genome.fa.s24.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  63  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9611654--9611778	18	6.9	18	74	13	105	32	35	4	28	1.78
9611658--9611700	21	2.0	21	95	0	77	25	44	2	27	1.66
9612159--9612186	6	4.7	6	100	0	56	46	0	0	53	1.00
9619030--9620001	358	2.7	356	83	4	1202	35	11	15	37	1.85
9619703--9620326	296	2.1	297	87	1	910	37	12	14	35	1.85
9629504--9629551	3	16.0	3	100	0	96	33	0	0	66	0.92
9630850--9630892	20	2.2	20	87	8	61	6	44	4	44	1.52
9632048--9632437	38	10.5	37	76	9	271	54	17	13	14	1.70
9632048--9632323	114	2.5	112	81	4	331	54	18	13	13	1.70
9632048--9632437	76	5.3	75	73	10	311	54	17	13	14	1.70
9632299--9632358	32	1.9	32	89	3	95	60	23	6	10	1.52
9632334--9632441	36	2.9	35	81	9	117	53	13	15	16	1.73
9632428--9632497	35	2.0	35	85	0	95	38	11	21	28	1.88
9632490--9632552	22	2.8	23	76	9	58	25	20	19	34	1.96
9632893--9632932	18	2.2	18	86	0	53	42	12	22	22	1.87
9632834--9632978	69	2.1	69	88	5	229	40	11	15	32	1.83
9633346--9633444	41	2.3	43	74	3	103	33	5	21	40	1.75
9633256--9633931	260	2.6	256	81	5	702	31	10	19	38	1.85
9643270--9643342	37	2.0	37	94	0	128	43	16	6	32	1.74
9643399--9643448	26	1.9	26	83	0	64	64	8	4	24	1.38
9658341--9658379	19	2.1	19	100	0	78	15	10	15	58	1.62
9660553--9660604	26	2.1	24	82	7	59	44	9	17	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9662738--9662793	28	2.0	30	82	10	73	71	0	3	25	1.02
9663358--9663397	14	2.6	16	80	15	57	22	0	5	72	1.04
9669370--9669430	17	3.4	16	72	16	50	63	3	0	32	1.10
9669372--9669433	18	3.4	17	74	12	61	64	3	0	32	1.09
9669583--9669623	19	2.1	19	86	4	55	56	4	2	36	1.34
9669682--9669712	9	3.6	9	95	4	55	25	0	9	64	1.24
9669756--9669831	18	4.1	19	68	15	52	35	2	2	59	1.25
9669752--9669832	28	3.0	26	75	19	78	39	2	2	55	1.26
9669892--9669930	17	2.3	16	83	12	51	41	2	5	51	1.38
9669977--9670017	17	2.4	16	84	11	55	39	2	0	58	1.11
9670878--9670921	23	2.0	23	90	4	72	59	2	2	36	1.23
9671225--9671310	42	2.0	42	95	0	154	41	17	3	37	1.66
9671662--9671721	29	2.1	29	83	0	75	30	5	28	36	1.78
9672419--9672443	13	1.9	13	100	0	50	28	0	0	72	0.86
9673203--9673263	18	3.2	19	75	13	54	39	3	3	54	1.33
9673203--9673264	22	3.2	20	73	15	58	38	3	3	54	1.32
9673994--9674027	15	2.2	16	89	5	52	61	0	0	38	0.96
9675693--9675734	20	2.2	20	86	4	59	14	11	0	73	1.09
9676782--9676849	32	2.2	31	83	2	82	48	0	1	50	1.10
9676782--9676854	18	4.3	18	71	13	64	49	0	1	49	1.09
9682967--9683009	14	3.3	13	84	9	52	83	0	2	13	0.74
9682968--9683009	19	2.2	19	91	0	66	83	0	2	14	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9685271--9685338	25	2.6	26	80	15	86	50	29	0	20	1.49
9690725--9690832	43	2.5	44	87	3	155	26	10	15	47	1.78
9691064--9691107	3	14.3	3	90	4	70	31	2	2	63	1.19
9692552--9692614	20	3.0	21	81	6	76	38	4	9	47	1.57
9693193--9693285	31	3.0	31	93	1	159	6	23	3	66	1.30
9694627--9694661	12	2.9	12	91	0	52	42	8	8	40	1.66
9694340--9694962	321	1.9	321	98	0	1192	31	14	15	38	1.88
9696632--9696672	17	2.6	16	85	11	57	78	4	4	12	1.07
9696637--9696672	17	2.2	17	90	9	58	77	5	5	11	1.10
9697698--9697777	5	14.8	5	71	19	54	70	3	0	26	1.04
9697698--9697739	21	2.0	21	85	0	57	73	0	0	26	0.83
9704671--9704707	2	18.5	2	100	0	74	51	0	48	0	1.00
9713041--9713173	71	1.9	71	91	0	221	41	12	14	32	1.82
9719047--9719236	98	1.9	98	92	0	317	37	16	11	34	1.85
9720672--9720705	9	3.7	9	88	4	50	0	11	0	88	0.52
9720757--9720814	3	18.7	3	89	10	82	32	0	0	67	0.91
