genome.fa.s24.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  4  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787732--787784	26	2.0	26	88	0	79	30	26	20	22	1.98
782549--790437	903	9.0	875	83	6	9048	25	25	24	25	2.00
790411--790463	26	2.0	26	85	0	70	26	22	18	32	1.97
790990--791042	26	2.0	26	85	0	70	30	22	16	30	1.96
792763--792812	26	1.9	26	100	0	100	24	26	22	28	1.99
793664--793715	25	2.0	26	96	3	97	26	25	21	26	1.99
791083--794710	904	4.0	900	87	2	4865	25	25	24	25	2.00
794562--794613	25	2.0	26	92	3	88	25	25	21	28	1.99
795933--795985	26	2.0	26	96	0	97	26	24	20	28	1.99
796800--796852	26	2.0	26	96	0	97	26	24	20	28	1.99
794715--801082	897	7.2	879	84	5	7222	25	24	24	25	2.00
797697--797756	26	2.4	26	83	5	79	28	23	18	30	1.98
798595--798645	26	2.0	26	100	0	102	27	29	15	27	1.96
799483--799542	26	2.4	26	86	5	88	26	26	20	26	1.99
796397--807596	894	12.3	900	75	9	9083	25	24	23	25	2.00
801489--801541	26	2.0	26	96	0	97	28	26	18	26	1.98
803220--803272	26	2.0	26	88	0	79	30	28	16	24	1.97
804128--804180	26	2.0	26	92	0	88	30	24	18	26	1.98
805032--805084	26	2.0	26	88	0	79	30	28	16	24	1.97
805927--805976	26	1.9	26	91	0	82	28	28	16	28	1.97
802416--807602	903	5.8	895	85	4	6790	25	24	24	25	2.00
808611--808663	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809506--809558	26	2.0	26	96	0	97	28	26	18	26	1.98
811093--811145	26	2.0	26	92	0	88	28	24	20	26	1.99
809971--812098	896	2.4	898	86	2	2899	25	25	24	24	2.00
811997--812049	26	2.0	26	88	0	79	26	24	20	28	1.99
812233--812285	26	2.0	26	92	7	90	30	26	16	26	1.97
812724--815032	869	2.6	872	85	4	3019	25	25	24	24	2.00
814906--814957	26	2.0	26	96	0	95	26	25	19	28	1.98
815737--815789	26	2.0	26	96	0	97	26	24	20	28	1.99
814191--816771	845	3.0	848	86	5	3332	25	24	24	25	2.00
817093--817174	26	3.2	26	96	0	146	28	25	18	28	1.98
817174--820637	876	4.0	876	95	0	5831	26	24	23	26	2.00
821404--821456	26	2.0	26	100	0	106	30	26	16	26	1.97
822280--822332	26	2.0	26	92	0	88	28	24	20	26	1.99
820696--823827	876	3.5	874	86	4	4028	27	23	23	25	2.00
823153--823205	26	2.0	26	96	0	97	28	26	18	26	1.98
823453--824198	377	2.0	377	95	0	1359	36	18	17	27	1.94
824427--824479	26	2.0	26	96	0	97	28	26	18	26	1.98
825302--825354	26	2.0	26	100	0	106	26	26	20	26	1.99
826197--826250	26	2.1	26	89	0	81	24	24	22	29	1.99
823830--829324	898	6.2	890	85	3	7112	26	24	23	25	2.00
827084--827136	26	2.0	26	92	0	88	30	26	16	26	1.97
827978--828029	26	2.0	26	88	3	79	32	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
829649--829701	26	2.0	26	88	0	79	28	28	16	26	1.97
829322--831384	777	2.6	785	84	4	2617	24	25	24	24	2.00
831241--831293	26	2.0	26	92	0	88	28	24	20	26	1.99
829841--831435	815	2.0	812	88	1	2352	25	24	24	24	2.00
832147--832196	26	1.9	26	88	8	75	24	28	18	30	1.97
833049--833101	26	2.0	26	96	0	97	26	24	20	28	1.99
830625--835265	906	5.2	905	85	5	6081	25	24	23	25	2.00
833952--834004	26	2.0	26	92	0	88	28	24	18	28	1.98
834830--834882	26	2.0	26	88	0	79	28	24	16	30	1.97
836408--836460	26	2.0	26	92	0	88	30	20	18	30	1.97
837262--837314	26	2.0	26	100	0	106	26	22	20	30	1.98
837296--839397	853	2.4	862	83	6	2534	26	23	24	25	2.00
839018--839067	26	1.9	26	95	0	91	24	26	20	30	1.98
839507--839559	26	2.0	26	92	0	88	26	22	20	30	1.98
841291--841343	26	2.0	26	96	0	97	26	24	20	28	1.99
839409--841862	897	2.7	897	85	4	3398	25	24	23	25	2.00
