genome.fa.s24.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  110  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18419522--18419606	29	3.0	29	96	1	154	23	0	37	38	1.55
18421772--18421822	23	2.3	23	83	12	63	35	17	0	47	1.48
18422721--18422761	21	2.0	21	86	9	59	43	0	26	29	1.55
18423482--18423559	20	4.1	19	77	8	86	60	5	1	33	1.27
18423476--18423598	9	12.9	10	69	13	71	60	4	1	33	1.28
18423672--18423707	7	5.6	7	81	18	51	66	11	0	22	1.22
18423656--18423700	18	2.3	20	88	7	67	62	11	0	26	1.29
18423862--18423902	19	2.2	18	87	12	57	36	4	4	53	1.44
18424079--18424145	10	6.6	10	74	3	62	37	4	2	55	1.36
18424072--18424137	20	3.3	19	79	10	78	37	4	1	56	1.29
18424149--18424187	15	2.7	15	81	18	55	15	0	12	71	1.14
18424187--18424233	18	2.6	19	83	9	55	44	2	8	44	1.46
18424236--18424279	22	2.2	19	88	12	61	38	2	2	56	1.24
18424236--18424282	21	2.4	19	82	7	58	42	2	2	53	1.25
18424236--18424301	18	3.4	18	81	8	60	40	1	1	56	1.18
18424258--18424306	18	2.7	18	80	0	53	36	0	2	61	1.08
18424334--18424452	30	3.9	30	80	6	107	39	0	7	52	1.30
18424353--18424476	30	4.1	30	76	10	117	41	0	7	50	1.30
18424369--18424485	20	5.8	19	75	11	92	37	0	8	53	1.31
18424359--18424492	10	13.6	9	71	18	81	36	0	7	55	1.28
18425443--18425474	4	7.8	4	96	3	55	78	0	0	21	0.76
18432349--18433433	161	6.8	161	78	6	860	43	15	8	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18434589--18434625	13	2.8	13	87	0	56	62	5	8	24	1.44
18438280--18438332	26	2.0	27	85	7	74	37	0	3	58	1.16
18438432--18438522	10	9.0	10	76	8	60	28	2	9	59	1.41
18438466--18438517	19	2.6	19	90	6	77	25	0	9	65	1.23
18438543--18438588	21	2.3	21	88	7	69	30	0	6	63	1.20
18438565--18438634	28	2.5	28	83	2	95	28	0	7	64	1.20
18438631--18438895	20	14.1	19	67	17	74	39	3	4	52	1.38
18438670--18438774	18	5.8	19	70	19	57	44	0	1	52	1.18
18438621--18438779	19	8.6	19	70	18	75	42	2	3	50	1.33
18438781--18438816	8	4.5	8	89	0	54	36	2	8	52	1.46
18438840--18438887	18	2.5	20	90	9	75	35	4	2	58	1.29
18439830--18439857	14	2.0	14	100	0	56	85	0	0	14	0.59
18442853--18442883	15	2.1	15	100	0	62	35	25	6	32	1.82
18444396--18444790	161	2.4	160	79	7	391	43	15	9	32	1.78
18444491--18444788	161	1.9	161	86	0	434	43	14	10	32	1.79
18444498--18445044	300	1.8	299	81	2	686	43	13	9	33	1.76
18444879--18445251	156	2.4	156	77	3	345	41	14	8	34	1.77
18445251--18445403	20	7.8	19	72	13	96	37	3	3	54	1.35
18445317--18445402	18	4.6	18	76	9	91	40	3	4	51	1.40
18445322--18445374	19	2.9	18	78	8	63	35	3	5	54	1.42
18445317--18445403	20	4.6	19	78	8	97	41	3	4	50	1.40
18445502--18445621	20	6.3	18	70	16	64	32	5	4	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18445515--18445595	20	4.0	20	70	9	65	38	6	2	53	1.40
18445771--18445824	27	2.0	27	92	0	90	64	5	5	24	1.36
18449108--18449147	19	2.0	20	95	4	73	47	2	0	50	1.14
18449297--18449333	2	19.0	2	94	5	67	51	0	0	48	1.00
18451559--18451587	12	2.4	12	100	0	58	20	17	6	55	1.65
18460567--18460605	12	3.2	12	85	7	60	35	0	0	64	0.94
18460825--18460864	15	2.7	14	85	11	53	37	0	0	62	0.95
18461439--18461479	18	2.3	18	87	8	57	68	0	4	26	1.10
18464282--18464352	18	4.1	18	70	15	60	49	1	1	47	1.18
18464286--18464364	32	2.5	32	87	0	122	44	1	1	53	1.16
18464424--18464464	22	1.9	22	90	5	66	41	2	0	56	1.13
18464471--18464500	13	2.3	13	94	0	51	30	3	0	66	1.07
18465900--18465946	2	23.0	2	86	4	67	53	2	0	44	1.12
18472133--18472157	12	2.1	12	100	0	50	56	8	16	20	1.65
18475735--18475798	32	2.0	32	100	0	128	43	18	6	31	1.75
18488231--18488264	16	2.2	15	89	5	50	58	0	2	38	1.13
