genome.fa.s24.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  128  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22658191--22658218	2	14.0	2	100	0	56	0	50	0	50	1.00
22658791--22658825	17	2.0	18	88	5	54	25	5	0	68	1.11
22664518--22664553	11	3.3	11	88	0	54	52	0	0	47	1.00
22664522--22664552	16	1.9	16	93	0	53	58	0	0	41	0.98
22664642--22664714	20	3.7	20	76	10	78	36	0	0	63	0.95
22670242--22670267	6	4.3	6	100	0	52	50	15	0	34	1.45
22671172--22671222	18	2.7	19	78	9	59	47	1	3	47	1.32
22671409--22671462	27	2.0	26	85	3	72	35	1	0	62	1.06
22678901--22679177	144	1.9	144	88	0	419	43	11	21	23	1.85
22689799--22689837	20	2.0	20	100	0	78	33	5	15	46	1.68
22694740--22694789	25	2.0	25	84	7	66	20	20	18	42	1.90
22698540--22698585	20	2.3	20	85	7	58	36	0	2	60	1.09
22698610--22698657	24	2.0	25	84	12	64	60	0	0	39	0.97
22698609--22698659	11	4.2	12	80	14	61	62	0	0	37	0.95
22698609--22698659	13	4.2	13	80	9	56	62	0	0	37	0.95
22699093--22699155	32	1.9	33	93	3	110	46	17	4	31	1.69
22708436--22708464	2	14.5	2	100	0	58	0	48	0	51	1.00
22721847--22721940	32	3.1	32	60	17	74	51	9	11	27	1.69
22721833--22721948	58	2.0	58	96	0	214	49	7	14	28	1.71
22723951--22723994	2	22.0	2	100	0	88	50	0	0	50	1.00
22728402--22728430	15	2.0	15	93	6	51	51	0	0	48	1.00
22732950--22732974	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22740652--22740684	12	2.8	12	86	4	50	39	0	3	57	1.14
22746302--22746326	3	8.3	3	100	0	50	36	0	0	64	0.94
22748254--22748345	30	3.1	30	79	6	80	58	6	4	30	1.43
22754762--22754787	13	2.0	13	100	0	52	30	23	0	46	1.53
22757203--22757253	23	2.2	23	100	0	102	21	31	15	31	1.95
22758050--22758083	3	11.3	3	100	0	68	0	35	0	64	0.94
22759252--22759302	22	2.5	20	75	12	57	45	0	1	52	1.12
22759307--22759372	31	2.2	31	91	2	107	54	4	1	39	1.30
22759374--22759429	28	2.0	27	86	3	76	37	0	1	60	1.07
22763870--22763967	41	2.4	42	87	1	144	33	12	27	26	1.92
22781848--22781879	1	32.0	1	100	0	64	0	0	0	100	0.00
22782400--22782427	6	4.7	6	100	0	56	14	0	0	85	0.59
22782546--22782614	15	4.6	14	70	18	50	50	1	0	47	1.09
22782588--22782630	19	2.2	20	84	16	54	58	0	0	41	0.98
22782604--22782646	19	2.2	20	84	8	54	55	0	0	44	0.99
22786729--22786754	10	2.6	10	100	0	52	7	0	0	92	0.39
22790941--22790977	2	18.5	2	88	0	56	0	48	0	51	1.00
22796488--22796546	28	2.0	31	87	9	88	47	1	5	45	1.34
22796488--22796555	28	2.6	27	82	13	79	47	1	4	47	1.31
22799713--22799739	14	1.9	14	100	0	54	66	3	0	29	1.09
22799713--22799746	17	2.1	17	94	5	61	67	2	0	29	1.05
22799956--22800002	15	3.1	15	73	14	51	59	2	2	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22800056--22800106	19	2.8	19	77	13	54	52	0	1	45	1.12
22802328--22802373	2	24.5	2	82	12	62	50	0	2	47	1.13
22803830--22803870	3	13.7	3	86	0	55	31	2	2	63	1.20
22804788--22804820	2	16.5	2	100	0	66	51	0	0	48	1.00
22805041--22805069	3	9.7	3	100	0	58	65	0	0	34	0.93
22805217--22805249	2	16.5	2	100	0	66	51	0	0	48	1.00
22810458--22810575	62	1.9	62	82	5	150	34	12	14	38	1.84
22810590--22810735	62	2.3	62	77	3	168	45	12	8	34	1.72
22810560--22811129	125	4.6	122	78	7	409	40	10	12	37	1.77
22810705--22811160	126	3.6	122	77	9	393	39	10	12	37	1.78
22813316--22813378	3	21.0	3	96	0	117	66	1	0	31	1.01
22813498--22813695	97	2.1	96	84	6	258	41	17	10	29	1.83
22813498--22813762	147	1.8	144	82	7	338	40	17	12	29	1.86
22813498--22813762	48	5.5	48	78	6	257	40	17	12	29	1.86
22813897--22814269	99	3.8	95	85	5	340	42	20	11	26	1.86
22813935--22814271	99	3.4	97	86	5	426	41	19	12	26	1.86
