	22	2.2	22	78	7	55	34	8	6	51	1.57
17433243--17433299	22	2.6	21	83	8	69	31	5	7	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17433334--17433403	22	3.2	22	70	9	63	40	8	1	50	1.42
17433334--17433416	43	1.9	44	82	2	105	37	8	3	50	1.50
17433905--17434031	22	5.8	21	77	7	85	39	4	4	51	1.44
17433903--17434100	44	4.5	43	70	11	150	39	4	6	49	1.48
17433884--17434101	22	10.0	21	72	6	82	40	4	6	48	1.49
17434140--17434198	22	2.7	22	75	0	64	42	10	1	45	1.48
17434178--17434302	22	5.8	22	73	9	87	36	8	4	51	1.52
17434203--17434258	19	2.8	19	81	8	58	41	10	3	44	1.56
17434374--17434455	22	3.8	21	69	7	58	39	4	4	51	1.45
17434476--17434564	22	4.0	22	79	0	88	37	12	2	48	1.53
17434486--17434576	22	4.1	22	75	10	78	36	12	1	50	1.47
17434643--17434688	23	2.0	23	83	8	58	30	6	6	56	1.50
17434780--17434827	22	2.3	21	79	17	55	37	16	0	45	1.48
17434798--17434837	20	2.0	20	95	0	71	37	12	0	50	1.41
17434851--17434898	20	2.4	20	100	0	96	45	14	4	35	1.64
17435298--17435336	13	2.9	13	88	3	51	71	5	5	17	1.23
17437067--17437504	149	2.9	149	85	3	596	37	12	6	43	1.69
17438977--17439024	17	3.0	16	82	8	55	45	2	0	52	1.12
17438977--17439042	33	2.1	30	83	8	78	46	3	0	50	1.16
17440203--17440236	17	2.0	17	94	0	59	67	5	0	26	1.13
17440635--17440665	16	2.0	16	93	6	55	77	12	6	3	1.08
17445081--17445133	26	2.0	26	100	0	88	49	7	15	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17450587--17450626	17	2.4	17	87	4	55	42	0	0	57	0.98
17451162--17451209	11	4.1	12	86	7	55	60	0	0	39	0.97
17451184--17451222	14	2.6	15	88	8	53	74	0	0	25	0.82
17457564--17457594	8	3.8	8	95	4	53	54	0	0	45	0.99
17458914--17458944	15	2.0	16	93	6	55	77	0	6	16	0.97
17469540--17469634	29	3.3	29	69	16	99	43	0	8	48	1.33
17469536--17469686	56	2.7	56	96	1	277	42	0	9	47	1.37
17469569--17469661	27	3.4	27	68	16	82	45	0	11	43	1.41
17470333--17470362	14	2.1	14	100	0	60	40	6	6	46	1.56
17473018--17473250	111	2.1	107	88	6	344	54	11	10	23	1.67
17473530--17473582	26	2.0	27	82	10	65	35	3	1	58	1.27
17473574--17473638	29	2.2	29	80	0	76	35	4	4	55	1.41
17473603--17473638	17	2.0	19	89	10	58	30	2	5	61	1.33
17473721--17473779	17	3.4	17	73	13	57	40	1	3	54	1.27
17473729--17473782	18	3.1	18	72	5	65	37	3	3	55	1.35
17473714--17473782	35	1.9	36	91	2	113	39	2	4	53	1.36
17473771--17473835	26	2.5	26	82	2	76	41	6	1	50	1.36
17473902--17474003	10	10.1	10	75	14	93	37	0	7	53	1.36
17474114--17474138	7	3.6	7	100	0	50	60	12	0	28	1.32
17476598--17476663	30	2.2	29	86	2	96	30	16	9	43	1.79
17476686--17476820	61	2.3	57	80	11	139	40	5	17	37	1.72
17476726--17476819	30	3.2	30	74	7	86	40	6	15	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17477705--17477755	9	6.1	8	78	17	59	80	1	3	13	0.94
17478495--17478535	12	3.3	13	83	10	50	21	0	7	70	1.11
17478760--17478793	11	3.1	11	95	0	59	61	0	0	38	0.96
17483119--17483187	26	2.5	28	81	11	90	78	0	10	11	0.97
17483764--17483806	22	2.0	22	82	17	54	46	2	23	27	1.64