9721275--9721341	31	2.2	31	84	10	84	28	23	20	26	1.99
9721793--9721877	6	13.7	6	68	19	50	15	7	1	76	1.06
9721829--9721877	16	3.1	15	80	8	53	16	6	0	77	0.96
9721950--9721979	15	2.0	15	93	0	51	63	6	0	30	1.20
9721893--9722140	59	4.1	61	83	4	324	47	8	12	31	1.71
9724146--9724190	21	2.1	21	83	4	54	73	20	2	4	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9725129--9725192	32	2.0	32	84	9	85	54	7	1	35	1.39
9725444--9725502	24	2.5	24	94	0	100	49	23	3	23	1.65
9725444--9725682	8	30.4	8	69	6	67	47	27	3	21	1.68
9725508--9725638	16	8.3	15	72	12	77	45	26	4	22	1.72
9725585--9725670	24	3.3	25	73	20	77	47	30	3	18	1.65
9725657--9725682	13	2.0	13	100	0	52	61	30	0	7	1.24
9731401--9731488	27	2.8	30	78	19	92	60	22	0	17	1.36
9734054--9734160	50	2.2	48	80	9	119	67	4	17	10	1.37
9734375--9734488	52	2.2	53	79	9	135	30	24	15	28	1.96
9738763--9738819	20	2.8	19	84	7	69	33	1	0	64	1.04
9738763--9738818	19	2.8	20	81	10	69	33	1	0	64	1.04
9738995--9739078	19	4.4	19	76	5	80	20	8	27	44	1.80
9738999--9739090	38	2.4	38	85	3	114	20	9	23	45	1.81
9739025--9739106	38	2.2	38	84	0	101	21	14	20	42	1.88
9739130--9739183	13	4.2	12	83	11	63	14	1	27	55	1.50
9739130--9739199	26	2.7	25	84	4	77	15	2	24	57	1.52
9739348--9739378	3	10.3	3	100	0	62	32	0	0	67	0.91
9740250--9740281	14	2.4	14	94	5	57	68	6	18	6	1.32
9741571--9741645	15	4.6	15	72	26	55	26	1	1	70	1.03
9741565--9741636	15	4.9	14	77	13	65	27	2	0	69	1.02
9742069--9742110	14	3.3	13	83	12	52	11	0	7	80	0.88
9742092--9742116	9	2.8	9	100	0	50	8	0	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9742071--9742116	21	2.2	21	84	7	58	8	0	6	84	0.77
9742224--9742290	22	3.0	22	78	8	73	23	22	20	32	1.98
9742317--9742357	22	1.9	21	85	5	55	26	21	21	29	1.99
9742432--9742774	33	10.6	32	70	14	134	29	13	19	37	1.90
9742432--9742773	32	10.6	33	76	5	225	29	13	19	36	1.91
9742440--9742645	66	3.2	65	83	4	202	28	13	20	37	1.90
9744028--9744123	8	11.0	9	70	11	58	4	13	2	80	0.95
9744024--9744091	26	2.6	26	80	15	70	4	17	1	76	1.03
9744053--9744095	19	2.3	19	84	11	61	4	16	2	76	1.05
9748055--9748103	26	1.9	26	84	12	66	48	4	2	44	1.33
9748108--9748153	19	2.4	19	85	7	58	54	0	2	43	1.12
9748095--9748270	34	5.3	34	68	17	93	47	1	1	50	1.16
9748181--9748400	18	12.4	18	69	20	119	40	0	2	56	1.20
9748181--9748400	15	13.8	15	67	24	80	40	0	2	56	1.20
9753845--9753900	20	2.9	19	81	5	76	17	21	21	39	1.93
9754112--9754157	21	2.2	22	84	7	60	36	2	0	60	1.09
9754251--9754323	3	24.3	3	100	0	146	34	32	0	32	1.58
9754532--9754781	122	2.0	124	95	3	452	15	23	10	50	1.75
9758094--9758125	16	2.0	16	93	0	55	37	9	6	46	1.61
9761463--9761517	20	2.8	19	82	15	76	20	21	18	40	1.92
9761726--9761771	21	2.2	22	84	7	60	36	2	0	60	1.09
9761861--9761928	3	23.3	3	94	5	122	33	32	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9762135--9762391	126	2.0	128	92	5	434	14	22	10	51	1.73
9765805--9765836	16	2.0	16	93	0	55	37	9	6	46	1.61
9771234--9771308	36	2.1	36	100	0	150	16	22	5	56	1.60
9773614--9773683	33	2.1	33	91	0	113	57	12	10	20	1.64
9780119--9780156	15	2.5	15	91	0	58	15	2	2	78	0.97
9780528--9780562	11	3.1	11	95	4	61	0	20	0	80	0.72
9780528--9780562	12	3.0	12	91	4	54	0	20	0	80	0.72
9783714--9783741	11	2.5	11	100	0	56	17	0	0	82	0.68
9784302--9784350	21	2.3	22	82	13	66	24	2	26	46	1.63
9784368--9784439	30	2.4	29	81	9	74	20	5	27	45	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129