22814218--22814326	57	1.9	57	83	3	139	44	18	11	25	1.84
22814022--22814524	255	2.0	255	84	1	659	42	20	12	24	1.86
22814257--22814639	99	3.9	99	82	1	453	42	20	13	23	1.87
22814111--22814443	156	2.1	156	85	1	461	44	20	11	24	1.83
22814275--22814643	198	1.9	198	86	1	533	42	20	13	23	1.87
22813935--22814641	354	2.0	354	83	2	884	42	20	12	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22814593--22814641	23	2.1	24	84	3	64	48	22	10	18	1.77
22814657--22814761	42	2.5	41	84	3	147	40	21	15	21	1.90
22821345--22821378	12	2.7	13	90	4	52	70	5	0	23	1.09
22827799--22828642	161	5.2	160	81	4	844	31	9	14	44	1.78
22827903--22828642	322	2.3	323	84	3	931	31	10	15	43	1.79
22842848--22842938	30	3.0	30	90	0	119	29	8	37	24	1.85
22846555--22846921	200	1.8	201	85	2	515	38	9	7	43	1.67
22856906--22857135	113	2.0	113	96	0	426	24	14	12	48	1.79
22864459--22864490	2	16.0	2	100	0	64	50	0	0	50	1.00
22873263--22873342	27	2.9	28	78	10	101	37	7	18	36	1.79
22875834--22876097	132	2.0	133	97	0	503	31	18	25	25	1.98
22876160--22876192	16	2.1	16	100	0	66	39	0	18	42	1.50
22880074--22880120	23	2.1	22	88	7	69	82	2	2	12	0.84
22882550--22882587	18	2.1	18	85	9	51	26	0	0	73	0.83
22883630--22883856	43	5.2	43	77	3	195	45	14	13	26	1.81
22883621--22883858	87	2.7	87	79	3	264	44	14	14	26	1.83
22884393--22884438	4	11.8	4	86	4	67	23	4	0	71	1.03
22884565--22884590	13	2.0	13	100	0	52	84	0	0	15	0.62
22885441--22885466	7	3.7	7	100	0	52	26	0	0	73	0.84
22887059--22887090	14	2.3	15	89	10	50	9	6	3	81	0.97
22888922--22888955	9	3.8	9	96	0	59	26	0	0	73	0.83
22888913--22888954	18	2.3	18	87	0	57	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22889141--22889533	206	1.9	202	81	8	465	45	8	10	35	1.69
22901369--22901707	49	6.9	49	79	4	328	30	10	21	38	1.86
22901367--22901707	98	3.5	97	80	6	393	30	9	21	37	1.86
22901664--22901802	49	3.0	44	78	11	136	25	9	19	45	1.80
22901994--22902040	21	2.2	21	96	0	85	0	14	0	85	0.61
22901999--22902053	16	3.5	16	78	14	60	0	21	0	78	0.76
22901997--22902040	10	4.4	10	80	8	54	0	15	0	84	0.63
22902290--22902346	20	2.7	22	76	13	66	52	12	7	28	1.64
22902954--22903004	21	2.3	23	76	6	61	31	1	1	64	1.15
22908268--22908421	77	2.0	77	98	0	299	27	22	11	38	1.89
22914112--22914148	2	18.5	2	100	0	74	48	0	0	51	1.00
22919648--22919672	1	25.0	1	100	0	50	0	0	0	100	0.00
22922588--22922637	10	4.6	11	73	11	50	66	0	34	0	0.92
22923489--22923629	54	2.6	54	82	4	178	53	9	9	28	1.63
22925758--22925795	2	19.0	2	100	0	76	0	50	0	50	1.00
22928314--22928392	40	2.0	41	87	2	115	20	13	27	37	1.91
22933381--22933465	37	2.3	37	89	4	127	35	27	15	22	1.94
22933535--22933590	3	18.7	3	88	0	58	57	1	8	32	1.40
22936111--22936153	19	2.3	19	84	8	52	58	0	9	32	1.30
22936409--22936489	21	3.8	20	70	15	56	37	1	4	56	1.29
22939312--22939377	32	2.1	32	97	0	123	31	6	25	36	1.81
22945405--22945452	21	2.3	21	85	0	60	2	18	0	79	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22946551--22946586	17	2.1	17	89	5	54	77	2	0	19	0.88
22948767--22948960	3	67.0	3	74	14	158	36	2	3	58	1.25
22949025--22949109	37	2.3	37	85	4	109	23	14	25	36	1.93
22951209--22951256	23	2.1	23	84	0	60	25	0	0	75	0.81
22954667--22954779	53	2.2	52	80	7	140	54	7	15	22	1.65
22955020--22955136	20	5.4	22	77	14	111	79	3	13	3	0.99
22955020--22955096	35	2.2	35	85	0	109	81	3	9	5	0.96
22955020--22955094	7	10.6	7	77	8	62	82	4	8	5	0.93
22955013--22955107	29	3.3	28	81	14	88	80	4	11	4	1.00
22955090--22955131	18	2.3	19	91	4	68	76	2	21	0	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129