genome.fa.s24.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  101  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16710869--16710893	2	12.5	2	100	0	50	48	0	0	52	1.00
16710985--16711013	2	14.5	2	100	0	58	51	0	0	48	1.00
16715094--16715130	2	18.5	2	94	0	65	45	0	2	51	1.15
16722833--16722876	2	22.0	2	100	0	88	0	50	0	50	1.00
16727647--16727676	3	10.0	3	92	0	51	0	30	0	70	0.88
16729874--16729924	25	2.0	25	88	0	75	58	7	3	29	1.44
16740008--16740060	24	2.3	23	84	12	65	60	0	5	33	1.20
16741755--16741801	24	2.0	24	91	0	76	48	8	8	34	1.64
16741823--16741864	3	14.0	3	94	0	75	69	0	0	30	0.89
16746996--16747051	28	2.0	28	86	6	78	25	8	5	60	1.47
16752426--16752495	10	5.8	11	73	26	54	72	1	4	21	1.09
16752425--16752493	18	4.2	16	73	12	61	72	1	4	21	1.10
16752826--16752864	21	1.9	21	94	5	71	25	7	5	61	1.44
16753271--16753322	3	16.7	3	78	11	52	57	1	1	38	1.21
16753284--16753329	23	2.0	24	83	12	60	52	4	4	39	1.41
16753620--16753904	115	2.5	116	80	5	321	44	10	21	23	1.82
16753534--16754110	114	5.0	116	75	7	434	45	10	20	23	1.82
16754736--16754910	43	4.0	44	78	10	180	18	18	11	51	1.75
16761552--16761581	3	10.0	3	92	0	51	63	3	0	33	1.11
16761559--16761607	16	3.1	16	80	13	50	65	0	0	34	0.93
16761600--16761645	22	2.1	22	88	8	67	69	0	0	30	0.89
16761614--16761640	12	2.2	12	100	0	54	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16762627--16762709	26	3.2	26	74	6	78	26	26	24	22	2.00
16762772--16762805	17	2.0	17	88	0	50	26	0	2	70	1.01
16762856--16762900	24	1.9	23	90	4	72	77	0	0	22	0.76
16762856--16762899	8	5.5	8	81	10	54	79	0	0	20	0.73
16762853--16762899	16	2.9	17	87	9	71	78	0	0	21	0.75
16762999--16763037	19	2.1	19	100	0	78	28	15	20	35	1.93
16762957--16763084	68	1.9	68	90	6	206	39	12	15	32	1.85
16770451--16770491	20	2.1	20	86	4	57	58	4	17	19	1.56
16774402--16774470	10	6.8	10	72	21	54	82	2	4	10	0.91
16774403--16774447	19	2.3	20	84	3	56	82	2	4	11	0.91
16774401--16774471	20	3.5	19	78	16	72	81	2	4	11	0.93
16774402--16774479	11	7.5	11	72	16	60	80	2	6	10	0.98
16775513--16775750	69	3.4	69	80	9	248	19	21	14	44	1.87
16775532--16775700	35	4.7	38	65	14	101	20	21	14	43	1.87
16775580--16775776	35	5.6	35	68	10	123	19	21	14	44	1.86
16775776--16777050	73	18.0	73	78	9	1136	20	24	14	41	1.89
16775801--16777050	142	8.8	141	79	7	1076	20	24	14	41	1.89
16775799--16777025	284	4.3	284	79	6	1274	20	24	14	41	1.89
16776785--16777035	138	1.8	138	85	3	353	19	28	13	37	1.91
16776905--16777019	39	3.1	39	66	11	105	20	26	13	39	1.89
16777276--16777333	3	18.7	3	76	13	55	62	1	0	36	1.06
16777291--16777341	26	2.1	23	85	10	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16777314--16777370	27	2.1	27	81	9	64	71	0	0	28	0.86
16777424--16777475	23	2.3	23	89	0	77	15	55	13	15	1.69
16777424--16777485	23	2.7	23	82	5	63	17	56	11	14	1.67
16777440--16777486	12	4.0	12	75	5	51	21	53	10	14	1.71
16778556--16778587	16	1.9	17	93	6	57	75	0	0	25	0.81
16782854--16782964	37	2.9	37	70	16	100	63	6	12	18	1.49
16784367--16784412	18	2.6	17	83	10	56	80	4	2	13	0.95
16784366--16784415	24	2.0	24	84	3	64	78	4	2	16	1.00
16784367--16784415	19	2.6	19	80	6	55	79	4	2	14	0.97
16794820--16794847	12	2.3	12	100	0	56	17	35	7	39	1.78
16796963--16797025	3	21.0	3	96	0	117	68	0	0	31	0.90
16797024--16797058	3	11.7	3	100	0	70	34	0	0	65	0.93
16797749--16797785	19	1.9	20	94	5	67	29	5	10	54	1.57
16798175--16798242	32	2.1	32	83	8	84	16	2	8	72	1.22
16798306--16798655	187	1.9	181	81	7	427	50	4	7	38	1.50
16798908--16799018	53	2.1	51	80	14	127	45	8	16	29	1.76