18488252--18488286	19	1.9	18	88	11	54	71	0	2	25	1.00
18488399--18488467	30	2.3	30	87	5	95	30	7	1	60	1.32
18492070--18492114	21	2.1	21	83	0	54	80	6	6	6	1.04
18492957--18492986	15	1.9	16	93	6	53	43	10	0	46	1.37
18493445--18493501	23	2.5	23	78	18	66	36	3	0	59	1.14
18494760--18494819	21	2.8	21	80	7	68	41	0	6	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18495785--18495862	21	3.4	23	80	15	90	37	2	0	60	1.11
18499221--18499248	2	14.0	2	100	0	56	50	0	0	50	1.00
18504446--18504484	17	2.4	17	87	8	55	61	0	5	33	1.18
18504793--18504818	10	2.6	10	100	0	52	65	0	15	19	1.27
18509826--18509873	23	2.1	23	84	0	60	29	6	4	60	1.40
18513330--18513394	33	1.9	33	81	3	76	18	1	21	58	1.47
18513570--18513793	123	1.8	123	83	3	299	34	0	11	54	1.36
18513737--18513786	23	2.3	23	93	6	86	34	0	2	64	1.05
18514927--18515000	28	2.7	27	73	19	71	9	5	9	75	1.18
18514926--18515000	29	2.6	29	72	16	66	9	5	9	76	1.17
18516301--18516378	40	2.0	40	89	2	122	35	5	6	52	1.49
18519434--18519477	22	2.0	22	91	8	72	31	9	13	45	1.75
18519618--18519667	26	2.0	25	84	7	66	22	18	6	54	1.65
18525457--18525742	153	1.9	153	94	0	509	26	15	22	35	1.94
18533366--18533413	19	2.6	19	83	9	55	35	2	6	56	1.36
18537810--18537884	36	2.1	37	97	2	143	74	5	12	8	1.20
18543421--18543495	36	2.1	36	85	7	100	36	2	16	45	1.61
18543899--18543933	17	2.1	17	94	0	61	80	0	0	20	0.72
18544022--18544072	27	1.9	27	88	11	79	52	1	3	41	1.31
18544327--18544383	18	3.3	17	79	13	55	77	0	3	19	0.92
18544325--18544363	16	2.5	15	84	12	51	74	0	2	23	0.94
18544711--18544750	21	1.9	21	85	10	55	40	2	5	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18545416--18545476	27	2.2	29	91	8	108	47	0	0	52	1.00
18545433--18545476	15	3.3	13	79	14	54	47	0	0	52	1.00
18545501--18545533	16	2.1	16	94	5	59	48	0	0	51	1.00
18546039--18546083	17	2.6	17	80	13	56	48	4	0	46	1.22
18574822--18574871	19	2.4	22	77	12	61	44	2	4	50	1.32
18579548--18579576	15	2.0	15	93	6	51	82	13	3	0	0.79
18580676--18580707	12	2.4	14	90	10	50	21	0	9	68	1.17
18581461--18581485	13	1.9	13	100	0	50	0	28	0	72	0.86
18588017--18588041	2	12.5	2	100	0	50	52	0	0	48	1.00
18589324--18589354	15	2.1	15	100	0	62	19	6	32	41	1.77
18589698--18589755	29	2.0	29	100	0	116	27	20	24	27	1.99
18592380--18592407	14	2.0	14	100	0	56	50	14	0	35	1.43
18604263--18604339	19	3.9	19	80	11	75	23	1	1	74	0.97
18604442--18604525	42	2.0	43	83	6	109	28	4	5	60	1.40
18604442--18604543	44	2.4	41	80	8	105	31	4	4	58	1.40
18605383--18605477	4	23.8	4	72	19	74	25	1	2	71	1.03
18605383--18605477	7	11.9	8	75	16	74	25	1	2	71	1.03
18605428--18605478	18	2.7	18	77	17	59	19	1	0	78	0.85
18605432--18605483	22	2.4	23	84	12	74	19	3	0	76	0.93
18605510--18605780	58	4.5	59	82	9	325	43	5	13	36	1.69
18605510--18605779	59	4.5	59	83	9	314	43	5	13	36	1.69
18605515--18605740	117	1.9	118	90	2	357	45	6	12	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18608941--18608972	15	2.1	15	94	0	55	21	25	3	50	1.64
18615869--18615926	9	6.2	9	78	13	64	75	0	15	8	1.02
18616988--18617090	29	3.4	29	79	15	102	29	8	11	50	1.68
18617004--18617090	29	2.8	32	79	15	110	32	6	11	49	1.65
18617432--18617479	23	2.1	23	92	7	80	20	0	2	77	0.88
18617432--18617499	23	2.9	22	83	14	66	20	1	1	76	0.94
18617504--18617534	15	2.1	15	93	0	53	25	0	3	70	1.02
18617658--18617709	28	2.0	25	85	11	68	28	5	0	65	1.16
18617584--18617710	43	3.0	41	83	5	128	31	4	2	61	1.29
18618588--18618641	9	6.2	9	71	16	51	18	1	0	79	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129