841353--842381	518	2.0	518	90	1	1607	27	22	23	26	2.00
842704--842753	26	1.9	26	95	0	91	24	26	20	30	1.98
843592--843644	26	2.0	26	96	0	97	28	24	20	26	1.99
841860--845154	900	3.7	895	86	3	4537	26	24	23	26	2.00
844501--844550	26	2.0	24	88	7	73	26	24	16	34	1.95
854361--854410	25	2.0	25	92	3	84	28	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853489--855141	895	1.8	895	88	3	2529	26	24	23	25	2.00
854386--855863	716	2.1	716	90	1	2329	26	23	23	26	2.00
855969--856021	26	2.0	26	92	0	88	28	28	18	24	1.98
856093--856240	71	2.1	71	80	0	161	19	26	37	16	1.93
856950--856999	26	1.9	26	87	0	73	28	22	16	34	1.95
859173--859223	26	2.0	26	96	0	93	29	25	15	29	1.96
860061--860113	26	2.0	26	88	0	79	28	26	18	26	1.98
857518--873318	897	17.9	873	83	5	17489	25	24	23	25	2.00
863575--863625	26	2.0	26	96	0	93	31	27	13	27	1.94
865348--865398	26	2.0	26	92	0	84	31	25	15	27	1.96
867115--867165	26	2.0	26	96	0	93	31	27	13	27	1.94
868909--868961	26	2.0	26	96	0	97	26	24	20	28	1.99
869807--869862	26	2.2	26	90	0	85	32	25	19	23	1.98
871601--871653	26	2.0	26	100	0	106	26	26	20	26	1.99
872677--873971	666	2.0	651	82	8	1593	28	24	21	25	1.99
874023--874075	26	2.0	26	92	0	88	24	24	22	28	2.00
874926--874978	26	2.0	26	96	0	97	26	24	20	28	1.99
875432--875484	26	2.0	26	96	0	97	28	24	20	26	1.99
877033--877105	26	2.8	26	100	0	146	26	23	20	30	1.99
877926--877976	26	2.0	26	96	0	93	27	25	21	25	1.99
879576--879627	25	2.0	26	88	3	79	28	23	19	28	1.98
881620--881974	158	2.2	159	86	2	491	20	29	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881950--882000	26	2.0	26	96	0	93	27	27	19	25	1.99
882827--882877	26	2.0	26	96	0	93	27	27	17	27	1.98
884591--884642	26	2.0	26	92	0	86	28	25	17	28	1.97
881767--891564	901	11.0	890	82	6	10056	25	24	24	25	2.00
886362--886414	26	2.0	26	92	0	88	24	26	18	30	1.98
887201--887253	26	2.0	26	96	0	97	26	24	20	28	1.99
888104--888156	26	2.0	26	96	0	97	24	26	22	26	2.00
890816--890865	26	1.9	26	88	8	75	28	26	18	28	1.98
892362--892411	26	1.9	26	100	0	100	26	24	22	28	1.99
893472--894045	289	2.0	288	91	1	943	35	24	17	22	1.96
894243--894295	26	2.0	26	100	0	106	26	26	20	26	1.99
895147--895199	26	2.0	26	96	0	97	28	26	18	26	1.98
898995--899047	26	2.0	26	92	0	88	28	24	18	28	1.98
899899--899977	26	3.0	26	90	0	122	27	24	21	26	1.99
897277--907026	904	10.8	909	84	5	11554	25	24	24	25	2.00
900833--900883	26	2.0	26	88	0	75	31	21	19	27	1.97
902573--902625	26	2.0	26	92	0	88	26	22	22	28	1.99
903470--903522	26	2.0	26	85	7	72	32	24	18	24	1.97
904373--904424	26	2.0	26	96	0	95	25	26	19	28	1.98
905115--905193	26	3.0	26	92	0	131	27	24	18	29	1.98
905326--905378	26	2.0	26	88	0	79	32	22	18	26	1.97
906226--906278	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901705--907026	899	5.9	896	84	5	6607	26	24	24	25	2.00
906252--907703	716	2.0	711	90	2	2279	27	24	22	25	2.00
907679--909344	835	2.0	833	88	1	2503	27	23	24	24	2.00
908697--910177	713	2.1	711	90	1	2347	26	24	23	25	2.00
910279--910331	26	2.0	26	96	0	97	26	24	20	28	1.99
913695--913748	26	2.1	26	96	0	99	25	29	20	24	1.99
915141--915193	26	2.0	26	92	0	88	28	24	18	28	1.98
915228--919626	717	5.9	706	71	15	3127	26	24	23	25	2.00
917413--917465	26	2.0	26	92	0	88	28	26	20	24	1.99
917439--919626	712	3.1	712	87	3	3145	26	23	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129