16801957--16801999	20	2.2	19	87	4	59	16	2	2	79	0.95
16802089--16802127	20	2.0	20	89	0	60	69	7	5	17	1.32
16802092--16802175	18	4.2	20	76	10	66	76	3	2	17	1.04
16802132--16802175	6	7.2	6	89	5	70	86	0	0	13	0.57
16802986--16803052	3	23.3	3	82	8	68	62	1	4	31	1.24
16802986--16803047	11	5.6	11	79	9	65	62	1	4	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16803383--16803538	63	2.5	63	96	0	285	34	9	6	49	1.61
16805324--16805372	6	8.0	6	84	11	64	67	0	2	30	1.02
16805748--16805786	20	2.0	20	90	10	62	23	10	5	61	1.48
16806209--16806259	11	4.7	11	83	7	52	58	1	1	37	1.20
16806204--16806259	3	19.3	3	83	7	71	60	1	1	35	1.17
16806569--16806904	114	2.9	113	78	5	361	43	10	23	22	1.84
16806926--16807138	115	1.9	115	82	0	273	40	11	24	22	1.87
16807118--16807169	24	2.2	24	85	0	68	38	19	26	15	1.91
16808065--16808218	42	3.6	43	76	14	147	20	16	10	53	1.71
16814745--16814793	23	2.0	25	85	14	68	61	0	0	38	0.96
16814741--16814839	34	3.0	33	81	15	93	63	0	0	36	0.95
16814746--16814798	16	3.2	16	76	15	54	64	0	0	35	0.94
16814798--16814831	12	2.6	13	90	9	52	67	0	0	32	0.91
16816025--16816071	16	2.9	17	84	15	64	76	0	0	23	0.78
16816028--16816072	24	1.9	23	86	4	63	75	0	0	24	0.80
16816128--16816223	49	2.0	49	97	0	183	42	9	15	32	1.79
16816128--16816240	49	2.3	49	92	3	174	38	9	19	31	1.84
16824307--16824347	3	13.3	3	84	5	55	63	0	0	36	0.95
16824360--16824405	8	5.8	8	92	0	74	84	0	2	13	0.71
16824488--16824558	13	5.5	13	87	0	106	23	42	8	25	1.82
16824488--16824555	26	2.6	26	95	0	118	25	39	8	26	1.85
16824776--16824826	14	3.6	14	72	12	50	70	21	7	0	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16824775--16824833	30	2.0	29	86	3	82	72	20	6	0	1.06
16825938--16826005	33	2.1	32	100	0	118	50	27	0	22	1.49
16825952--16826042	16	5.6	16	73	7	76	48	28	3	19	1.65
16825945--16826046	33	3.1	34	88	5	138	45	31	3	19	1.69
16833495--16833545	8	6.8	8	76	13	54	84	0	1	13	0.71
16833497--16833545	9	5.3	9	81	13	64	85	0	2	12	0.68
16835241--16835345	41	2.6	41	81	6	115	38	15	12	34	1.85
16835478--16835668	23	8.7	22	76	9	158	25	19	21	32	1.97
16835502--16835669	42	3.9	43	80	9	166	25	19	21	34	1.96
16835742--16835904	22	7.4	22	75	5	114	27	19	20	32	1.97
16835785--16835909	45	2.8	44	79	8	119	27	21	21	29	1.99
16836133--16836582	47	9.3	47	82	8	445	28	10	24	36	1.89
16836132--16836582	96	4.6	96	86	3	557	28	10	24	36	1.89
16836566--16836595	13	2.3	13	94	0	51	30	6	13	50	1.67
16836511--16836633	60	2.0	62	88	3	187	26	12	21	39	1.88
16837023--16837074	21	2.5	21	80	20	65	19	48	9	23	1.78
16840381--16840417	3	12.3	3	100	0	74	64	0	0	35	0.94
16841967--16842002	2	18.0	2	88	0	54	47	2	2	47	1.31
16842272--16842302	16	1.9	16	93	0	53	48	3	0	48	1.17
16842698--16842725	14	2.0	14	100	0	56	71	0	7	21	1.09
16842692--16842721	16	1.9	15	93	6	51	76	0	3	20	0.92
16843087--16843129	16	2.6	17	82	10	54	41	4	6	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16844198--16844240	19	2.3	19	84	15	54	46	0	0	53	1.00
16847461--16847502	18	2.3	18	83	0	57	66	0	0	33	0.92
16848665--16848690	12	2.2	12	100	0	52	42	0	0	57	0.98
16852379--16852404	2	13.0	2	100	0	52	50	0	50	0	1.00
16867364--16867393	2	15.0	2	100	0	60	50	0	0	50	1.00
16869893--16869942	9	5.4	9	77	17	50	22	0	0	78	0.76
16869890--16869942	17	3.0	18	81	15	58	22	0	0	77	0.77
16870021--16870387	62	6.2	60	75	16	266	49	7	9	33	1.63
16870346--16870486	54	2.6	54	89	0	228	46	11	7	34	1.69
16874317--16874369	9	5.4	10	78	17	58	81	0	11	7	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129