17486832--17487186	119	3.0	119	84	7	429	46	5	11	37	1.63
17486852--17487186	58	5.7	60	80	9	343	45	5	11	37	1.64
17491824--17491862	21	1.9	20	89	5	60	69	0	20	10	1.17
17491850--17491875	8	3.2	8	100	0	52	76	0	11	11	1.01
17493721--17493885	41	4.0	41	82	7	183	27	15	17	39	1.90
17493725--17493885	83	1.9	82	82	9	202	27	14	17	40	1.89
17494012--17494060	17	2.9	16	80	20	55	87	4	2	6	0.72
17494199--17494240	13	3.7	11	82	14	50	23	7	2	66	1.28
17494209--17494238	13	2.3	13	94	0	51	23	6	3	66	1.30
17497310--17497334	13	1.9	13	100	0	50	64	4	0	32	1.12
17497089--17497595	58	8.7	58	82	7	492	43	6	12	37	1.68
17498461--17498580	21	5.7	21	77	6	100	37	4	16	41	1.68
17498461--17498583	43	2.9	43	74	12	128	37	4	17	41	1.68
17499054--17499345	40	7.4	40	80	3	295	24	12	17	45	1.83
17499060--17499345	120	2.4	119	81	2	326	24	12	16	46	1.82
17499206--17499375	40	4.2	41	77	8	116	25	12	18	43	1.85
17500311--17500350	12	3.3	12	83	10	55	17	0	10	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17506684--17506728	23	2.0	23	83	12	58	35	0	6	57	1.25
17522646--17522724	42	1.9	41	87	7	115	45	2	2	49	1.29
17522707--17522763	24	2.3	25	81	6	71	61	0	0	38	0.96
17524791--17524885	35	2.8	36	72	9	85	40	5	8	46	1.57
17536459--17536488	15	2.0	15	93	0	51	53	16	0	30	1.44
17536488--17536564	24	3.1	25	76	10	70	58	6	7	27	1.51
17536578--17536660	43	1.9	44	85	4	116	60	12	4	22	1.51
17538891--17538972	18	4.3	18	73	14	51	37	6	24	31	1.80
17538929--17538972	21	2.1	21	83	8	54	43	6	22	27	1.78
17539292--17539341	6	8.3	6	93	0	82	32	48	0	20	1.50
17542717--17542757	20	2.0	21	85	9	57	58	7	0	34	1.26
17548310--17548357	15	3.4	15	77	16	66	20	0	56	22	1.43
17548301--17548360	27	2.2	27	100	0	120	21	0	55	23	1.44
17548606--17548647	20	2.0	21	86	4	59	16	0	14	69	1.20
17552196--17552274	18	4.6	18	73	9	65	36	29	5	29	1.79
17561074--17561174	11	8.3	13	68	20	51	53	0	0	46	1.00
17561087--17561155	21	3.1	22	76	16	70	53	0	0	46	1.00
17561086--17561179	44	2.1	44	81	13	104	52	0	0	47	1.00
17565388--17565445	27	2.1	29	81	12	68	27	3	0	68	1.05
17570526--17570564	20	2.0	20	89	0	60	46	12	12	28	1.79
17574017--17574553	166	3.3	167	77	12	449	43	9	7	40	1.64
17574286--17574671	156	2.5	153	81	4	459	43	9	6	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17576481--17576525	21	2.1	21	88	8	65	24	4	2	68	1.19
17576761--17576802	15	2.8	15	86	13	52	19	7	0	73	1.05
17577980--17578471	182	2.7	179	80	7	478	35	10	8	44	1.69
17578221--17578383	58	2.7	61	80	4	179	34	11	6	47	1.64
17579495--17579528	18	1.9	17	88	5	50	58	0	0	41	0.98
17580108--17580252	11	14.5	10	69	18	63	59	7	3	29	1.42
17580143--17580187	19	2.4	19	82	17	58	71	6	0	22	1.09
17580224--17580278	10	5.4	10	79	10	58	65	5	1	27	1.25
17580356--17580397	18	2.4	17	92	4	66	59	11	0	28	1.33
17580355--17580405	18	2.8	18	76	8	50	60	11	0	27	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129